4.0:Information of module
shoot hypoxia pGL2
In comparison with Col0-PsmES4326-24hpi help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006810 transport BP 1.649e-07
GO:0009070 serine family amino acid biosynthetic pr... BP 1.703e-07
GO:0051179 localization BP 1.778e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 1.146e-40
GO:0015979 photosynthesis BP 5.777e-39
GO:0006091 generation of precursor metabolites and ... BP 1.897e-32
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot hypoxia pGL2		 Log2 signal ratio
Col0-PsmES4326-24hpi
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.895 0.342
2 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.775 0.032
3 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.658 0.279
4 250881_at AT5G04080 unknown 0.650 0.151
5 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.648 0.004
6 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.604 0.173
7 264580_at AT1G05340 unknown 0.597 0.922
8 259332_at AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 0.597 -0.108
9 259423_at AT1G13880 [ELM2 domain-containing protein] 0.587 0.176
10 265025_at AT1G24575 unknown 0.583 0.564
11 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.549 0.225
12 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] 0.532 -0.042
13 255028_at AT4G09890 unknown 0.530 -0.421
14 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 0.528 -0.231
15 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.518 -0.003
16 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 0.472 0.083
17 246440_at AT5G17650 [glycine/proline-rich protein] 0.466 0.342
18 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 0.462 0.173
19 260887_at AT1G29160 [Dof-type zinc finger DNA-binding family protein] 0.459 0.559
20 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.457 -0.797
21 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.451 -0.449
22 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.451 0.706
23 255945_at AT5G28610 unknown 0.449 0.053
24 246108_at AT5G28630 [glycine-rich protein] 0.443 -0.141
25 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.442 -0.226
26 266479_at AT2G31160 LSH3, LIGHT SENSITIVE HYPOCOTYLS 3, OBO1, ORGAN BOUNDARY 1 0.442 -0.053
27 255243_at AT4G05590 unknown 0.434 0.298
28 255854_at AT1G67050 unknown 0.432 -0.003
29 261407_at AT1G18810 [phytochrome kinase substrate-related] 0.428 -0.287
30 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.428 -0.308
31 251454_at AT3G60080 [RING/U-box superfamily protein] 0.424 0.030
32 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.421 -0.137
33 249622_at AT5G37550 unknown 0.418 0.070
34 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 0.415 0.152
35 263297_at AT2G15310 ARFB1A, ADP-ribosylation factor B1A, ATARFB1A, ADP-ribosylation factor B1A 0.406 0.420
36 258529_at AT3G06740 GATA15, GATA transcription factor 15 0.404 -0.353
37 254361_at AT4G22212 [Arabidopsis defensin-like protein] 0.392 0.096
38 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.391 0.292
39 252765_at AT3G42800 unknown 0.390 0.046
40 254685_at AT4G13790 SAUR25, SMALL AUXIN UPREGULATED RNA 25 0.388 0.190
41 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.386 -0.579
42 258091_at AT3G14560 unknown 0.381 0.284
43 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.380 0.602
44 253243_at AT4G34560 unknown 0.377 0.201
45 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 0.374 -0.914
46 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.373 -0.735
47 261409_at AT1G07640 OBP2, URP3, UAS-TAGGED ROOT PATTERNING3 0.370 0.310
48 263782_at AT2G46380 unknown 0.366 -0.219
49 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.365 -0.032
50 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.362 0.003
51 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 0.362 0.077
52 256527_at AT1G66100 [Plant thionin] 0.362 -0.027
53 250741_at AT5G05790 [Duplicated homeodomain-like superfamily protein] 0.361 -0.313
54 265357_at AT2G16740 UBC29, ubiquitin-conjugating enzyme 29 0.360 0.178
55 248028_at AT5G55620 unknown 0.359 -0.893
56 254362_at AT4G22160 unknown 0.358 -0.044
57 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b 0.355 -0.459
58 266175_at AT2G02450 ANAC034, Arabidopsis NAC domain containing protein 34, ANAC035, NAC domain containing protein 35, AtLOV1, LOV1, LONG VEGETATIVE PHASE 1, NAC035, NAC domain containing protein 35 0.355 -0.201
59 253627_at AT4G30650 [Low temperature and salt responsive protein family] 0.354 -0.387
60 265769_at AT2G48090 unknown 0.351 0.208
61 260004_at AT1G67860 unknown 0.350 0.105
62 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.350 0.060
63 247632_at AT5G60460 [Preprotein translocase Sec, Sec61-beta subunit protein] 0.347 0.094
64 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.341 -0.350
65 248967_at AT5G45350 [proline-rich family protein] 0.338 0.090
66 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.338 -0.250
67 257058_at AT3G15352 ATCOX17, ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, COX17, cytochrome c oxidase 17 0.333 0.375
68 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.331 0.781
69 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 0.331 0.355
70 256596_at AT3G28540 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.328 0.252
71 264782_at AT1G08810 AtMYB60, myb domain protein 60, MYB60, myb domain protein 60 0.325 -0.384
72 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.324 0.217
73 252870_at AT4G39940 AKN2, APS-kinase 2, APK2, ADENOSINE-5'-PHOSPHOSULFATE (APS) KINASE 2 0.323 -0.084
74 249166_at AT5G42840 [Cysteine/Histidine-rich C1 domain family protein] 0.321 0.093
75 257517_at AT3G16330 unknown 0.320 0.808
76 249811_at AT5G23760 [Copper transport protein family] 0.315 0.023
77 254559_at AT4G19200 [proline-rich family protein] 0.313 0.065
78 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.313 0.352
79 265354_at AT2G16700 ADF5, actin depolymerizing factor 5, ATADF5 0.312 0.336
80 250223_at AT5G14070 ROXY2 0.312 0.030
81 253162_at AT4G35630 PSAT1, phosphoserine aminotransferase 1 0.311 0.409
82 259765_at AT1G64370 unknown 0.310 0.035
83 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.310 0.355
84 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 0.309 -0.660
85 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.309 -0.154
86 264899_at AT1G23130 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.308 0.034
87 265825_at AT2G35635 RUB2, RELATED TO UBIQUITIN 2, UBQ7, ubiquitin 7 0.304 0.180
88 252712_at AT3G43800 ATGSTU27, glutathione S-transferase tau 27, GSTU27, glutathione S-transferase tau 27 0.300 -0.196
89 261500_at AT1G28400 unknown 0.298 -0.314
90 248230_at AT5G53830 [VQ motif-containing protein] 0.297 0.669
91 259250_at AT3G07580 unknown 0.297 0.256
92 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.295 -0.365
93 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.293 -0.768
94 259426_at AT1G01470 LEA14, LATE EMBRYOGENESIS ABUNDANT 14, LSR3, LIGHT STRESS-REGULATED 3 0.292 0.162
95 259366_at AT1G13280 AOC4, allene oxide cyclase 4 0.291 -0.250
96 246585_at AT5G14750 ATMYB66, myb domain protein 66, MYB66, myb domain protein 66, WER, WEREWOLF, WER1, WEREWOLF 1 0.290 0.000
97 256131_at AT1G13600 AtbZIP58, basic leucine-zipper 58, bZIP58, basic leucine-zipper 58 0.290 -0.012
98 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.287 0.357
99 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.286 0.720
100 247656_at AT5G59890 ADF4, actin depolymerizing factor 4, ATADF4 0.286 0.194
101 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.283 -0.151
102 258006_at AT3G19400 [Cysteine proteinases superfamily protein] 0.282 0.127
103 257635_at AT3G26280 CYP71B4, cytochrome P450, family 71, subfamily B, polypeptide 4 0.280 -0.051
104 261375_at AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 0.280 -0.686
105 249878_at AT5G23090 NF-YB13, nuclear factor Y, subunit B13 0.278 0.303
106 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 0.277 -0.061
107 250471_at AT5G10170 ATMIPS3, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, MIPS3, myo-inositol-1-phosphate synthase 3 0.277 -0.309
108 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.276 -0.112
109 260532_at AT2G47330 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.274 0.080
110 244981_at ATCG00770 RPS8, ribosomal protein S8 -0.988 -0.131
111 244966_at ATCG00600 PETG -0.938 -0.295
112 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.820 -0.731
113 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.813 0.567
114 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.807 -0.208
115 245025_at ATCG00130 ATPF -0.781 -0.200
116 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.767 -0.144
117 245008_at ATCG00360 YCF3 -0.765 -0.311
118 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.745 -0.283
119 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.742 -0.242
120 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.734 1.114
121 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.693 0.213
122 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.664 0.002
123 244932_at ATCG01060 PSAC -0.664 -0.275
124 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.657 -0.440
125 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.653 0.086
126 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.651 -0.231
127 245002_at ATCG00270 PSBD, photosystem II reaction center protein D -0.647 -0.212
128 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.646 -0.173
129 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.640 0.686
130 257130_at AT3G20210 DELTA-VPE, delta vacuolar processing enzyme, DELTAVPE, DELTA VACUOLAR PROCESSING ENZYME -0.634 0.090
131 244965_at ATCG00590 ORF31 -0.620 0.020
132 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.618 0.481
133 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] -0.614 1.024
134 250868_at AT5G03860 MLS, malate synthase -0.597 -0.004
135 244995_at ATCG00150 ATPI -0.595 -0.373
136 247297_at AT5G64100 [Peroxidase superfamily protein] -0.591 0.179
137 244933_at ATCG01070 NDHE -0.584 -0.149
138 254543_at AT4G19810 ChiC, class V chitinase -0.582 0.742
139 244936_at ATCG01100 NDHA -0.580 -0.087
140 245017_at ATCG00510 PSAI, photsystem I subunit I -0.576 -0.138
141 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.569 0.125
142 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR -0.568 0.969
143 266654_at AT2G25890 [Oleosin family protein] -0.567 -0.052
144 244934_at ATCG01080 NDHG -0.567 -0.281
145 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.555 -0.087
146 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.554 0.060
147 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 -0.549 0.138
148 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.547 -0.122
149 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.537 0.032
150 245018_at ATCG00520 YCF4 -0.537 -0.159
151 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.536 0.029
152 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.524 -0.014
153 244967_at ATCG00630 PSAJ -0.523 0.052
154 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.522 -0.265
155 244998_at ATCG00180 RPOC1 -0.522 -0.239
156 244997_at ATCG00170 RPOC2 -0.518 -0.319
157 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.517 0.035
158 245019_at ATCG00530 YCF10 -0.515 -0.015
159 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] -0.513 0.244
160 246273_at AT4G36700 [RmlC-like cupins superfamily protein] -0.513 1.032
161 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.511 -0.162
162 245022_at ATCG00560 PSBL, photosystem II reaction center protein L -0.505 0.013
163 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.495 -0.278
164 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.491 -0.341
165 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.489 -0.172
166 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B -0.485 0.156
167 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.480 0.153
168 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.473 0.132
169 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.471 -0.325
170 245015_at ATCG00490 RBCL -0.460 -0.318
171 253035_at AT4G38240 CGL, COMPLEX GLYCAN LESS, CGL1, COMPLEX GLYCAN LESS 1, GNTI, N-ACETYLGLUCOSAMINYLTRANSFERASE I -0.459 0.111
172 245000_at ATCG00210 YCF6 -0.459 -0.022
173 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.459 0.072
174 257333_at ATMG01360 COX1, cytochrome oxidase -0.458 0.028
175 245026_at ATCG00140 ATPH -0.451 -0.336
176 251838_at AT3G54940 [Papain family cysteine protease] -0.448 0.051
177 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.445 0.014
178 266143_at AT2G38905 [Low temperature and salt responsive protein family] -0.443 0.004
179 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.437 -0.168
180 249304_at AT5G41480 ATDFA, A. THALIANA DHFS-FPGS HOMOLOG A, DFA, DHFS-FPGS HOMOLOG A, EMB9, EMBRYO DEFECTIVE 9, GLA1, GLOBULAR ARREST1 -0.437 -0.048
181 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.437 0.577
182 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.437 0.114
183 264166_at AT1G65370 [TRAF-like family protein] -0.434 -0.294
184 258957_at AT3G01420 ALPHA-DOX1, alpha-dioxygenase 1, DIOX1, DOX1, PADOX-1, plant alpha dioxygenase 1 -0.432 1.313
185 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.431 -0.213
186 245004_at ATCG00300 YCF9 -0.430 0.012
187 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.430 0.241
188 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.424 -0.195
189 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta -0.416 -0.046
190 247672_at AT5G60220 TET4, tetraspanin4 -0.415 0.067
191 256815_at AT3G21380 [Mannose-binding lectin superfamily protein] -0.412 0.054
192 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.409 0.167
193 251942_at AT3G53480 ABCG37, ATP-binding cassette G37, ATPDR9, PLEIOTROPIC DRUG RESISTANCE 9, PDR9, pleiotropic drug resistance 9, PIS1, polar auxin transport inhibitor sensitive 1 -0.409 0.169
194 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.405 0.026
195 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.400 -0.045
196 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.396 0.710
197 257947_at AT3G21720 ICL, isocitrate lyase -0.394 0.015
198 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.391 -0.192
199 261782_at AT1G76110 [HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain] -0.384 -0.685
200 257322_at ATMG01180 ORF111B -0.384 0.037
201 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] -0.382 0.343
202 244935_at ATCG01090 NDHI -0.375 -0.019
203 244976_at ATCG00720 PETB, photosynthetic electron transfer B -0.360 -0.037
204 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.353 -0.238
205 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.351 0.107
206 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.351 -0.272
207 244906_at ATMG00690 ORF240A -0.350 0.037
208 266690_at AT2G19900 ATNADP-ME1, Arabidopsis thaliana NADP-malic enzyme 1, NADP-ME1, NADP-malic enzyme 1 -0.348 0.212
209 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.347 0.244
210 252208_at AT3G50380 [INVOLVED IN: protein localization] -0.346 0.162
211 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.343 0.205
212 244961_at ATCG01040 YCF5 -0.342 -0.072
213 244962_at ATCG01050 NDHD -0.342 -0.176
214 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 -0.334 0.060
215 245047_at ATCG00020 PSBA, photosystem II reaction center protein A -0.333 -0.015
216 255310_at AT4G04955 ALN, allantoinase, ATALN, allantoinase -0.332 -0.173
217 263726_at AT2G13610 ABCG5, ATP-binding cassette G5 -0.332 -0.098