4.0:Information of module
penta mutant (higher order mutant)
In comparison with Dark 1day hml help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 1.018e-08
GO:0010035 response to inorganic substance BP 2.702e-07
GO:0065007 biological regulation BP 3.785e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010224 response to UV-B BP 7.394e-16
GO:0042254 ribosome biogenesis BP 1.765e-13
GO:0055086 nucleobase-containing small molecule met... BP 3.188e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
penta mutant (higher order mutant)		 Log2 signal ratio
Dark 1day hml
1 251196_at AT3G62950 [Thioredoxin superfamily protein] 0.583 1.286
2 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 0.535 1.500
3 249202_at AT5G42580 CYP705A12, cytochrome P450, family 705, subfamily A, polypeptide 12 0.450 -0.175
4 248729_at AT5G48010 AtTHAS1, Arabidopsis thaliana thalianol synthase 1, THAS, THALIANOL SYNTHASE, THAS1, thalianol synthase 1 0.420 -0.175
5 258225_at AT3G15630 unknown 0.306 3.963
6 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 0.301 5.660
7 249205_at AT5G42600 MRN1, marneral synthase 1 0.264 -0.175
8 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 0.259 4.851
9 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 0.254 2.763
10 261567_at AT1G33055 unknown 0.244 4.715
11 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE 0.237 -0.175
12 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] 0.236 3.605
13 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] 0.235 -0.505
14 251221_at AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.235 4.384
15 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.229 -0.393
16 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 0.225 4.686
17 248432_at AT5G51390 unknown 0.225 1.999
18 262301_at AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.218 2.114
19 259982_at AT1G76410 ATL8 0.218 3.971
20 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] 0.218 -0.175
21 254909_at AT4G11210 [Disease resistance-responsive (dirigent-like protein) family protein] 0.215 0.352
22 261157_at AT1G34510 [Peroxidase superfamily protein] 0.212 -0.175
23 259364_at AT1G13260 EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, related to ABI3/VP1 1 0.208 1.326
24 259977_at AT1G76590 [PLATZ transcription factor family protein] 0.204 4.942
25 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 0.202 -0.571
26 248728_at AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 0.190 -0.175
27 245602_at AT4G14270 unknown 0.189 2.873
28 262549_at AT1G31290 AGO3, ARGONAUTE 3 0.188 -0.077
29 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] 0.187 -0.175
30 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 0.183 3.588
31 262756_at AT1G16370 ATOCT6, ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, OCT6, organic cation/carnitine transporter 6 0.182 -0.265
32 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] 0.181 -0.175
33 258939_at AT3G10020 unknown 0.176 1.943
34 260431_at AT1G68190 BBX27, B-box domain protein 27 0.176 1.035
35 252250_at AT3G49790 [Carbohydrate-binding protein] 0.176 3.116
36 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 0.174 6.316
37 254424_at AT4G21510 AtFBS2, FBS2, F-box stress induced 2 0.174 1.779
38 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.173 -0.175
39 250381_at AT5G11610 [Exostosin family protein] 0.171 2.587
40 249203_at AT5G42590 CYP71A16, cytochrome P450, family 71, subfamily A, polypeptide 16, MRO, marneral oxidase 0.171 -0.175
41 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.170 5.173
42 261395_at AT1G79700 WRI4, WRINKLED 4 0.169 3.237
43 261265_at AT1G26800 [RING/U-box superfamily protein] 0.169 2.237
44 263594_at AT2G01880 ATPAP7, PURPLE ACID PHOSPHATASE 7, PAP7, purple acid phosphatase 7 0.168 -0.175
45 264467_at AT1G10140 [Uncharacterised conserved protein UCP031279] 0.168 3.409
46 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 0.168 9.409
47 256098_at AT1G13700 PGL1, 6-phosphogluconolactonase 1 0.166 1.485
48 249941_at AT5G22270 unknown 0.165 2.069
49 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 0.164 1.763
50 246195_at AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 0.164 1.665
51 265067_at AT1G03850 ATGRXS13, glutaredoxin 13, GRXS13, glutaredoxin 13 0.163 -0.516
52 265031_at AT1G61590 [Protein kinase superfamily protein] 0.158 -0.175
53 255568_at AT4G01250 AtWRKY22, WRKY22 0.157 2.796
54 247293_at AT5G64510 TIN1, tunicamycin induced 1 0.156 -3.383
55 265987_at AT2G24240 [BTB/POZ domain with WD40/YVTN repeat-like protein] 0.154 2.212
56 257774_at AT3G29250 AtSDR4, SDR4, short-chain dehydrogenase reductase 4 0.153 -2.321
57 267477_at AT2G02710 PLP, PAS/LOV PROTEIN, PLPA, PAS/LOV PROTEIN A, PLPB, PAS/LOV protein B, PLPC, PAS/LOV PROTEIN C 0.152 2.903
58 246888_at AT5G26270 unknown 0.151 0.641
59 254665_at AT4G18340 [Glycosyl hydrolase superfamily protein] 0.151 -1.422
60 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] 0.151 -0.175
61 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.150 0.908
62 263953_at AT2G36050 ATOFP15, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, OFP15, ovate family protein 15 0.150 0.875
63 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] 0.149 -1.114
64 265481_at AT2G15960 unknown 0.148 6.686
65 247867_at AT5G57630 CIPK21, CBL-interacting protein kinase 21, SnRK3.4, SNF1-RELATED PROTEIN KINASE 3.4 0.143 3.706
66 262010_at AT1G35612 [expressed protein] 0.143 1.541
67 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 0.143 -0.175
68 254301_at AT4G22790 [MATE efflux family protein] 0.140 -0.152
69 247754_at AT5G59080 unknown 0.140 1.112
70 266016_at AT2G18670 [RING/U-box superfamily protein] 0.139 1.789
71 247585_at AT5G60680 unknown 0.139 0.869
72 249128_at AT5G43440 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.137 1.411
73 259252_at AT3G07610 IBM1, increase in bonsai methylation 1 0.137 0.644
74 249848_at AT5G23220 NIC3, nicotinamidase 3 0.136 -0.175
75 256935_at AT3G22570 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.135 -0.175
76 254193_at AT4G23870 unknown 0.135 4.278
77 250132_at AT5G16560 KAN, KANADI, KAN1, KANADI 1 0.135 1.345
78 252464_at AT3G47160 [RING/U-box superfamily protein] 0.135 3.618
79 252175_at AT3G50700 AtIDD2, indeterminate(ID)-domain 2, IDD2, indeterminate(ID)-domain 2 0.134 4.480
80 261453_at AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 0.132 0.547
81 259846_at AT1G72140 [Major facilitator superfamily protein] 0.132 -0.175
82 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 0.130 2.113
83 248204_at AT5G54280 ATM2, myosin 2, ATM4, ARABIDOPSIS THALIANA MYOSIN 4, ATMYOS1, ARABIDOPSIS THALIANA MYOSIN 1 0.129 1.309
84 250810_at AT5G05090 [Homeodomain-like superfamily protein] 0.128 1.243
85 259163_at AT3G01490 [Protein kinase superfamily protein] 0.128 1.093
86 259160_at AT3G05410 [Photosystem II reaction center PsbP family protein] 0.127 -0.226
87 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.127 -0.175
88 265246_at AT2G43050 ATPMEPCRD 0.126 -0.799
89 261292_at AT1G36940 unknown 0.125 0.674
90 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 0.125 -1.106
91 255980_at AT1G33970 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.124 2.360
92 262170_at AT1G74940 unknown 0.124 1.742
93 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 0.123 -0.175
94 256420_at AT1G33475 [SNARE-like superfamily protein] 0.122 -0.318
95 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 -0.392 -2.906
96 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 -0.293 -2.538
97 246228_at AT4G36430 [Peroxidase superfamily protein] -0.290 -5.085
98 247463_at AT5G62210 [Embryo-specific protein 3, (ATS3)] -0.234 -1.098
99 258807_at AT3G04030 MYR2 -0.232 1.032
100 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 -0.225 -7.653
101 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 -0.205 -0.175
102 261027_at AT1G01340 ACBK1, ATCNGC10, cyclic nucleotide gated channel 10, CNGC10, cyclic nucleotide gated channel 10 -0.204 -0.311
103 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 -0.199 -1.582
104 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -0.192 -0.948
105 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 -0.177 7.625
106 263005_at AT1G54540 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.176 0.352
107 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] -0.176 -2.553
108 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 -0.169 0.560
109 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -0.167 -3.256
110 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -0.159 -3.843
111 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 -0.158 -2.369
112 257456_at AT2G18120 SRS4, SHI-related sequence 4 -0.157 -4.940
113 247024_at AT5G66985 unknown -0.154 -0.175
114 261052_at AT1G01440 unknown -0.153 0.707
115 245401_at AT4G17670 unknown -0.152 -3.826
116 250702_at AT5G06730 [Peroxidase superfamily protein] -0.151 -0.175
117 249614_at AT5G37300 WSD1 -0.150 0.351
118 261582_at AT1G01160 GIF2, GRF1-interacting factor 2 -0.150 1.271
119 261043_at AT1G01220 AtFKGP, Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, FKGP, L-fucokinase/GDP-L-fucose pyrophosphorylase -0.148 -0.144
120 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 -0.147 -2.624
121 249191_at AT5G42760 [Leucine carboxyl methyltransferase] -0.146 -3.921
122 267515_at AT2G45680 TCP9, TCP domain protein 9 -0.145 0.817
123 253405_at AT4G32800 [Integrase-type DNA-binding superfamily protein] -0.143 -1.192
124 265634_at AT2G25530 [AFG1-like ATPase family protein] -0.143 -2.780
125 262212_at AT1G74890 ARR15, response regulator 15 -0.142 -4.183
126 248820_at AT5G47060 unknown -0.141 -0.697
127 249622_at AT5G37550 unknown -0.141 -4.862
128 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.138 0.873
129 251593_at AT3G57660 NRPA1, nuclear RNA polymerase A1 -0.137 -0.579
130 254235_at AT4G23750 CRF2, cytokinin response factor 2, TMO3, TARGET OF MONOPTEROS 3 -0.135 -0.261
131 258965_at AT3G10530 [Transducin/WD40 repeat-like superfamily protein] -0.135 -0.505
132 261044_at AT1G01290 CNX3, cofactor of nitrate reductase and xanthine dehydrogenase 3 -0.134 0.694
133 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 -0.134 0.729
134 261048_at AT1G01420 UGT72B3, UDP-glucosyl transferase 72B3 -0.131 0.940
135 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.130 -1.734
136 247612_at AT5G60730 [Anion-transporting ATPase] -0.130 -2.093
137 256188_at AT1G30160 unknown -0.129 1.594
138 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D -0.128 -1.631
139 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 -0.127 -2.862
140 258545_at AT3G07050 NSN1, nucleostemin-like 1 -0.124 -0.256
141 254240_at AT4G23496 SP1L5, SPIRAL1-like5 -0.123 -0.868
142 256675_at AT3G52170 [DNA binding] -0.123 -1.014
143 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -0.122 -5.181
144 245560_at AT4G15480 UGT84A1 -0.122 -1.096
145 261055_at AT1G01300 [Eukaryotic aspartyl protease family protein] -0.121 1.480
146 245762_at AT1G27880 [DEAD/DEAH box RNA helicase family protein ] -0.120 -1.819
147 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 -0.119 -1.852
148 257074_at AT3G19660 unknown -0.117 0.275
149 262004_at AT1G64480 CBL8, calcineurin B-like protein 8 -0.116 -0.175
150 257262_at AT3G21890 BBX31, B-box domain protein 31 -0.116 -5.611
151 257511_at AT1G43000 [PLATZ transcription factor family protein] -0.116 -2.655
152 258677_at AT3G08730 ATPK1, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, ATPK6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ATS6K1, PK1, protein-serine kinase 1, PK6, ROTEIN-SERINE KINASE 6, S6K1, P70 RIBOSOMAL S6 KINASE -0.115 0.012
153 259363_at AT1G13270 MAP1B, METHIONINE AMINOPEPTIDASE 1B, MAP1C, methionine aminopeptidase 1B -0.114 -0.229
154 260475_at AT1G11080 scpl31, serine carboxypeptidase-like 31 -0.113 2.556
155 248429_at AT5G51770 [Protein kinase superfamily protein] -0.113 -0.221
156 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 -0.113 -0.175
157 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] -0.113 -2.191
158 246274_at AT4G36620 GATA19, GATA transcription factor 19, HANL2, hanaba taranu like 2 -0.112 -1.412
159 260631_at AT1G62350 [Pentatricopeptide repeat (PPR) superfamily protein] -0.112 -0.513
160 252864_at AT4G39740 HCC2, homologue of copper chaperone SCO1 2 -0.111 -1.027
161 249458_at AT5G39560 [Galactose oxidase/kelch repeat superfamily protein] -0.109 -0.175
162 247046_at AT5G66540 unknown -0.109 -0.761
163 248185_at AT5G54060 UF3GT, UDP-glucose:flavonoid 3-o-glucosyltransferase, UGT79B1, UDP-glucosyl transferase 79B1 -0.108 0.205
164 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 -0.107 -2.227
165 258861_at AT3G02060 [DEAD/DEAH box helicase, putative] -0.106 0.536
166 264646_at AT1G08860 BON3, BONZAI 3 -0.106 -4.358
167 252442_at AT3G46940 DUT1, DUTP-PYROPHOSPHATASE-LIKE 1 -0.104 -4.257
168 256797_at AT3G18600 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.104 -0.256
169 248841_at AT5G46740 UBP21, ubiquitin-specific protease 21 -0.104 -1.638
170 261907_at AT1G65060 4CL3, 4-coumarate:CoA ligase 3 -0.103 -4.531
171 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 -0.103 -1.798
172 255465_at AT4G02990 BSM, BELAYA SMERT, RUG2, RUGOSA 2 -0.102 0.097
173 246966_at AT5G24850 CRY3, cryptochrome 3 -0.102 -2.866
174 252010_at AT3G52740 unknown -0.100 -3.156
175 246461_at AT5G16930 [AAA-type ATPase family protein] -0.100 -1.337
176 251090_at AT5G01340 AtmSFC1, mSFC1, mitochondrial succinate-fumarate carrier 1 -0.099 0.590
177 261263_at AT1G26790 [Dof-type zinc finger DNA-binding family protein] -0.099 -5.403
178 256511_at AT1G33390 ATFAS4, FASCIATED STEM 4, FAS4, FASCIATED STEM 4 -0.099 -1.119
179 253471_at AT4G32220 [gypsy-like retrotransposon family, has a 4.8e-57 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.099 -0.175
180 266801_at AT2G22870 EMB2001, embryo defective 2001 -0.099 -1.927
181 263975_at AT2G42710 [Ribosomal protein L1p/L10e family] -0.098 -1.098
182 258701_at AT3G09720 AtRH57, RH57, RNA helicase 57 -0.098 -0.474
183 258202_at AT3G13940 [DNA binding] -0.098 -0.461
184 253777_at AT4G28450 [nucleotide binding] -0.097 -0.458
185 259537_at AT1G12370 PHR1, photolyase 1, UVR2, UV RESISTANCE 2 -0.097 -5.627
186 265474_at AT2G15690 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.097 -0.090
187 261972_at AT1G64600 [methyltransferases] -0.097 -0.090