4.0:Information of module
pil5 red light
In comparison with root endodermis and quiescent center 40 mM NaCl help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0045132 meiotic chromosome segregation BP 2.757e-04
GO:0044723 single-organism carbohydrate metabolic p... BP 8.219e-04
GO:0010332 response to gamma radiation BP 8.777e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0008299 isoprenoid biosynthetic process BP 4.924e-10
GO:0009240 isopentenyl diphosphate biosynthetic pro... BP 7.947e-10
GO:0046490 isopentenyl diphosphate metabolic proces... BP 7.947e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pil5 red light		 Log2 signal ratio
root endodermis and quiescent center 40 mM NaCl
1 249214_at AT5G42720 [Glycosyl hydrolase family 17 protein] 0.479 0.261
2 261749_at AT1G76180 ERD14, EARLY RESPONSE TO DEHYDRATION 14 0.476 0.147
3 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.416 0.272
4 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.379 0.045
5 261889_at AT1G80810 [Tudor/PWWP/MBT superfamily protein] 0.352 -0.096
6 264522_at AT1G10050 [glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein] 0.343 0.060
7 259224_at AT3G07800 AtTK1a, TK1a, thymidine kinase 1a 0.341 0.070
8 264777_at AT1G08630 THA1, threonine aldolase 1 0.317 0.094
9 264720_at AT1G70080 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.310 0.019
10 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] 0.282 0.290
11 259169_at AT3G03520 NPC3, non-specific phospholipase C3 0.278 0.139
12 250372_at AT5G11460 unknown 0.261 0.184
13 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.256 0.081
14 245456_at AT4G16950 RPP5, RECOGNITION OF PERONOSPORA PARASITICA 5 0.245 -0.015
15 257574_at AT3G20710 [F-box family protein] 0.242 0.056
16 266511_at AT2G47680 [zinc finger (CCCH type) helicase family protein] 0.234 -0.045
17 264604_at AT1G04650 unknown 0.233 0.016
18 256188_at AT1G30160 unknown 0.231 0.023
19 257154_at AT3G27210 unknown 0.231 0.006
20 266008_at AT2G37390 NAKR2, SODIUM POTASSIUM ROOT DEFECTIVE 2 0.215 -0.070
21 260668_at AT1G19530 unknown 0.206 0.232
22 245903_at AT5G11100 ATSYTD, NTMC2T2.2, NTMC2TYPE2.2, SYT4, synaptotagmin 4, SYTD 0.202 -0.001
23 259403_at AT1G17745 PGDH, 3-phosphoglycerate dehydrogenase, PGDH2, phosphoglycerate dehydrogenase 2 0.199 -0.029
24 261643_at AT1G27720 TAF4, TBP-associated factor 4, TAF4B, TBP-associated factor 4B 0.191 0.130
25 258170_at AT3G21600 [Senescence/dehydration-associated protein-related] 0.178 -0.043
26 249736_at AT5G24460 unknown 0.178 0.056
27 250186_at AT5G14500 [aldose 1-epimerase family protein] 0.176 -0.014
28 259186_at AT3G01590 [Galactose mutarotase-like superfamily protein] 0.169 0.120
29 247974_at AT5G56780 ATET2, ARABIDOPSIS EFFECTOR OF TRANSCRIPTION2, ET2, effector of transcription2 0.165 0.009
30 259852_at AT1G72280 AERO1, endoplasmic reticulum oxidoreductins 1, ERO1, endoplasmic reticulum oxidoreductins 1 0.164 0.093
31 264870_at AT1G24210 [Paired amphipathic helix (PAH2) superfamily protein] 0.163 -0.002
32 249237_at AT5G42050 [DCD (Development and Cell Death) domain protein] 0.158 0.053
33 258117_at AT3G14700 [SART-1 family] 0.156 0.098
34 257799_at AT3G15890 [Protein kinase superfamily protein] 0.154 -0.090
35 256138_at AT1G48670 [auxin-responsive GH3 family protein] 0.147 -0.039
36 259606_at AT1G27920 MAP65-8, microtubule-associated protein 65-8 0.143 -0.123
37 247333_at AT5G63600 ATFLS5, FLS5, flavonol synthase 5 0.143 -0.016
38 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 0.139 -0.009
39 253038_at AT4G37790 HAT22 0.139 0.086
40 259087_at AT3G04980 [DNAJ heat shock N-terminal domain-containing protein] 0.137 0.090
41 261629_at AT1G49980 [DNA/RNA polymerases superfamily protein] 0.135 0.052
42 264287_at AT1G61930 unknown 0.131 -0.021
43 258436_at AT3G16720 ATL2, TOXICOS EN LEVADURA 2, TL2, TOXICOS EN LEVADURA 2 0.130 -0.069
44 266566_at AT2G24040 [Low temperature and salt responsive protein family] 0.129 -0.213
45 255302_at AT4G04830 ATMSRB5, methionine sulfoxide reductase B5, MSRB5, methionine sulfoxide reductase B5 -0.522 -0.140
46 263207_at AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 -0.485 -0.148
47 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.480 0.059
48 256125_at AT1G18250 ATLP-1 -0.466 -0.156
49 266215_at AT2G06850 EXGT-A1, endoxyloglucan transferase A1, EXT, ENDOXYLOGLUCAN TRANSFERASE, XTH4, xyloglucan endotransglucosylase/hydrolase 4 -0.462 -0.063
50 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -0.460 0.251
51 267389_at AT2G44460 BGLU28, beta glucosidase 28 -0.449 0.429
52 264371_at AT1G12090 ELP, extensin-like protein -0.449 -0.365
53 263829_at AT2G40435 unknown -0.411 0.032
54 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] -0.389 -0.244
55 254387_at AT4G21850 ATMSRB9, methionine sulfoxide reductase B9, MSRB9, methionine sulfoxide reductase B9 -0.379 -0.121
56 252624_at AT3G44735 ATPSK3, PHYTOSULFOKINE 3 PRECURSOR, PSK1, PSK3, PHYTOSULFOKINE 3 PRECURSOR -0.379 0.181
57 261075_at AT1G07280 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.374 0.098
58 248372_at AT5G51850 TRM24, TON1 Recruiting Motif 24 -0.369 0.033
59 256021_at AT1G58270 ZW9 -0.363 0.090
60 256302_at AT1G69526 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.362 -0.068
61 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 -0.349 -0.474
62 261949_at AT1G64670 BDG1, BODYGUARD1, CED1, 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1 -0.347 -0.027
63 256275_at AT3G12110 ACT11, actin-11 -0.331 -0.241
64 247035_at AT5G67110 ALC, ALCATRAZ -0.330 -0.062
65 248921_at AT5G45950 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.315 0.161
66 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 -0.287 -0.024
67 260541_at AT2G43530 [Scorpion toxin-like knottin superfamily protein] -0.282 -0.060
68 262414_at AT1G49430 LACS2, long-chain acyl-CoA synthetase 2, LRD2, LATERAL ROOT DEVELOPMENT 2 -0.278 -0.003
69 248246_at AT5G53200 TRY, TRIPTYCHON -0.274 0.009
70 253073_at AT4G37410 CYP81F4, cytochrome P450, family 81, subfamily F, polypeptide 4 -0.269 -0.047
71 262969_at AT1G75710 [C2H2-like zinc finger protein] -0.267 0.053
72 245196_at AT1G67750 [Pectate lyase family protein] -0.266 -0.082
73 252623_at AT3G45320 unknown -0.263 0.075
74 254363_at AT4G22010 sks4, SKU5 similar 4 -0.251 -0.111
75 250875_at AT5G04020 [calmodulin binding] -0.251 0.085
76 256528_at AT1G66140 ZFP4, zinc finger protein 4 -0.251 -0.040
77 246002_at AT5G20740 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.251 0.017
78 253317_at AT4G33960 unknown -0.251 0.034
79 247786_at AT5G58600 PMR5, POWDERY MILDEW RESISTANT 5, TBL44, TRICHOME BIREFRINGENCE-LIKE 44 -0.249 0.015
80 263979_at AT2G42840 PDF1, protodermal factor 1 -0.245 -0.243
81 251846_at AT3G54560 HTA11, histone H2A 11 -0.238 -0.054
82 267173_at AT2G37560 ATORC2, ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2, ORC2, origin recognition complex second largest subunit 2 -0.237 -0.205
83 255751_at AT1G31950 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.233 0.048
84 256516_at AT1G66150 TMK1, transmembrane kinase 1 -0.227 -0.137
85 261016_at AT1G26560 BGLU40, beta glucosidase 40 -0.223 0.135
86 252943_at AT4G39330 ATCAD9, CAD9, cinnamyl alcohol dehydrogenase 9 -0.222 -0.126
87 248839_at AT5G46690 bHLH071, beta HLH protein 71 -0.220 0.015