4.0:Information of module
shoot hypoxia total
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0007154 cell communication BP 1.915e-13
GO:0006950 response to stress BP 8.549e-13
GO:0051716 cellular response to stimulus BP 1.302e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0071554 cell wall organization or biogenesis BP 5.422e-05
GO:0048731 system development BP 6.286e-05
GO:0010073 meristem maintenance BP 1.106e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot hypoxia total		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 250464_at AT5G10040 unknown 1.483 0.145
2 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 1.191 0.254
3 259879_at AT1G76650 CML38, calmodulin-like 38 1.154 0.001
4 247024_at AT5G66985 unknown 1.127 0.043
5 252882_at AT4G39675 unknown 1.056 0.076
6 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 1.010 -0.075
7 247431_at AT5G62520 SRO5, similar to RCD one 5 0.978 -0.036
8 260668_at AT1G19530 unknown 0.899 0.007
9 253298_at AT4G33560 [Wound-responsive family protein] 0.846 0.133
10 245226_at AT3G29970 [B12D protein] 0.846 -0.149
11 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.845 0.028
12 257925_at AT3G23170 unknown 0.832 -0.058
13 246001_at AT5G20790 unknown 0.831 0.035
14 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.818 -0.222
15 254300_at AT4G22780 ACR7, ACT domain repeat 7 0.813 -0.094
16 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.798 -0.005
17 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.785 -0.030
18 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.781 0.066
19 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 0.755 0.078
20 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 0.752 0.109
21 261567_at AT1G33055 unknown 0.734 -0.054
22 251026_at AT5G02200 FHL, far-red-elongated hypocotyl1-like 0.725 -0.076
23 255807_at AT4G10270 [Wound-responsive family protein] 0.720 -0.027
24 257654_at AT3G13310 DJC66, DNA J protein C66 0.710 0.186
25 263391_at AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C 0.705 0.092
26 249384_at AT5G39890 unknown 0.632 -0.007
27 254200_at AT4G24110 unknown 0.620 -0.113
28 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.615 0.033
29 253573_at AT4G31020 [alpha/beta-Hydrolases superfamily protein] 0.611 0.096
30 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 0.605 0.058
31 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.589 -0.112
32 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 0.576 -0.104
33 264647_at AT1G09090 ATRBOHB, respiratory burst oxidase homolog B, ATRBOHB-BETA, RBOHB, respiratory burst oxidase homolog B 0.571 -0.036
34 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.568 -0.005
35 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.562 -0.082
36 250152_at AT5G15120 unknown 0.559 -0.022
37 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.531 -0.027
38 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.517 -0.046
39 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 0.516 -0.133
40 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] 0.512 0.211
41 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.510 -0.319
42 264836_at AT1G03610 unknown 0.499 -0.205
43 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] 0.497 0.147
44 264436_at AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 0.497 0.274
45 261684_at AT1G47400 unknown 0.496 -0.201
46 253404_at AT4G32840 PFK6, phosphofructokinase 6 0.493 0.057
47 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.487 -0.078
48 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.482 -0.189
49 261717_at AT1G18400 BEE1, BR enhanced expression 1 0.481 -0.042
50 252427_at AT3G47640 PYE, POPEYE 0.480 0.164
51 258856_at AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 0.478 0.186
52 262164_at AT1G78070 [Transducin/WD40 repeat-like superfamily protein] 0.477 0.018
53 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.582 0.115
54 260070_at AT1G73830 BEE3, BR enhanced expression 3 -0.563 -0.493
55 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 -0.401 0.014
56 247768_at AT5G58900 [Homeodomain-like transcriptional regulator] -0.396 0.007
57 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 -0.334 -0.075
58 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 -0.316 0.037
59 260806_at AT1G78260 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.307 -0.561
60 251791_at AT3G55500 ATEXP16, ATEXPA16, expansin A16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16, EXPA16, expansin A16 -0.301 0.055
61 261395_at AT1G79700 WRI4, WRINKLED 4 -0.301 -0.051
62 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 -0.300 -0.266
63 245098_at AT2G40940 ERS, ETHYLENE RESPONSE SENSOR, ERS1, ethylene response sensor 1 -0.278 -0.047
64 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 -0.269 -0.029
65 245166_at AT2G33170 [Leucine-rich repeat receptor-like protein kinase family protein] -0.268 -0.014
66 258552_at AT3G07010 [Pectin lyase-like superfamily protein] -0.263 -0.109
67 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 -0.260 0.175
68 245070_at AT2G23240 AtMT4b, Arabidopsis thaliana metallothionein 4b -0.252 0.025
69 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 -0.248 0.030
70 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 -0.240 -0.188
71 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -0.239 -0.020
72 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 -0.237 0.103
73 251178_at AT3G63440 ATCKX6, CYTOKININ OXIDASE 6, ATCKX7, CKX6, cytokinin oxidase/dehydrogenase 6 -0.236 0.187
74 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] -0.232 0.092
75 254639_at AT4G18750 DOT4, DEFECTIVELY ORGANIZED TRIBUTARIES 4 -0.232 0.021
76 259579_at AT1G28010 ABCB14, ATP-binding cassette B14, ATABCB14, Arabidopsis thaliana ATP-binding cassette B14, MDR12, multi-drug resistance 12, PGP14, P-glycoprotein 14 -0.228 -0.200
77 259763_at AT1G77630 LYM3, lysin-motif (LysM) domain protein 3, LYP3, LysM-containing receptor protein 3 -0.228 0.119
78 252989_at AT4G38420 sks9, SKU5 similar 9 -0.225 0.091
79 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 -0.222 0.029
80 247085_at AT5G66310 [ATP binding microtubule motor family protein] -0.217 0.022
81 259845_at AT1G73590 ATPIN1, ARABIDOPSIS THALIANA PIN-FORMED 1, PIN1, PIN-FORMED 1 -0.211 0.156
82 260221_at AT1G74670 GASA6, GA-stimulated Arabidopsis 6 -0.208 -0.050
83 262060_at AT1G80170 [Pectin lyase-like superfamily protein] -0.200 -0.090
84 248841_at AT5G46740 UBP21, ubiquitin-specific protease 21 -0.199 -0.489
85 257056_at AT3G15350 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.197 -0.240
86 259982_at AT1G76410 ATL8 -0.195 0.105
87 262624_at AT1G06450 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] -0.192 0.035
88 246893_at AT5G25520 [SPOC domain / Transcription elongation factor S-II protein] -0.186 -0.080
89 253525_at AT4G31330 unknown -0.184 -0.054
90 250424_at AT5G10550 GTE2, global transcription factor group E2 -0.183 -0.042
91 263957_at AT2G35880 [TPX2 (targeting protein for Xklp2) protein family] -0.182 0.049
92 247322_at AT5G64090 unknown -0.178 -0.005
93 251326_at AT3G61590 HS, HWS, HAWAIIAN SKIRT -0.177 -0.071
94 263618_at AT2G04660 APC2, anaphase-promoting complex/cyclosome 2 -0.176 -0.151
95 258034_at AT3G21300 [RNA methyltransferase family protein] -0.176 -0.050
96 259394_at AT1G06420 unknown -0.176 -0.053
97 245343_at AT4G15830 [ARM repeat superfamily protein] -0.175 -0.105
98 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 -0.173 -0.078
99 246714_at AT5G28220 [Protein prenylyltransferase superfamily protein] -0.171 0.024
100 251788_at AT3G55420 unknown -0.170 -0.055
101 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.169 -0.048
102 262785_at AT1G10750 unknown -0.167 0.248
103 260819_at AT1G06850 AtbZIP52, basic leucine-zipper 52, bZIP52, basic leucine-zipper 52 -0.167 -0.023