4.0:Information of module
ANAC102 knock-out seeds low oxygen
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006952 defense response BP 1.354e-05
GO:0006950 response to stress BP 1.698e-04
GO:0090407 organophosphate biosynthetic process BP 5.368e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044281 small molecule metabolic process BP 2.188e-11
GO:0044237 cellular metabolic process BP 9.383e-09
GO:0019318 hexose metabolic process BP 1.108e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ANAC102 knock-out seeds low oxygen		 Log2 signal ratio
Leafminer damaged seedlings
1 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.294 0.701
2 262899_at AT1G59870 ABCG36, ATP-binding cassette G36, ATABCG36, Arabidopsis thaliana ATP-binding cassette G36, ATPDR8, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, PDR8, PLEIOTROPIC DRUG RESISTANCE 8, PEN3, PENETRATION 3 0.276 0.331
3 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 0.266 0.081
4 249459_at AT5G39580 [Peroxidase superfamily protein] 0.247 0.385
5 267579_at AT2G42000 AtMT4a, Arabidopsis thaliana metallothionein 4a 0.227 0.013
6 246858_at AT5G25930 [Protein kinase family protein with leucine-rich repeat domain] 0.213 0.622
7 250485_at AT5G09990 PROPEP5, elicitor peptide 5 precursor 0.207 0.014
8 261979_at AT1G37130 ATNR2, ARABIDOPSIS NITRATE REDUCTASE 2, B29, CHL3, CHLORATE RESISTANT 3, NIA2, nitrate reductase 2, NIA2-1, NR, NITRATE REDUCTASE, NR2, NITRATE REDUCTASE 2 0.201 -0.077
9 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.198 0.402
10 259765_at AT1G64370 unknown 0.197 0.004
11 262072_at AT1G59590 ZCF37 0.195 0.231
12 261006_at AT1G26410 [FAD-binding Berberine family protein] 0.193 0.505
13 253796_at AT4G28460 unknown 0.190 0.082
14 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.181 0.609
15 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 0.180 0.467
16 260560_at AT2G43590 [Chitinase family protein] 0.176 0.393
17 251245_at AT3G62090 PIF6, PHYTOCHROME-INTERACTING FACTOR 6, PIL2, phytochrome interacting factor 3-like 2 0.175 0.084
18 266289_at AT2G29390 ATSMO2, STEROL 4-ALPHA-METHYL-OXIDASE 2, ATSMO2-2, Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, SMO2-2, sterol 4-alpha-methyl-oxidase 2-2 0.175 0.003
19 256931_at AT3G22490 [Seed maturation protein] 0.172 -0.004
20 258856_at AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 0.172 -0.234
21 246146_at AT5G20050 [Protein kinase superfamily protein] 0.170 0.081
22 252735_at AT3G43170 unknown 0.167 0.004
23 255622_at AT4G01070 GT72B1, UGT72B1, UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1 0.165 -0.054
24 260522_x_at AT2G41730 unknown 0.160 0.082
25 259151_at AT3G10310 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] 0.152 -0.074
26 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.151 0.876
27 248210_at AT5G54000 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.146 -0.079
28 264520_at AT1G10010 AAP8, amino acid permease 8, ATAAP8 0.146 0.011
29 264941_at AT1G60680 [NAD(P)-linked oxidoreductase superfamily protein] 0.144 -0.059
30 248096_at AT5G55240 ATPXG2, ARABIDOPSIS THALIANA PEROXYGENASE 2 0.141 0.027
31 251861_at AT3G54810 BME3, BLUE MICROPYLAR END 3, BME3-ZF, BLUE MICROPYLAR END 3-ZINC FINGER, GATA8, GATA TRANSCRIPTION FACTOR 8 0.141 0.081
32 244997_at ATCG00170 RPOC2 0.140 -0.174
33 265468_at AT2G37210 LOG3, LONELY GUY 3 0.139 -0.010
34 253870_at AT4G27530 unknown 0.138 0.023
35 247128_at AT5G66110 HIPP27, heavy metal associated isoprenylated plant protein 27 0.136 -0.102
36 262379_at AT1G73020 unknown 0.136 -0.154
37 267472_at AT2G02850 ARPN, plantacyanin 0.133 0.284
38 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] 0.133 0.592
39 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 0.133 -0.017
40 251923_at AT3G53880 AKR4C11, Aldo-keto reductase family 4 member C11 0.133 0.111
41 265647_at AT2G27410 unknown 0.133 -0.021
42 245070_at AT2G23240 AtMT4b, Arabidopsis thaliana metallothionein 4b 0.132 0.013
43 257691_at AT3G12660 FLA14, FASCICLIN-like arabinogalactan protein 14 precursor 0.131 0.014
44 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 0.130 -0.031
45 266278_at AT2G29300 [NAD(P)-binding Rossmann-fold superfamily protein] 0.129 -0.092
46 252915_at AT4G38810 [Calcium-binding EF-hand family protein] 0.129 0.194
47 261968_at AT1G65850 [Disease resistance protein (TIR-NBS-LRR class) family] 0.129 -0.012
48 256170_at AT1G51790 [Leucine-rich repeat protein kinase family protein] 0.128 0.351
49 255591_at AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 0.128 -0.027
50 249032_at AT5G44910 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.128 0.286
51 248363_at AT5G52480 [RNI-like superfamily protein] 0.124 0.003
52 266265_at AT2G29340 [NAD-dependent epimerase/dehydratase family protein] 0.123 0.185
53 264889_at AT1G23050 hydroxyproline-rich glycoprotein family protein 0.122 -0.024
54 267051_at AT2G38500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.121 0.270
55 248076_at AT5G55750 [hydroxyproline-rich glycoprotein family protein] 0.120 -0.025
56 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.119 -0.797
57 266011_at AT2G37440 [DNAse I-like superfamily protein] 0.119 0.067
58 245857_at AT5G28270 unknown 0.116 -0.045
59 255286_at AT4G04650 [RNA-directed DNA polymerase (reverse transcriptase)-related family protein] 0.116 0.004
60 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] 0.113 0.788
61 265479_at AT2G15760 unknown 0.113 0.558
62 258257_at AT3G26770 [NAD(P)-binding Rossmann-fold superfamily protein] 0.112 -0.058
63 253895_at AT4G27160 AT2S3, SESA3, seed storage albumin 3 0.111 0.000
64 264832_at AT1G03660 [Ankyrin-repeat containing protein] 0.111 0.005
65 263443_at AT2G28630 KCS12, 3-ketoacyl-CoA synthase 12 0.106 0.265
66 250776_at AT5G05320 [FAD/NAD(P)-binding oxidoreductase family protein] 0.106 0.185
67 263911_at AT2G36560 [AT hook motif DNA-binding family protein] 0.106 -0.019
68 244982_at ATCG00780 RPL14, ribosomal protein L14 0.105 -0.153
69 246766_at AT5G27340 unknown 0.105 -0.058
70 267028_at AT2G38470 ATWRKY33, WRKY DNA-BINDING PROTEIN 33, WRKY33, WRKY DNA-binding protein 33 0.105 0.458
71 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.105 -0.206
72 264612_at AT1G04560 [AWPM-19-like family protein] 0.105 -0.042
73 263926_at AT2G21800 ATEME1A, essential meiotic endonuclease 1A, EME1A, EME1A, essential meiotic endonuclease 1A 0.103 -0.036
74 263773_at AT2G21370 XK-1, xylulose kinase-1, XK1, XYLULOSE KINASE 1 0.103 -0.162
75 264473_at AT1G67180 [zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein] 0.101 -0.093
76 247708_at AT5G59550 unknown 0.101 0.352
77 258452_at AT3G22370 AOX1A, alternative oxidase 1A, ATAOX1A, AtHSR3, HSR3, hyper-sensitivity-related 3 0.100 0.174
78 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] 0.100 -0.543
79 250174_at AT5G14380 AGP6, arabinogalactan protein 6 0.099 -0.021
80 251109_at AT5G01600 ATFER1, ARABIDOPSIS THALIANA FERRETIN 1, FER1, ferretin 1 0.099 0.217
81 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 0.098 -0.031
82 260070_at AT1G73830 BEE3, BR enhanced expression 3 0.097 -0.610
83 246727_at AT5G28010 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.096 0.060
84 257846_at AT3G12910 [NAC (No Apical Meristem) domain transcriptional regulator superfamily protein] 0.096 -0.001
85 246657_at AT5G35250 unknown 0.096 -0.009
86 254299_at AT4G22920 ATNYE1, NON-YELLOWING 1, NYE1, NON-YELLOWING 1, SGR, STAY-GREEN 0.095 0.075
87 254907_at AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] 0.094 -0.004
88 254325_at AT4G22650 unknown 0.094 -0.023
89 254737_at AT4G13840 CER26, ECERIFERUM 26 0.094 -0.218
90 247519_at AT5G61430 ANAC100, NAC domain containing protein 100, ATNAC5, NAC100, NAC domain containing protein 100 0.093 0.002
91 258745_at AT3G05920 [Heavy metal transport/detoxification superfamily protein ] 0.092 0.015
92 247582_at AT5G60760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.092 -0.016
93 247351_at AT5G63790 ANAC102, NAC domain containing protein 102, NAC102, NAC domain containing protein 102 -0.934 0.376
94 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.527 0.405
95 257391_at AT2G32050 unknown -0.400 -0.014
96 262423_at AT1G23450 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.394 -0.014
97 245803_at AT1G47128 RD21, responsive to dehydration 21, RD21A, responsive to dehydration 21A -0.385 -0.044
98 250910_at AT5G03720 AT-HSFA3, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, HSFA3, heat shock transcription factor A3 -0.329 0.045
99 263544_at AT2G21590 APL4 -0.325 0.014
100 261826_at AT1G11580 ATPMEPCRA, PMEPCRA, methylesterase PCR A -0.287 0.291
101 250038_at AT5G18360 [Disease resistance protein (TIR-NBS-LRR class) family] -0.264 0.065
102 260914_at AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 -0.255 -0.379
103 248912_at AT5G45670 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.252 -0.270
104 266123_at AT2G45180 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.250 -0.149
105 264300_at AT1G78670 ATGGH3, gamma-glutamyl hydrolase 3, GGH3, gamma-glutamyl hydrolase 3 -0.244 0.054
106 265877_at AT2G42380 ATBZIP34, BZIP34 -0.237 -0.393
107 256516_at AT1G66150 TMK1, transmembrane kinase 1 -0.228 -0.163
108 249013_at AT5G44700 EDA23, EMBRYO SAC DEVELOPMENT ARREST 23, GSO2, GASSHO 2 -0.225 -0.011
109 262377_at AT1G73110 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.224 -0.291
110 259431_at AT1G01620 PIP1;3, PLASMA MEMBRANE INTRINSIC PROTEIN 1;3, PIP1C, plasma membrane intrinsic protein 1C, TMP-B -0.218 -0.026
111 258828_at AT3G07130 ATPAP15, PURPLE ACID PHOSPHATASE 15, PAP15, purple acid phosphatase 15 -0.214 -0.129
112 248801_at AT5G47370 HAT2 -0.212 -0.278
113 252103_at AT3G51410 unknown -0.211 0.014
114 264751_at AT1G23020 ATFRO3, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 -0.201 -0.300
115 259409_at AT1G13330 AHP2, Arabidopsis Hop2 homolog -0.200 -0.015
116 253614_at AT4G30350 SMXL2, SMAX1-like 2 -0.197 0.520
117 250907_at AT5G03670 TRM28, TON1 Recruiting Motif 28 -0.195 -0.188
118 250992_at AT5G02260 ATEXP9, ATEXPA9, expansin A9, ATHEXP ALPHA 1.10, EXP9, EXPA9, expansin A9 -0.194 0.258
119 255640_at AT4G00800 SETH5 -0.191 -0.106
120 261586_at AT1G01640 [BTB/POZ domain-containing protein] -0.185 0.017
121 250918_at AT5G03610 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.183 0.297
122 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.181 -0.584
123 253012_at AT4G37900 unknown -0.179 0.156
124 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 -0.177 0.188
125 262219_at AT1G74750 [Pentatricopeptide repeat (PPR) superfamily protein] -0.175 0.001
126 256659_at AT3G12020 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.175 -0.235
127 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 -0.172 0.155
128 253319_at AT4G33990 EMB2758, embryo defective 2758 -0.170 -0.082
129 250493_at AT5G09800 [ARM repeat superfamily protein] -0.169 0.162
130 260859_at AT1G43780 scpl44, serine carboxypeptidase-like 44 -0.166 0.011
131 258700_at AT3G09710 IQD1, IQ-domain 1 -0.165 -0.195
132 258333_at AT3G16000 MFP1, MAR binding filament-like protein 1 -0.164 -0.136
133 266063_at AT2G18760 CHR8, chromatin remodeling 8 -0.163 -0.045
134 262131_at AT1G02900 ATRALF1, RAPID ALKALINIZATION FACTOR 1, RALF1, rapid alkalinization factor 1, RALFL1, RALF-LIKE 1 -0.163 0.350
135 264339_at AT1G70290 ATTPS8, ATTPSC, TPS8, trehalose-6-phosphatase synthase S8 -0.163 0.123
136 249430_at AT5G39900 [Small GTP-binding protein] -0.162 -0.095
137 263569_at AT2G27170 SMC3, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, TTN7, TITAN7 -0.159 -0.147
138 253211_at AT4G34880 [Amidase family protein] -0.158 -0.026
139 252570_at AT3G45300 ATIVD, IVD, isovaleryl-CoA-dehydrogenase, IVDH, ISOVALERYL-COA-DEHYDROGENASE -0.158 0.220
140 248976_at AT5G44930 ARAD2, ARABINAN DEFICIENT 2 -0.158 -0.057
141 247266_at AT5G64570 ATBXL4, ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, XYL4, beta-D-xylosidase 4 -0.157 0.040
142 249872_at AT5G23130 [Peptidoglycan-binding LysM domain-containing protein] -0.157 0.085
143 265667_at AT2G27470 NF-YB11, nuclear factor Y, subunit B11 -0.157 -0.087
144 259637_at AT1G52260 ATPDI3, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, ATPDIL1-5, PDI-like 1-5, PDI3, PROTEIN DISULFIDE ISOMERASE 3, PDIL1-5, PDI-like 1-5 -0.157 -0.069
145 262630_at AT1G06520 ATGPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, sn-2-GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1 -0.156 0.593
146 258338_at AT3G16150 ASPGB1, asparaginase B1 -0.156 -0.027
147 259463_at AT1G18950 [DDT domain superfamily] -0.155 -0.089
148 246433_at AT5G17510 unknown -0.152 -0.113
149 248354_at AT5G52330 [TRAF-like superfamily protein] -0.150 0.005
150 259252_at AT3G07610 IBM1, increase in bonsai methylation 1 -0.149 -0.044
151 255726_at AT1G25530 [Transmembrane amino acid transporter family protein] -0.148 -0.298
152 245944_at AT5G19520 ATMSL9, MSL9, mechanosensitive channel of small conductance-like 9 -0.148 -0.032
153 264001_at AT2G22420 [Peroxidase superfamily protein] -0.148 -0.202
154 261269_at AT1G26690 [emp24/gp25L/p24 family/GOLD family protein] -0.147 0.242
155 253510_at AT4G31730 GDU1, glutamine dumper 1 -0.146 -0.113
156 264551_at AT1G09460 [Carbohydrate-binding X8 domain superfamily protein] -0.146 -0.083
157 247440_at AT5G62680 AtNPF2.11, GTR2, GLUCOSINOLATE TRANSPORTER-2, NPF2.11, NRT1/ PTR family 2.11 -0.144 0.218
158 262921_at AT1G79430 APL, ALTERED PHLOEM DEVELOPMENT, WDY, WOODY -0.144 -0.052
159 250680_at AT5G06570 [alpha/beta-Hydrolases superfamily protein] -0.144 0.283
160 266284_at AT2G29190 APUM2, pumilio 2, PUM2, pumilio 2 -0.144 -0.122
161 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.143 0.055
162 248961_at AT5G45650 [subtilase family protein] -0.142 -0.398
163 259899_at AT1G71210 [Pentatricopeptide repeat (PPR) superfamily protein] -0.142 0.035
164 255230_at AT4G05390 ATRFNR1, root FNR 1, RFNR1, root FNR 1 -0.141 0.110
165 245925_at AT5G28770 AtbZIP63, Arabidopsis thaliana basic leucine zipper 63, BZO2H3 -0.140 -0.287
166 253101_at AT4G37430 CYP81F1, CYTOCHROME P450 MONOOXYGENASE 81F1, CYP91A2, cytochrome P450, family 91, subfamily A, polypeptide 2 -0.139 0.200
167 266600_at AT2G46070 ATMPK12, MAPK12, MPK12, mitogen-activated protein kinase 12 -0.139 -0.056
168 260274_at AT1G80460 GLI1, NHO1, nonhost resistance to P. s. phaseolicola 1 -0.139 0.194
169 257460_at AT1G75580 SAUR51, SMALL AUXIN UPREGULATED RNA 51 -0.137 0.418
170 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 -0.137 -0.007
171 247168_at AT5G65860 [ankyrin repeat family protein] -0.137 -0.002
172 258797_at AT3G04730 IAA16, indoleacetic acid-induced protein 16 -0.136 -0.029
173 264562_at AT1G55760 [BTB/POZ domain-containing protein] -0.136 -0.021
174 253000_at AT4G38360 LAZ1, LAZARUS 1 -0.135 0.105
175 264704_at AT1G70090 GATL9, GALACTURONOSYLTRANSFERASE-LIKE 9, LGT8, glucosyl transferase family 8 -0.135 -0.156
176 265695_at AT2G24490 ATRPA2, ATRPA32A, ROR1, SUPPRESSOR OF ROS1, RPA2, replicon protein A2, RPA32A -0.135 -0.051
177 264340_at AT1G70280 [NHL domain-containing protein] -0.134 -0.576
178 265990_at AT2G24280 [alpha/beta-Hydrolases superfamily protein] -0.133 -0.360
179 247524_at AT5G61440 ACHT5, atypical CYS HIS rich thioredoxin 5 -0.133 -0.288
180 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 -0.133 -0.425
181 250614_at AT5G07260 [START (StAR-related lipid-transfer) lipid-binding domain] -0.133 -0.010
182 264462_at AT1G10200 AtWLIM1, WLIM1, WLIM1 -0.132 -0.024
183 255770_at AT1G18560 [BED zinc finger ] -0.128 -0.075