4.0:Information of module
shoot hypoxia pRBCS
In comparison with 1 h Light IP RNA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009657 plastid organization BP 1.314e-04
GO:0006091 generation of precursor metabolites and ... BP 1.351e-04
GO:0019693 ribose phosphate metabolic process BP 1.725e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.881e-53
GO:0015979 photosynthesis BP 1.098e-30
GO:0006091 generation of precursor metabolites and ... BP 5.098e-23
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot hypoxia pRBCS		 Log2 signal ratio
1 h Light IP RNA
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.748 -0.007
2 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.543 0.046
3 248102_at AT5G55140 [ribosomal protein L30 family protein] 0.507 0.149
4 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.475 0.199
5 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.470 -0.022
6 259432_at AT1G01520 ASG4, ALTERED SEED GERMINATION 4 0.439 0.086
7 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.434 -0.034
8 264201_at AT1G22630 unknown 0.395 0.137
9 251985_at AT3G53220 [Thioredoxin superfamily protein] 0.388 0.061
10 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 0.369 0.121
11 266717_at AT2G46735 unknown 0.365 0.192
12 261629_at AT1G49980 [DNA/RNA polymerases superfamily protein] 0.360 -0.005
13 261110_at AT1G75440 UBC16, ubiquitin-conjugating enzyme 16 0.356 -0.034
14 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.354 0.064
15 253607_at AT4G30330 [Small nuclear ribonucleoprotein family protein] 0.339 0.124
16 249441_at AT5G39730 [AIG2-like (avirulence induced gene) family protein] 0.336 -0.001
17 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.330 0.119
18 259423_at AT1G13880 [ELM2 domain-containing protein] 0.329 -0.041
19 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.325 0.112
20 261516_at AT1G71750 HGPT, Hypoxanthine-guanine phosphoribosyltransferase 0.324 0.085
21 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.315 0.014
22 266237_at AT2G29540 ATRPAC14, ATRPC14, RNApolymerase 14 kDa subunit, RPC14, RNApolymerase 14 kDa subunit 0.313 0.113
23 249648_at AT5G37050 unknown 0.313 0.075
24 246757_at AT5G27940 WPP3, WPP domain protein 3 0.304 0.006
25 260776_at AT1G14580 [C2H2-like zinc finger protein] 0.303 0.046
26 257081_at AT3G30460 [RING/U-box superfamily protein] 0.302 0.063
27 249834_at AT5G23440 FTRA1, ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 0.300 0.017
28 247632_at AT5G60460 [Preprotein translocase Sec, Sec61-beta subunit protein] 0.296 0.117
29 265044_at AT1G03950 VPS2.3, vacuolar protein sorting-associated protein 2.3 0.296 0.052
30 257058_at AT3G15352 ATCOX17, ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, COX17, cytochrome c oxidase 17 0.295 0.081
31 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 0.289 0.166
32 253917_at AT4G27380 unknown 0.288 0.162
33 253830_at AT4G27652 unknown 0.286 0.029
34 250881_at AT5G04080 unknown 0.286 -0.018
35 252661_at AT3G44450 unknown 0.283 0.802
36 256653_at AT3G18870 [Mitochondrial transcription termination factor family protein] 0.283 0.063
37 262049_at AT1G80180 unknown 0.281 -0.038
38 248028_at AT5G55620 unknown 0.278 0.178
39 249260_at AT5G41680 [Protein kinase superfamily protein] 0.277 0.066
40 267636_at AT2G42110 unknown 0.273 -0.014
41 266566_at AT2G24040 [Low temperature and salt responsive protein family] 0.273 0.069
42 265183_at AT1G23750 [Nucleic acid-binding, OB-fold-like protein] 0.272 0.099
43 253305_at AT4G33666 unknown 0.271 0.043
44 263597_at AT2G01870 unknown 0.269 0.180
45 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.269 0.199
46 249878_at AT5G23090 NF-YB13, nuclear factor Y, subunit B13 0.266 -0.058
47 258595_at AT3G04500 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.265 0.003
48 246462_at AT5G16940 [carbon-sulfur lyases] 0.265 0.106
49 245747_at AT1G51100 CRR41, CHLORORESPIRATORY REDUCTION 41 0.264 0.249
50 247793_at AT5G58650 PSY1, plant peptide containing sulfated tyrosine 1 0.264 -0.105
51 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.260 -0.077
52 249109_at AT5G43700 ATAUX2-11, AUXIN INDUCIBLE 2-11, IAA4, indole-3-acetic acid inducible 4 0.260 -0.048
53 248261_at AT5G53280 PDV1, PLASTID DIVISION1 0.259 0.135
54 254624_at AT4G18580 unknown 0.254 0.018
55 261247_at AT1G20070 unknown 0.253 0.454
56 258002_at AT3G28930 AIG2, AVRRPT2-INDUCED GENE 2 0.250 -0.017
57 249191_at AT5G42760 [Leucine carboxyl methyltransferase] 0.249 0.236
58 254611_at AT4G19095 unknown 0.249 0.039
59 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B 0.243 0.017
60 246936_at AT5G25360 unknown 0.242 0.082
61 264692_at AT1G70000 [myb-like transcription factor family protein] 0.241 0.121
62 252041_at AT3G52090 ATRPB13.6, NRPB11, NRPD11, NRPE11 0.239 0.039
63 252565_at AT3G46000 ADF2, actin depolymerizing factor 2 0.237 0.014
64 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.236 -0.060
65 251036_at AT5G02160 unknown 0.235 0.000
66 265025_at AT1G24575 unknown 0.232 -0.001
67 257262_at AT3G21890 BBX31, B-box domain protein 31 0.232 0.331
68 262367_at AT1G73030 CHMP1A, CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1A, VPS46.2 0.231 -0.023
69 252935_at AT4G39150 [DNAJ heat shock N-terminal domain-containing protein] 0.229 0.006
70 262389_at AT1G49270 AtPERK7, proline-rich extensin-like receptor kinase 7, PERK7, proline-rich extensin-like receptor kinase 7 0.228 0.071
71 261409_at AT1G07640 OBP2, URP3, UAS-TAGGED ROOT PATTERNING3 0.228 0.087
72 260004_at AT1G67860 unknown 0.227 -0.009
73 263630_at AT2G04845 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.225 0.043
74 246007_at AT5G08410 FTRA2, ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 0.224 0.093
75 265676_at AT2G32070 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.223 0.055
76 246497_at AT5G16220 [Octicosapeptide/Phox/Bem1p family protein] 0.222 0.063
77 249863_at AT5G22950 VPS24.1 0.222 -0.020
78 256527_at AT1G66100 [Plant thionin] 0.220 0.002
79 251393_at AT3G60640 ATG8G, AUTOPHAGY 8G 0.220 -0.028
80 254355_at AT4G22380 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.218 0.057
81 244981_at ATCG00770 RPS8, ribosomal protein S8 -1.002 -0.283
82 266393_at AT2G41260 ATM17, M17 -0.996 -0.238
83 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.991 -0.296
84 245025_at ATCG00130 ATPF -0.972 -0.348
85 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 -0.962 -0.047
86 244966_at ATCG00600 PETG -0.933 -0.140
87 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.873 0.061
88 244973_at ATCG00690 PSBT, photosystem II reaction center protein T, PSBTC -0.867 -0.544
89 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -0.865 -0.020
90 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.864 -0.198
91 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.858 -0.103
92 244965_at ATCG00590 ORF31 -0.838 0.092
93 244936_at ATCG01100 NDHA -0.826 -0.225
94 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.792 -0.008
95 257130_at AT3G20210 DELTA-VPE, delta vacuolar processing enzyme, DELTAVPE, DELTA VACUOLAR PROCESSING ENZYME -0.786 -0.210
96 257334_at ATMG01370 ORF111D -0.786 -0.087
97 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.782 -0.141
98 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.777 -0.120
99 245008_at ATCG00360 YCF3 -0.759 -0.043
100 244932_at ATCG01060 PSAC -0.716 -0.152
101 245017_at ATCG00510 PSAI, photsystem I subunit I -0.710 -0.148
102 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.696 -0.114
103 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.677 0.001
104 245002_at ATCG00270 PSBD, photosystem II reaction center protein D -0.676 -0.227
105 251838_at AT3G54940 [Papain family cysteine protease] -0.676 -0.099
106 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.675 -0.157
107 244933_at ATCG01070 NDHE -0.671 -0.159
108 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.643 -0.139
109 261981_at AT1G33811 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.643 -0.023
110 244998_at ATCG00180 RPOC1 -0.636 -0.105
111 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.634 -0.178
112 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.633 -0.087
113 244934_at ATCG01080 NDHG -0.628 -0.235
114 245026_at ATCG00140 ATPH -0.627 -0.242
115 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.617 -0.126
116 244967_at ATCG00630 PSAJ -0.617 0.047
117 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.604 -0.113
118 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.600 -0.221
119 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.586 -0.134
120 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.586 -0.149
121 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.585 -0.125
122 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.579 -0.108
123 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.576 -0.108
124 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.573 0.025
125 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.563 0.054
126 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 -0.562 -0.117
127 245019_at ATCG00530 YCF10 -0.560 -0.188
128 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.559 -0.168
129 260166_at AT1G79840 GL2, GLABRA 2 -0.553 -0.069
130 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.551 -0.135
131 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.550 -0.162
132 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.549 -0.155
133 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.534 -0.017
134 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 -0.529 -0.120
135 245004_at ATCG00300 YCF9 -0.528 -0.129
136 251942_at AT3G53480 ABCG37, ATP-binding cassette G37, ATPDR9, PLEIOTROPIC DRUG RESISTANCE 9, PDR9, pleiotropic drug resistance 9, PIS1, polar auxin transport inhibitor sensitive 1 -0.522 -0.121
137 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.521 -0.070
138 244997_at ATCG00170 RPOC2 -0.520 -0.007
139 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.518 0.006
140 253191_at AT4G35350 XCP1, xylem cysteine peptidase 1 -0.518 -0.053
141 247297_at AT5G64100 [Peroxidase superfamily protein] -0.515 -0.088
142 245018_at ATCG00520 YCF4 -0.510 -0.273
143 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.502 -0.114
144 245015_at ATCG00490 RBCL -0.497 -0.085
145 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.493 -0.105
146 248728_at AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 -0.493 -0.079
147 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.492 0.080
148 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.485 -0.108
149 250868_at AT5G03860 MLS, malate synthase -0.484 -0.181
150 267459_at AT2G33850 unknown -0.483 -0.027
151 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.482 -0.158
152 257333_at ATMG01360 COX1, cytochrome oxidase -0.481 -0.037
153 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.475 -0.181
154 262260_at AT1G70850 MLP34, MLP-like protein 34 -0.475 -0.028
155 245000_at ATCG00210 YCF6 -0.469 -0.006
156 259578_at AT1G27990 unknown -0.468 0.030
157 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.461 -0.168
158 245006_at ATCG00340 PSAB -0.458 -0.172
159 249567_at AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.458 -0.029