4.0:Information of module
shoot hypoxia pGL2
In comparison with 6xX2x interploidy cross help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006810 transport BP 1.649e-07
GO:0009070 serine family amino acid biosynthetic pr... BP 1.703e-07
GO:0051179 localization BP 1.778e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 1.146e-40
GO:0015979 photosynthesis BP 5.777e-39
GO:0006091 generation of precursor metabolites and ... BP 1.897e-32
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot hypoxia pGL2		 Log2 signal ratio
6xX2x interploidy cross
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.895 0.294
2 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.775 -0.132
3 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.658 -0.132
4 250881_at AT5G04080 unknown 0.650 0.222
5 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.648 0.360
6 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.604 -0.188
7 264580_at AT1G05340 unknown 0.597 0.396
8 259332_at AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 0.597 -0.048
9 259423_at AT1G13880 [ELM2 domain-containing protein] 0.587 0.082
10 265025_at AT1G24575 unknown 0.583 0.485
11 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.549 0.103
12 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] 0.532 0.237
13 255028_at AT4G09890 unknown 0.530 0.149
14 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 0.528 0.142
15 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.518 0.169
16 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 0.472 0.278
17 246440_at AT5G17650 [glycine/proline-rich protein] 0.466 0.148
18 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 0.462 0.281
19 260887_at AT1G29160 [Dof-type zinc finger DNA-binding family protein] 0.459 -0.013
20 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.457 0.037
21 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.451 -0.067
22 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.451 -0.308
23 255945_at AT5G28610 unknown 0.449 0.022
24 246108_at AT5G28630 [glycine-rich protein] 0.443 0.070
25 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.442 0.142
26 266479_at AT2G31160 LSH3, LIGHT SENSITIVE HYPOCOTYLS 3, OBO1, ORGAN BOUNDARY 1 0.442 0.051
27 255243_at AT4G05590 unknown 0.434 0.140
28 255854_at AT1G67050 unknown 0.432 -0.124
29 261407_at AT1G18810 [phytochrome kinase substrate-related] 0.428 -0.052
30 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.428 0.260
31 251454_at AT3G60080 [RING/U-box superfamily protein] 0.424 0.023
32 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.421 -0.086
33 249622_at AT5G37550 unknown 0.418 0.110
34 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 0.415 0.282
35 263297_at AT2G15310 ARFB1A, ADP-ribosylation factor B1A, ATARFB1A, ADP-ribosylation factor B1A 0.406 0.288
36 258529_at AT3G06740 GATA15, GATA transcription factor 15 0.404 -0.002
37 254361_at AT4G22212 [Arabidopsis defensin-like protein] 0.392 -0.030
38 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.391 0.246
39 252765_at AT3G42800 unknown 0.390 0.061
40 254685_at AT4G13790 SAUR25, SMALL AUXIN UPREGULATED RNA 25 0.388 0.012
41 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.386 0.492
42 258091_at AT3G14560 unknown 0.381 0.209
43 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.380 -0.134
44 253243_at AT4G34560 unknown 0.377 0.144
45 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 0.374 0.136
46 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.373 -0.051
47 261409_at AT1G07640 OBP2, URP3, UAS-TAGGED ROOT PATTERNING3 0.370 0.308
48 263782_at AT2G46380 unknown 0.366 0.098
49 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.365 0.198
50 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.362 0.191
51 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 0.362 0.440
52 256527_at AT1G66100 [Plant thionin] 0.362 -0.007
53 250741_at AT5G05790 [Duplicated homeodomain-like superfamily protein] 0.361 0.148
54 265357_at AT2G16740 UBC29, ubiquitin-conjugating enzyme 29 0.360 0.189
55 248028_at AT5G55620 unknown 0.359 0.404
56 254362_at AT4G22160 unknown 0.358 0.161
57 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b 0.355 -0.033
58 266175_at AT2G02450 ANAC034, Arabidopsis NAC domain containing protein 34, ANAC035, NAC domain containing protein 35, AtLOV1, LOV1, LONG VEGETATIVE PHASE 1, NAC035, NAC domain containing protein 35 0.355 0.160
59 253627_at AT4G30650 [Low temperature and salt responsive protein family] 0.354 -0.080
60 265769_at AT2G48090 unknown 0.351 0.188
61 260004_at AT1G67860 unknown 0.350 0.122
62 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.350 0.056
63 247632_at AT5G60460 [Preprotein translocase Sec, Sec61-beta subunit protein] 0.347 0.109
64 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.341 0.062
65 248967_at AT5G45350 [proline-rich family protein] 0.338 0.047
66 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.338 0.164
67 257058_at AT3G15352 ATCOX17, ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, COX17, cytochrome c oxidase 17 0.333 -0.031
68 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.331 0.069
69 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 0.331 0.029
70 256596_at AT3G28540 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.328 0.209
71 264782_at AT1G08810 AtMYB60, myb domain protein 60, MYB60, myb domain protein 60 0.325 0.047
72 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.324 0.217
73 252870_at AT4G39940 AKN2, APS-kinase 2, APK2, ADENOSINE-5'-PHOSPHOSULFATE (APS) KINASE 2 0.323 -0.242
74 249166_at AT5G42840 [Cysteine/Histidine-rich C1 domain family protein] 0.321 0.048
75 257517_at AT3G16330 unknown 0.320 -0.026
76 249811_at AT5G23760 [Copper transport protein family] 0.315 0.038
77 254559_at AT4G19200 [proline-rich family protein] 0.313 -0.032
78 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.313 0.330
79 265354_at AT2G16700 ADF5, actin depolymerizing factor 5, ATADF5 0.312 -0.158
80 250223_at AT5G14070 ROXY2 0.312 -0.085
81 253162_at AT4G35630 PSAT1, phosphoserine aminotransferase 1 0.311 -0.042
82 259765_at AT1G64370 unknown 0.310 0.185
83 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.310 -0.317
84 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 0.309 0.255
85 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.309 -0.077
86 264899_at AT1G23130 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.308 0.310
87 265825_at AT2G35635 RUB2, RELATED TO UBIQUITIN 2, UBQ7, ubiquitin 7 0.304 0.110
88 252712_at AT3G43800 ATGSTU27, glutathione S-transferase tau 27, GSTU27, glutathione S-transferase tau 27 0.300 0.023
89 261500_at AT1G28400 unknown 0.298 0.198
90 248230_at AT5G53830 [VQ motif-containing protein] 0.297 0.319
91 259250_at AT3G07580 unknown 0.297 0.051
92 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.295 -0.052
93 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.293 -0.131
94 259426_at AT1G01470 LEA14, LATE EMBRYOGENESIS ABUNDANT 14, LSR3, LIGHT STRESS-REGULATED 3 0.292 -0.021
95 259366_at AT1G13280 AOC4, allene oxide cyclase 4 0.291 0.229
96 246585_at AT5G14750 ATMYB66, myb domain protein 66, MYB66, myb domain protein 66, WER, WEREWOLF, WER1, WEREWOLF 1 0.290 -0.017
97 256131_at AT1G13600 AtbZIP58, basic leucine-zipper 58, bZIP58, basic leucine-zipper 58 0.290 -0.062
98 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.287 0.268
99 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.286 0.638
100 247656_at AT5G59890 ADF4, actin depolymerizing factor 4, ATADF4 0.286 0.032
101 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.283 0.084
102 258006_at AT3G19400 [Cysteine proteinases superfamily protein] 0.282 0.170
103 257635_at AT3G26280 CYP71B4, cytochrome P450, family 71, subfamily B, polypeptide 4 0.280 0.482
104 261375_at AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 0.280 0.252
105 249878_at AT5G23090 NF-YB13, nuclear factor Y, subunit B13 0.278 0.126
106 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 0.277 0.235
107 250471_at AT5G10170 ATMIPS3, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, MIPS3, myo-inositol-1-phosphate synthase 3 0.277 -0.021
108 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.276 -0.122
109 260532_at AT2G47330 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.274 0.038
110 244981_at ATCG00770 RPS8, ribosomal protein S8 -0.988 -0.520
111 244966_at ATCG00600 PETG -0.938 -0.504
112 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.820 -0.274
113 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.813 -0.007
114 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.807 -0.512
115 245025_at ATCG00130 ATPF -0.781 -0.554
116 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.767 -0.222
117 245008_at ATCG00360 YCF3 -0.765 -0.491
118 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.745 -0.363
119 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.742 -0.277
120 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.734 -0.236
121 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.693 -0.073
122 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.664 -0.189
123 244932_at ATCG01060 PSAC -0.664 -0.573
124 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.657 -0.292
125 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.653 -0.031
126 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.651 -0.334
127 245002_at ATCG00270 PSBD, photosystem II reaction center protein D -0.647 -0.340
128 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.646 -0.423
129 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.640 0.189
130 257130_at AT3G20210 DELTA-VPE, delta vacuolar processing enzyme, DELTAVPE, DELTA VACUOLAR PROCESSING ENZYME -0.634 -0.011
131 244965_at ATCG00590 ORF31 -0.620 -0.368
132 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.618 -0.034
133 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] -0.614 -0.182
134 250868_at AT5G03860 MLS, malate synthase -0.597 0.019
135 244995_at ATCG00150 ATPI -0.595 -0.383
136 247297_at AT5G64100 [Peroxidase superfamily protein] -0.591 0.018
137 244933_at ATCG01070 NDHE -0.584 -0.524
138 254543_at AT4G19810 ChiC, class V chitinase -0.582 0.008
139 244936_at ATCG01100 NDHA -0.580 -0.329
140 245017_at ATCG00510 PSAI, photsystem I subunit I -0.576 -0.184
141 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.569 -0.060
142 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR -0.568 0.092
143 266654_at AT2G25890 [Oleosin family protein] -0.567 -0.122
144 244934_at ATCG01080 NDHG -0.567 -0.361
145 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.555 -0.368
146 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.554 0.082
147 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 -0.549 0.133
148 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.547 -0.069
149 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.537 -0.212
150 245018_at ATCG00520 YCF4 -0.537 -0.314
151 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.536 0.043
152 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.524 -0.147
153 244967_at ATCG00630 PSAJ -0.523 -0.107
154 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.522 -0.176
155 244998_at ATCG00180 RPOC1 -0.522 -0.322
156 244997_at ATCG00170 RPOC2 -0.518 -0.455
157 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.517 -0.032
158 245019_at ATCG00530 YCF10 -0.515 -0.219
159 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] -0.513 -0.160
160 246273_at AT4G36700 [RmlC-like cupins superfamily protein] -0.513 -0.287
161 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.511 -0.340
162 245022_at ATCG00560 PSBL, photosystem II reaction center protein L -0.505 -0.195
163 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.495 0.016
164 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.491 -0.260
165 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.489 -0.321
166 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B -0.485 0.008
167 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.480 -0.066
168 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.473 0.199
169 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.471 -0.397
170 245015_at ATCG00490 RBCL -0.460 -0.307
171 253035_at AT4G38240 CGL, COMPLEX GLYCAN LESS, CGL1, COMPLEX GLYCAN LESS 1, GNTI, N-ACETYLGLUCOSAMINYLTRANSFERASE I -0.459 -0.066
172 245000_at ATCG00210 YCF6 -0.459 -0.249
173 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.459 0.104
174 257333_at ATMG01360 COX1, cytochrome oxidase -0.458 -0.349
175 245026_at ATCG00140 ATPH -0.451 -0.303
176 251838_at AT3G54940 [Papain family cysteine protease] -0.448 0.037
177 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.445 0.046
178 266143_at AT2G38905 [Low temperature and salt responsive protein family] -0.443 0.197
179 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.437 -0.108
180 249304_at AT5G41480 ATDFA, A. THALIANA DHFS-FPGS HOMOLOG A, DFA, DHFS-FPGS HOMOLOG A, EMB9, EMBRYO DEFECTIVE 9, GLA1, GLOBULAR ARREST1 -0.437 0.093
181 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.437 -0.366
182 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.437 -0.002
183 264166_at AT1G65370 [TRAF-like family protein] -0.434 0.466
184 258957_at AT3G01420 ALPHA-DOX1, alpha-dioxygenase 1, DIOX1, DOX1, PADOX-1, plant alpha dioxygenase 1 -0.432 -0.012
185 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.431 -0.126
186 245004_at ATCG00300 YCF9 -0.430 -0.202
187 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.430 0.753
188 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.424 -0.215
189 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta -0.416 -0.093
190 247672_at AT5G60220 TET4, tetraspanin4 -0.415 -0.053
191 256815_at AT3G21380 [Mannose-binding lectin superfamily protein] -0.412 -0.021
192 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.409 0.094
193 251942_at AT3G53480 ABCG37, ATP-binding cassette G37, ATPDR9, PLEIOTROPIC DRUG RESISTANCE 9, PDR9, pleiotropic drug resistance 9, PIS1, polar auxin transport inhibitor sensitive 1 -0.409 0.079
194 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.405 -0.178
195 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.400 0.021
196 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.396 -0.121
197 257947_at AT3G21720 ICL, isocitrate lyase -0.394 -0.141
198 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.391 0.405
199 261782_at AT1G76110 [HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain] -0.384 -0.223
200 257322_at ATMG01180 ORF111B -0.384 0.162
201 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] -0.382 -0.082
202 244935_at ATCG01090 NDHI -0.375 -0.126
203 244976_at ATCG00720 PETB, photosynthetic electron transfer B -0.360 -0.157
204 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.353 0.142
205 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.351 0.586
206 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.351 -0.178
207 244906_at ATMG00690 ORF240A -0.350 -0.047
208 266690_at AT2G19900 ATNADP-ME1, Arabidopsis thaliana NADP-malic enzyme 1, NADP-ME1, NADP-malic enzyme 1 -0.348 -0.067
209 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.347 0.294
210 252208_at AT3G50380 [INVOLVED IN: protein localization] -0.346 0.053
211 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.343 0.152
212 244961_at ATCG01040 YCF5 -0.342 -0.112
213 244962_at ATCG01050 NDHD -0.342 -0.325
214 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 -0.334 -0.223
215 245047_at ATCG00020 PSBA, photosystem II reaction center protein A -0.333 -0.280
216 255310_at AT4G04955 ALN, allantoinase, ATALN, allantoinase -0.332 -0.106
217 263726_at AT2G13610 ABCG5, ATP-binding cassette G5 -0.332 0.232