4.0:Information of module
shoot hypoxia pRBCS
In comparison with root epidermis and lateral root cap 40 mM NaCl help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009657 plastid organization BP 1.314e-04
GO:0006091 generation of precursor metabolites and ... BP 1.351e-04
GO:0019693 ribose phosphate metabolic process BP 1.725e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.881e-53
GO:0015979 photosynthesis BP 1.098e-30
GO:0006091 generation of precursor metabolites and ... BP 5.098e-23
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot hypoxia pRBCS		 Log2 signal ratio
root epidermis and lateral root cap 40 mM NaCl
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.748 0.032
2 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.543 0.010
3 248102_at AT5G55140 [ribosomal protein L30 family protein] 0.507 -0.392
4 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.475 -0.497
5 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.470 -0.032
6 259432_at AT1G01520 ASG4, ALTERED SEED GERMINATION 4 0.439 -0.052
7 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.434 -0.036
8 264201_at AT1G22630 unknown 0.395 0.115
9 251985_at AT3G53220 [Thioredoxin superfamily protein] 0.388 -0.228
10 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 0.369 0.007
11 266717_at AT2G46735 unknown 0.365 -0.012
12 261629_at AT1G49980 [DNA/RNA polymerases superfamily protein] 0.360 0.097
13 261110_at AT1G75440 UBC16, ubiquitin-conjugating enzyme 16 0.356 -0.378
14 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.354 -0.094
15 253607_at AT4G30330 [Small nuclear ribonucleoprotein family protein] 0.339 -0.368
16 249441_at AT5G39730 [AIG2-like (avirulence induced gene) family protein] 0.336 -0.092
17 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.330 -0.238
18 259423_at AT1G13880 [ELM2 domain-containing protein] 0.329 0.063
19 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.325 -0.057
20 261516_at AT1G71750 HGPT, Hypoxanthine-guanine phosphoribosyltransferase 0.324 0.005
21 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.315 0.203
22 266237_at AT2G29540 ATRPAC14, ATRPC14, RNApolymerase 14 kDa subunit, RPC14, RNApolymerase 14 kDa subunit 0.313 -0.187
23 249648_at AT5G37050 unknown 0.313 0.007
24 246757_at AT5G27940 WPP3, WPP domain protein 3 0.304 -0.090
25 260776_at AT1G14580 [C2H2-like zinc finger protein] 0.303 -0.101
26 257081_at AT3G30460 [RING/U-box superfamily protein] 0.302 0.073
27 249834_at AT5G23440 FTRA1, ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 0.300 -0.039
28 247632_at AT5G60460 [Preprotein translocase Sec, Sec61-beta subunit protein] 0.296 -0.416
29 265044_at AT1G03950 VPS2.3, vacuolar protein sorting-associated protein 2.3 0.296 0.050
30 257058_at AT3G15352 ATCOX17, ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, COX17, cytochrome c oxidase 17 0.295 -0.188
31 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 0.289 -0.156
32 253917_at AT4G27380 unknown 0.288 -0.412
33 253830_at AT4G27652 unknown 0.286 -0.035
34 250881_at AT5G04080 unknown 0.286 0.029
35 252661_at AT3G44450 unknown 0.283 0.236
36 256653_at AT3G18870 [Mitochondrial transcription termination factor family protein] 0.283 -0.104
37 262049_at AT1G80180 unknown 0.281 0.212
38 248028_at AT5G55620 unknown 0.278 -0.052
39 249260_at AT5G41680 [Protein kinase superfamily protein] 0.277 -0.092
40 267636_at AT2G42110 unknown 0.273 -0.466
41 266566_at AT2G24040 [Low temperature and salt responsive protein family] 0.273 -0.224
42 265183_at AT1G23750 [Nucleic acid-binding, OB-fold-like protein] 0.272 -0.264
43 253305_at AT4G33666 unknown 0.271 0.317
44 263597_at AT2G01870 unknown 0.269 -0.065
45 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.269 -0.101
46 249878_at AT5G23090 NF-YB13, nuclear factor Y, subunit B13 0.266 0.012
47 258595_at AT3G04500 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.265 -0.202
48 246462_at AT5G16940 [carbon-sulfur lyases] 0.265 -0.188
49 245747_at AT1G51100 CRR41, CHLORORESPIRATORY REDUCTION 41 0.264 -0.211
50 247793_at AT5G58650 PSY1, plant peptide containing sulfated tyrosine 1 0.264 -0.300
51 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.260 -0.002
52 249109_at AT5G43700 ATAUX2-11, AUXIN INDUCIBLE 2-11, IAA4, indole-3-acetic acid inducible 4 0.260 -0.095
53 248261_at AT5G53280 PDV1, PLASTID DIVISION1 0.259 -0.179
54 254624_at AT4G18580 unknown 0.254 -0.108
55 261247_at AT1G20070 unknown 0.253 0.401
56 258002_at AT3G28930 AIG2, AVRRPT2-INDUCED GENE 2 0.250 -0.267
57 249191_at AT5G42760 [Leucine carboxyl methyltransferase] 0.249 -0.111
58 254611_at AT4G19095 unknown 0.249 0.119
59 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B 0.243 -0.091
60 246936_at AT5G25360 unknown 0.242 -0.233
61 264692_at AT1G70000 [myb-like transcription factor family protein] 0.241 -0.050
62 252041_at AT3G52090 ATRPB13.6, NRPB11, NRPD11, NRPE11 0.239 -0.156
63 252565_at AT3G46000 ADF2, actin depolymerizing factor 2 0.237 -0.003
64 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.236 -0.075
65 251036_at AT5G02160 unknown 0.235 0.163
66 265025_at AT1G24575 unknown 0.232 -0.051
67 257262_at AT3G21890 BBX31, B-box domain protein 31 0.232 0.078
68 262367_at AT1G73030 CHMP1A, CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1A, VPS46.2 0.231 -0.067
69 252935_at AT4G39150 [DNAJ heat shock N-terminal domain-containing protein] 0.229 -0.098
70 262389_at AT1G49270 AtPERK7, proline-rich extensin-like receptor kinase 7, PERK7, proline-rich extensin-like receptor kinase 7 0.228 -0.060
71 261409_at AT1G07640 OBP2, URP3, UAS-TAGGED ROOT PATTERNING3 0.228 0.019
72 260004_at AT1G67860 unknown 0.227 0.123
73 263630_at AT2G04845 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.225 -0.181
74 246007_at AT5G08410 FTRA2, ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 0.224 0.110
75 265676_at AT2G32070 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.223 -0.098
76 246497_at AT5G16220 [Octicosapeptide/Phox/Bem1p family protein] 0.222 -0.142
77 249863_at AT5G22950 VPS24.1 0.222 0.012
78 256527_at AT1G66100 [Plant thionin] 0.220 -0.117
79 251393_at AT3G60640 ATG8G, AUTOPHAGY 8G 0.220 0.168
80 254355_at AT4G22380 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.218 -0.320
81 244981_at ATCG00770 RPS8, ribosomal protein S8 -1.002 0.445
82 266393_at AT2G41260 ATM17, M17 -0.996 -0.037
83 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.991 0.186
84 245025_at ATCG00130 ATPF -0.972 0.514
85 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 -0.962 0.316
86 244966_at ATCG00600 PETG -0.933 0.257
87 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.873 0.444
88 244973_at ATCG00690 PSBT, photosystem II reaction center protein T, PSBTC -0.867 0.141
89 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -0.865 1.028
90 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.864 0.493
91 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.858 0.756
92 244965_at ATCG00590 ORF31 -0.838 0.517
93 244936_at ATCG01100 NDHA -0.826 0.352
94 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.792 0.088
95 257130_at AT3G20210 DELTA-VPE, delta vacuolar processing enzyme, DELTAVPE, DELTA VACUOLAR PROCESSING ENZYME -0.786 -0.002
96 257334_at ATMG01370 ORF111D -0.786 0.158
97 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.782 0.772
98 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.777 0.422
99 245008_at ATCG00360 YCF3 -0.759 0.591
100 244932_at ATCG01060 PSAC -0.716 0.100
101 245017_at ATCG00510 PSAI, photsystem I subunit I -0.710 0.307
102 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.696 0.671
103 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.677 0.713
104 245002_at ATCG00270 PSBD, photosystem II reaction center protein D -0.676 -0.131
105 251838_at AT3G54940 [Papain family cysteine protease] -0.676 -0.008
106 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.675 0.345
107 244933_at ATCG01070 NDHE -0.671 0.268
108 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.643 0.267
109 261981_at AT1G33811 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.643 -0.052
110 244998_at ATCG00180 RPOC1 -0.636 0.274
111 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.634 0.517
112 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.633 -0.016
113 244934_at ATCG01080 NDHG -0.628 0.281
114 245026_at ATCG00140 ATPH -0.627 0.384
115 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.617 0.382
116 244967_at ATCG00630 PSAJ -0.617 0.286
117 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.604 0.251
118 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.600 0.088
119 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.586 0.369
120 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.586 0.048
121 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.585 0.043
122 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.579 0.520
123 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.576 0.357
124 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.573 -0.165
125 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.563 -0.063
126 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 -0.562 -0.049
127 245019_at ATCG00530 YCF10 -0.560 0.305
128 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.559 0.182
129 260166_at AT1G79840 GL2, GLABRA 2 -0.553 -0.069
130 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.551 0.498
131 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.550 0.053
132 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.549 0.130
133 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.534 0.090
134 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 -0.529 0.068
135 245004_at ATCG00300 YCF9 -0.528 0.500
136 251942_at AT3G53480 ABCG37, ATP-binding cassette G37, ATPDR9, PLEIOTROPIC DRUG RESISTANCE 9, PDR9, pleiotropic drug resistance 9, PIS1, polar auxin transport inhibitor sensitive 1 -0.522 0.080
137 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.521 0.543
138 244997_at ATCG00170 RPOC2 -0.520 0.522
139 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.518 0.106
140 253191_at AT4G35350 XCP1, xylem cysteine peptidase 1 -0.518 0.146
141 247297_at AT5G64100 [Peroxidase superfamily protein] -0.515 -0.093
142 245018_at ATCG00520 YCF4 -0.510 0.167
143 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.502 0.332
144 245015_at ATCG00490 RBCL -0.497 0.236
145 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.493 0.366
146 248728_at AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 -0.493 0.087
147 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.492 0.072
148 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.485 0.499
149 250868_at AT5G03860 MLS, malate synthase -0.484 0.320
150 267459_at AT2G33850 unknown -0.483 -0.148
151 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.482 0.129
152 257333_at ATMG01360 COX1, cytochrome oxidase -0.481 0.402
153 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.475 -0.053
154 262260_at AT1G70850 MLP34, MLP-like protein 34 -0.475 -0.232
155 245000_at ATCG00210 YCF6 -0.469 0.006
156 259578_at AT1G27990 unknown -0.468 -0.065
157 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.461 0.432
158 245006_at ATCG00340 PSAB -0.458 0.663
159 249567_at AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.458 0.358