4.0:Information of module
penta mutant (higher order mutant)
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 1.018e-08
GO:0010035 response to inorganic substance BP 2.702e-07
GO:0065007 biological regulation BP 3.785e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010224 response to UV-B BP 7.394e-16
GO:0042254 ribosome biogenesis BP 1.765e-13
GO:0055086 nucleobase-containing small molecule met... BP 3.188e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
penta mutant (higher order mutant)		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 251196_at AT3G62950 [Thioredoxin superfamily protein] 0.583 -0.685
2 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 0.535 -1.205
3 249202_at AT5G42580 CYP705A12, cytochrome P450, family 705, subfamily A, polypeptide 12 0.450 -0.324
4 248729_at AT5G48010 AtTHAS1, Arabidopsis thaliana thalianol synthase 1, THAS, THALIANOL SYNTHASE, THAS1, thalianol synthase 1 0.420 -0.725
5 258225_at AT3G15630 unknown 0.306 0.342
6 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 0.301 0.450
7 249205_at AT5G42600 MRN1, marneral synthase 1 0.264 -0.315
8 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 0.259 0.084
9 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 0.254 -0.851
10 261567_at AT1G33055 unknown 0.244 0.578
11 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE 0.237 0.586
12 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] 0.236 0.449
13 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] 0.235 -0.614
14 251221_at AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.235 -0.540
15 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.229 -0.907
16 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 0.225 -0.882
17 248432_at AT5G51390 unknown 0.225 -0.958
18 262301_at AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.218 -0.972
19 259982_at AT1G76410 ATL8 0.218 -0.535
20 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] 0.218 1.076
21 254909_at AT4G11210 [Disease resistance-responsive (dirigent-like protein) family protein] 0.215 -0.553
22 261157_at AT1G34510 [Peroxidase superfamily protein] 0.212 -0.024
23 259364_at AT1G13260 EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, related to ABI3/VP1 1 0.208 -0.147
24 259977_at AT1G76590 [PLATZ transcription factor family protein] 0.204 -0.657
25 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 0.202 -0.310
26 248728_at AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 0.190 -0.483
27 245602_at AT4G14270 unknown 0.189 0.401
28 262549_at AT1G31290 AGO3, ARGONAUTE 3 0.188 0.024
29 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] 0.187 -1.086
30 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 0.183 -0.030
31 262756_at AT1G16370 ATOCT6, ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, OCT6, organic cation/carnitine transporter 6 0.182 -0.491
32 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] 0.181 -0.906
33 258939_at AT3G10020 unknown 0.176 0.237
34 260431_at AT1G68190 BBX27, B-box domain protein 27 0.176 0.431
35 252250_at AT3G49790 [Carbohydrate-binding protein] 0.176 0.158
36 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 0.174 -0.152
37 254424_at AT4G21510 AtFBS2, FBS2, F-box stress induced 2 0.174 0.003
38 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.173 -0.953
39 250381_at AT5G11610 [Exostosin family protein] 0.171 -0.295
40 249203_at AT5G42590 CYP71A16, cytochrome P450, family 71, subfamily A, polypeptide 16, MRO, marneral oxidase 0.171 -0.859
41 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.170 -0.203
42 261395_at AT1G79700 WRI4, WRINKLED 4 0.169 -0.971
43 261265_at AT1G26800 [RING/U-box superfamily protein] 0.169 -0.517
44 263594_at AT2G01880 ATPAP7, PURPLE ACID PHOSPHATASE 7, PAP7, purple acid phosphatase 7 0.168 -0.462
45 264467_at AT1G10140 [Uncharacterised conserved protein UCP031279] 0.168 -0.334
46 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 0.168 -0.165
47 256098_at AT1G13700 PGL1, 6-phosphogluconolactonase 1 0.166 -0.516
48 249941_at AT5G22270 unknown 0.165 -0.407
49 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 0.164 1.214
50 246195_at AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 0.164 -0.153
51 265067_at AT1G03850 ATGRXS13, glutaredoxin 13, GRXS13, glutaredoxin 13 0.163 0.637
52 265031_at AT1G61590 [Protein kinase superfamily protein] 0.158 0.111
53 255568_at AT4G01250 AtWRKY22, WRKY22 0.157 0.135
54 247293_at AT5G64510 TIN1, tunicamycin induced 1 0.156 -0.389
55 265987_at AT2G24240 [BTB/POZ domain with WD40/YVTN repeat-like protein] 0.154 -0.036
56 257774_at AT3G29250 AtSDR4, SDR4, short-chain dehydrogenase reductase 4 0.153 0.405
57 267477_at AT2G02710 PLP, PAS/LOV PROTEIN, PLPA, PAS/LOV PROTEIN A, PLPB, PAS/LOV protein B, PLPC, PAS/LOV PROTEIN C 0.152 0.507
58 246888_at AT5G26270 unknown 0.151 0.325
59 254665_at AT4G18340 [Glycosyl hydrolase superfamily protein] 0.151 -0.128
60 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] 0.151 -0.148
61 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.150 0.401
62 263953_at AT2G36050 ATOFP15, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, OFP15, ovate family protein 15 0.150 -0.405
63 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] 0.149 0.725
64 265481_at AT2G15960 unknown 0.148 -0.526
65 247867_at AT5G57630 CIPK21, CBL-interacting protein kinase 21, SnRK3.4, SNF1-RELATED PROTEIN KINASE 3.4 0.143 -0.597
66 262010_at AT1G35612 [expressed protein] 0.143 0.040
67 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 0.143 0.107
68 254301_at AT4G22790 [MATE efflux family protein] 0.140 -1.202
69 247754_at AT5G59080 unknown 0.140 -0.198
70 266016_at AT2G18670 [RING/U-box superfamily protein] 0.139 0.962
71 247585_at AT5G60680 unknown 0.139 -0.121
72 249128_at AT5G43440 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.137 -0.799
73 259252_at AT3G07610 IBM1, increase in bonsai methylation 1 0.137 -0.370
74 249848_at AT5G23220 NIC3, nicotinamidase 3 0.136 -0.266
75 256935_at AT3G22570 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.135 -0.211
76 254193_at AT4G23870 unknown 0.135 -0.828
77 250132_at AT5G16560 KAN, KANADI, KAN1, KANADI 1 0.135 -0.344
78 252464_at AT3G47160 [RING/U-box superfamily protein] 0.135 0.220
79 252175_at AT3G50700 AtIDD2, indeterminate(ID)-domain 2, IDD2, indeterminate(ID)-domain 2 0.134 -0.499
80 261453_at AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 0.132 -0.176
81 259846_at AT1G72140 [Major facilitator superfamily protein] 0.132 -0.192
82 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 0.130 -0.139
83 248204_at AT5G54280 ATM2, myosin 2, ATM4, ARABIDOPSIS THALIANA MYOSIN 4, ATMYOS1, ARABIDOPSIS THALIANA MYOSIN 1 0.129 -0.742
84 250810_at AT5G05090 [Homeodomain-like superfamily protein] 0.128 -0.629
85 259163_at AT3G01490 [Protein kinase superfamily protein] 0.128 -0.218
86 259160_at AT3G05410 [Photosystem II reaction center PsbP family protein] 0.127 -0.148
87 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.127 -0.781
88 265246_at AT2G43050 ATPMEPCRD 0.126 -0.050
89 261292_at AT1G36940 unknown 0.125 -0.910
90 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 0.125 -1.372
91 255980_at AT1G33970 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.124 0.455
92 262170_at AT1G74940 unknown 0.124 -0.013
93 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 0.123 0.043
94 256420_at AT1G33475 [SNARE-like superfamily protein] 0.122 -1.075
95 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 -0.392 -0.444
96 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 -0.293 1.323
97 246228_at AT4G36430 [Peroxidase superfamily protein] -0.290 0.219
98 247463_at AT5G62210 [Embryo-specific protein 3, (ATS3)] -0.234 -0.682
99 258807_at AT3G04030 MYR2 -0.232 -0.766
100 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 -0.225 -0.766
101 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 -0.205 -0.299
102 261027_at AT1G01340 ACBK1, ATCNGC10, cyclic nucleotide gated channel 10, CNGC10, cyclic nucleotide gated channel 10 -0.204 -0.880
103 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 -0.199 0.143
104 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -0.192 0.875
105 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 -0.177 1.816
106 263005_at AT1G54540 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.176 -0.942
107 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] -0.176 -0.231
108 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 -0.169 0.247
109 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -0.167 -0.527
110 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -0.159 0.259
111 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 -0.158 -0.523
112 257456_at AT2G18120 SRS4, SHI-related sequence 4 -0.157 0.521
113 247024_at AT5G66985 unknown -0.154 1.281
114 261052_at AT1G01440 unknown -0.153 -0.662
115 245401_at AT4G17670 unknown -0.152 0.414
116 250702_at AT5G06730 [Peroxidase superfamily protein] -0.151 -1.114
117 249614_at AT5G37300 WSD1 -0.150 -0.353
118 261582_at AT1G01160 GIF2, GRF1-interacting factor 2 -0.150 -0.093
119 261043_at AT1G01220 AtFKGP, Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, FKGP, L-fucokinase/GDP-L-fucose pyrophosphorylase -0.148 0.315
120 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 -0.147 -0.123
121 249191_at AT5G42760 [Leucine carboxyl methyltransferase] -0.146 -1.037
122 267515_at AT2G45680 TCP9, TCP domain protein 9 -0.145 -0.283
123 253405_at AT4G32800 [Integrase-type DNA-binding superfamily protein] -0.143 -0.366
124 265634_at AT2G25530 [AFG1-like ATPase family protein] -0.143 0.667
125 262212_at AT1G74890 ARR15, response regulator 15 -0.142 -0.848
126 248820_at AT5G47060 unknown -0.141 1.235
127 249622_at AT5G37550 unknown -0.141 0.568
128 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.138 0.084
129 251593_at AT3G57660 NRPA1, nuclear RNA polymerase A1 -0.137 -0.169
130 254235_at AT4G23750 CRF2, cytokinin response factor 2, TMO3, TARGET OF MONOPTEROS 3 -0.135 0.048
131 258965_at AT3G10530 [Transducin/WD40 repeat-like superfamily protein] -0.135 0.301
132 261044_at AT1G01290 CNX3, cofactor of nitrate reductase and xanthine dehydrogenase 3 -0.134 0.102
133 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 -0.134 0.045
134 261048_at AT1G01420 UGT72B3, UDP-glucosyl transferase 72B3 -0.131 0.093
135 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.130 0.231
136 247612_at AT5G60730 [Anion-transporting ATPase] -0.130 -0.269
137 256188_at AT1G30160 unknown -0.129 -0.601
138 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D -0.128 -1.428
139 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 -0.127 0.030
140 258545_at AT3G07050 NSN1, nucleostemin-like 1 -0.124 1.126
141 254240_at AT4G23496 SP1L5, SPIRAL1-like5 -0.123 -0.527
142 256675_at AT3G52170 [DNA binding] -0.123 0.026
143 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -0.122 0.767
144 245560_at AT4G15480 UGT84A1 -0.122 -0.128
145 261055_at AT1G01300 [Eukaryotic aspartyl protease family protein] -0.121 0.759
146 245762_at AT1G27880 [DEAD/DEAH box RNA helicase family protein ] -0.120 -0.361
147 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 -0.119 0.660
148 257074_at AT3G19660 unknown -0.117 -0.523
149 262004_at AT1G64480 CBL8, calcineurin B-like protein 8 -0.116 -1.307
150 257262_at AT3G21890 BBX31, B-box domain protein 31 -0.116 -0.318
151 257511_at AT1G43000 [PLATZ transcription factor family protein] -0.116 -0.870
152 258677_at AT3G08730 ATPK1, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, ATPK6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ATS6K1, PK1, protein-serine kinase 1, PK6, ROTEIN-SERINE KINASE 6, S6K1, P70 RIBOSOMAL S6 KINASE -0.115 1.559
153 259363_at AT1G13270 MAP1B, METHIONINE AMINOPEPTIDASE 1B, MAP1C, methionine aminopeptidase 1B -0.114 0.722
154 260475_at AT1G11080 scpl31, serine carboxypeptidase-like 31 -0.113 -1.202
155 248429_at AT5G51770 [Protein kinase superfamily protein] -0.113 0.100
156 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 -0.113 0.594
157 260955_at AT1G06000 [UDP-Glycosyltransferase superfamily protein] -0.113 0.288
158 246274_at AT4G36620 GATA19, GATA transcription factor 19, HANL2, hanaba taranu like 2 -0.112 -1.011
159 260631_at AT1G62350 [Pentatricopeptide repeat (PPR) superfamily protein] -0.112 0.087
160 252864_at AT4G39740 HCC2, homologue of copper chaperone SCO1 2 -0.111 1.047
161 249458_at AT5G39560 [Galactose oxidase/kelch repeat superfamily protein] -0.109 0.156
162 247046_at AT5G66540 unknown -0.109 0.333
163 248185_at AT5G54060 UF3GT, UDP-glucose:flavonoid 3-o-glucosyltransferase, UGT79B1, UDP-glucosyl transferase 79B1 -0.108 -0.500
164 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 -0.107 0.020
165 258861_at AT3G02060 [DEAD/DEAH box helicase, putative] -0.106 0.388
166 264646_at AT1G08860 BON3, BONZAI 3 -0.106 -0.486
167 252442_at AT3G46940 DUT1, DUTP-PYROPHOSPHATASE-LIKE 1 -0.104 0.488
168 256797_at AT3G18600 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.104 0.301
169 248841_at AT5G46740 UBP21, ubiquitin-specific protease 21 -0.104 0.112
170 261907_at AT1G65060 4CL3, 4-coumarate:CoA ligase 3 -0.103 -0.196
171 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 -0.103 0.071
172 255465_at AT4G02990 BSM, BELAYA SMERT, RUG2, RUGOSA 2 -0.102 1.182
173 246966_at AT5G24850 CRY3, cryptochrome 3 -0.102 0.566
174 252010_at AT3G52740 unknown -0.100 0.368
175 246461_at AT5G16930 [AAA-type ATPase family protein] -0.100 0.482
176 251090_at AT5G01340 AtmSFC1, mSFC1, mitochondrial succinate-fumarate carrier 1 -0.099 0.867
177 261263_at AT1G26790 [Dof-type zinc finger DNA-binding family protein] -0.099 -0.748
178 256511_at AT1G33390 ATFAS4, FASCIATED STEM 4, FAS4, FASCIATED STEM 4 -0.099 0.989
179 253471_at AT4G32220 [gypsy-like retrotransposon family, has a 4.8e-57 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.099 -1.152
180 266801_at AT2G22870 EMB2001, embryo defective 2001 -0.099 -0.262
181 263975_at AT2G42710 [Ribosomal protein L1p/L10e family] -0.098 0.966
182 258701_at AT3G09720 AtRH57, RH57, RNA helicase 57 -0.098 -0.248
183 258202_at AT3G13940 [DNA binding] -0.098 0.970
184 253777_at AT4G28450 [nucleotide binding] -0.097 0.718
185 259537_at AT1G12370 PHR1, photolyase 1, UVR2, UV RESISTANCE 2 -0.097 0.402
186 265474_at AT2G15690 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.097 -0.035
187 261972_at AT1G64600 [methyltransferases] -0.097 0.086