4.0:Information of module
shoot hypoxia pGL2
In comparison with vtc2 mature somatic embryo help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006810 transport BP 1.649e-07
GO:0009070 serine family amino acid biosynthetic pr... BP 1.703e-07
GO:0051179 localization BP 1.778e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 1.146e-40
GO:0015979 photosynthesis BP 5.777e-39
GO:0006091 generation of precursor metabolites and ... BP 1.897e-32
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot hypoxia pGL2		 Log2 signal ratio
vtc2 mature somatic embryo
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.895 0.044
2 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.775 -0.085
3 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.658 -0.019
4 250881_at AT5G04080 unknown 0.650 0.081
5 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.648 -0.055
6 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.604 0.116
7 264580_at AT1G05340 unknown 0.597 0.158
8 259332_at AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 0.597 0.153
9 259423_at AT1G13880 [ELM2 domain-containing protein] 0.587 -0.065
10 265025_at AT1G24575 unknown 0.583 -0.116
11 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.549 -0.050
12 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] 0.532 -0.128
13 255028_at AT4G09890 unknown 0.530 0.097
14 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 0.528 0.265
15 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.518 -0.149
16 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 0.472 -0.007
17 246440_at AT5G17650 [glycine/proline-rich protein] 0.466 0.199
18 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 0.462 -0.152
19 260887_at AT1G29160 [Dof-type zinc finger DNA-binding family protein] 0.459 0.004
20 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.457 1.080
21 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.451 0.099
22 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.451 -0.020
23 255945_at AT5G28610 unknown 0.449 0.060
24 246108_at AT5G28630 [glycine-rich protein] 0.443 0.099
25 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.442 0.114
26 266479_at AT2G31160 LSH3, LIGHT SENSITIVE HYPOCOTYLS 3, OBO1, ORGAN BOUNDARY 1 0.442 0.024
27 255243_at AT4G05590 unknown 0.434 0.245
28 255854_at AT1G67050 unknown 0.432 0.135
29 261407_at AT1G18810 [phytochrome kinase substrate-related] 0.428 0.042
30 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.428 -0.087
31 251454_at AT3G60080 [RING/U-box superfamily protein] 0.424 -0.007
32 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.421 0.067
33 249622_at AT5G37550 unknown 0.418 0.031
34 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 0.415 -0.286
35 263297_at AT2G15310 ARFB1A, ADP-ribosylation factor B1A, ATARFB1A, ADP-ribosylation factor B1A 0.406 0.106
36 258529_at AT3G06740 GATA15, GATA transcription factor 15 0.404 0.040
37 254361_at AT4G22212 [Arabidopsis defensin-like protein] 0.392 0.023
38 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.391 0.007
39 252765_at AT3G42800 unknown 0.390 -0.119
40 254685_at AT4G13790 SAUR25, SMALL AUXIN UPREGULATED RNA 25 0.388 0.047
41 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.386 -0.075
42 258091_at AT3G14560 unknown 0.381 -0.111
43 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.380 0.195
44 253243_at AT4G34560 unknown 0.377 -0.024
45 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 0.374 0.062
46 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.373 -0.032
47 261409_at AT1G07640 OBP2, URP3, UAS-TAGGED ROOT PATTERNING3 0.370 -0.071
48 263782_at AT2G46380 unknown 0.366 0.021
49 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.365 0.192
50 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.362 0.093
51 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 0.362 0.019
52 256527_at AT1G66100 [Plant thionin] 0.362 0.040
53 250741_at AT5G05790 [Duplicated homeodomain-like superfamily protein] 0.361 -0.106
54 265357_at AT2G16740 UBC29, ubiquitin-conjugating enzyme 29 0.360 -0.017
55 248028_at AT5G55620 unknown 0.359 0.472
56 254362_at AT4G22160 unknown 0.358 0.131
57 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b 0.355 0.178
58 266175_at AT2G02450 ANAC034, Arabidopsis NAC domain containing protein 34, ANAC035, NAC domain containing protein 35, AtLOV1, LOV1, LONG VEGETATIVE PHASE 1, NAC035, NAC domain containing protein 35 0.355 0.010
59 253627_at AT4G30650 [Low temperature and salt responsive protein family] 0.354 0.088
60 265769_at AT2G48090 unknown 0.351 0.019
61 260004_at AT1G67860 unknown 0.350 0.245
62 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.350 -0.053
63 247632_at AT5G60460 [Preprotein translocase Sec, Sec61-beta subunit protein] 0.347 0.118
64 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.341 -0.029
65 248967_at AT5G45350 [proline-rich family protein] 0.338 0.041
66 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.338 0.278
67 257058_at AT3G15352 ATCOX17, ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, COX17, cytochrome c oxidase 17 0.333 0.100
68 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.331 0.164
69 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 0.331 -0.010
70 256596_at AT3G28540 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.328 0.065
71 264782_at AT1G08810 AtMYB60, myb domain protein 60, MYB60, myb domain protein 60 0.325 0.026
72 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.324 -0.040
73 252870_at AT4G39940 AKN2, APS-kinase 2, APK2, ADENOSINE-5'-PHOSPHOSULFATE (APS) KINASE 2 0.323 0.193
74 249166_at AT5G42840 [Cysteine/Histidine-rich C1 domain family protein] 0.321 0.094
75 257517_at AT3G16330 unknown 0.320 0.105
76 249811_at AT5G23760 [Copper transport protein family] 0.315 0.137
77 254559_at AT4G19200 [proline-rich family protein] 0.313 0.073
78 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.313 0.215
79 265354_at AT2G16700 ADF5, actin depolymerizing factor 5, ATADF5 0.312 0.112
80 250223_at AT5G14070 ROXY2 0.312 0.088
81 253162_at AT4G35630 PSAT1, phosphoserine aminotransferase 1 0.311 0.020
82 259765_at AT1G64370 unknown 0.310 0.077
83 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.310 0.216
84 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 0.309 0.426
85 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.309 0.156
86 264899_at AT1G23130 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.308 0.299
87 265825_at AT2G35635 RUB2, RELATED TO UBIQUITIN 2, UBQ7, ubiquitin 7 0.304 0.083
88 252712_at AT3G43800 ATGSTU27, glutathione S-transferase tau 27, GSTU27, glutathione S-transferase tau 27 0.300 0.027
89 261500_at AT1G28400 unknown 0.298 -0.054
90 248230_at AT5G53830 [VQ motif-containing protein] 0.297 0.025
91 259250_at AT3G07580 unknown 0.297 0.010
92 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.295 -0.030
93 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.293 0.115
94 259426_at AT1G01470 LEA14, LATE EMBRYOGENESIS ABUNDANT 14, LSR3, LIGHT STRESS-REGULATED 3 0.292 -0.004
95 259366_at AT1G13280 AOC4, allene oxide cyclase 4 0.291 0.008
96 246585_at AT5G14750 ATMYB66, myb domain protein 66, MYB66, myb domain protein 66, WER, WEREWOLF, WER1, WEREWOLF 1 0.290 0.076
97 256131_at AT1G13600 AtbZIP58, basic leucine-zipper 58, bZIP58, basic leucine-zipper 58 0.290 -0.115
98 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.287 -0.016
99 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.286 -0.018
100 247656_at AT5G59890 ADF4, actin depolymerizing factor 4, ATADF4 0.286 0.077
101 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.283 0.126
102 258006_at AT3G19400 [Cysteine proteinases superfamily protein] 0.282 -0.065
103 257635_at AT3G26280 CYP71B4, cytochrome P450, family 71, subfamily B, polypeptide 4 0.280 0.131
104 261375_at AT1G53160 FTM6, FLORAL TRANSITION AT THE MERISTEM6, SPL4, squamosa promoter binding protein-like 4 0.280 0.058
105 249878_at AT5G23090 NF-YB13, nuclear factor Y, subunit B13 0.278 0.065
106 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 0.277 0.153
107 250471_at AT5G10170 ATMIPS3, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, MIPS3, myo-inositol-1-phosphate synthase 3 0.277 -0.001
108 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.276 -0.120
109 260532_at AT2G47330 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.274 -0.050
110 244981_at ATCG00770 RPS8, ribosomal protein S8 -0.988 0.240
111 244966_at ATCG00600 PETG -0.938 0.099
112 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.820 0.268
113 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.813 0.281
114 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.807 -0.057
115 245025_at ATCG00130 ATPF -0.781 0.515
116 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.767 0.230
117 245008_at ATCG00360 YCF3 -0.765 0.127
118 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.745 0.176
119 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.742 0.320
120 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.734 0.355
121 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.693 0.181
122 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.664 0.004
123 244932_at ATCG01060 PSAC -0.664 0.492
124 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.657 0.116
125 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.653 0.105
126 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.651 0.211
127 245002_at ATCG00270 PSBD, photosystem II reaction center protein D -0.647 0.155
128 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.646 0.120
129 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.640 0.103
130 257130_at AT3G20210 DELTA-VPE, delta vacuolar processing enzyme, DELTAVPE, DELTA VACUOLAR PROCESSING ENZYME -0.634 -0.069
131 244965_at ATCG00590 ORF31 -0.620 0.397
132 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.618 0.291
133 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] -0.614 0.367
134 250868_at AT5G03860 MLS, malate synthase -0.597 0.029
135 244995_at ATCG00150 ATPI -0.595 -0.108
136 247297_at AT5G64100 [Peroxidase superfamily protein] -0.591 0.167
137 244933_at ATCG01070 NDHE -0.584 0.466
138 254543_at AT4G19810 ChiC, class V chitinase -0.582 0.218
139 244936_at ATCG01100 NDHA -0.580 0.083
140 245017_at ATCG00510 PSAI, photsystem I subunit I -0.576 0.255
141 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.569 0.322
142 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR -0.568 0.188
143 266654_at AT2G25890 [Oleosin family protein] -0.567 0.322
144 244934_at ATCG01080 NDHG -0.567 0.094
145 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.555 0.192
146 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.554 0.342
147 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 -0.549 0.494
148 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.547 0.064
149 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.537 -0.017
150 245018_at ATCG00520 YCF4 -0.537 0.159
151 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.536 0.437
152 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.524 -0.271
153 244967_at ATCG00630 PSAJ -0.523 0.248
154 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.522 -0.022
155 244998_at ATCG00180 RPOC1 -0.522 0.177
156 244997_at ATCG00170 RPOC2 -0.518 0.051
157 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.517 0.123
158 245019_at ATCG00530 YCF10 -0.515 0.185
159 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] -0.513 0.322
160 246273_at AT4G36700 [RmlC-like cupins superfamily protein] -0.513 0.520
161 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.511 0.278
162 245022_at ATCG00560 PSBL, photosystem II reaction center protein L -0.505 0.118
163 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.495 -0.014
164 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.491 0.192
165 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.489 0.045
166 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B -0.485 0.030
167 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.480 0.195
168 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.473 0.148
169 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.471 0.240
170 245015_at ATCG00490 RBCL -0.460 0.176
171 253035_at AT4G38240 CGL, COMPLEX GLYCAN LESS, CGL1, COMPLEX GLYCAN LESS 1, GNTI, N-ACETYLGLUCOSAMINYLTRANSFERASE I -0.459 -0.080
172 245000_at ATCG00210 YCF6 -0.459 0.226
173 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.459 0.440
174 257333_at ATMG01360 COX1, cytochrome oxidase -0.458 0.119
175 245026_at ATCG00140 ATPH -0.451 0.370
176 251838_at AT3G54940 [Papain family cysteine protease] -0.448 0.441
177 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.445 0.374
178 266143_at AT2G38905 [Low temperature and salt responsive protein family] -0.443 0.484
179 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.437 0.225
180 249304_at AT5G41480 ATDFA, A. THALIANA DHFS-FPGS HOMOLOG A, DFA, DHFS-FPGS HOMOLOG A, EMB9, EMBRYO DEFECTIVE 9, GLA1, GLOBULAR ARREST1 -0.437 -0.083
181 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.437 0.263
182 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.437 0.414
183 264166_at AT1G65370 [TRAF-like family protein] -0.434 -0.114
184 258957_at AT3G01420 ALPHA-DOX1, alpha-dioxygenase 1, DIOX1, DOX1, PADOX-1, plant alpha dioxygenase 1 -0.432 0.021
185 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.431 0.238
186 245004_at ATCG00300 YCF9 -0.430 0.258
187 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.430 0.220
188 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.424 0.203
189 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta -0.416 0.209
190 247672_at AT5G60220 TET4, tetraspanin4 -0.415 0.019
191 256815_at AT3G21380 [Mannose-binding lectin superfamily protein] -0.412 -0.045
192 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.409 0.184
193 251942_at AT3G53480 ABCG37, ATP-binding cassette G37, ATPDR9, PLEIOTROPIC DRUG RESISTANCE 9, PDR9, pleiotropic drug resistance 9, PIS1, polar auxin transport inhibitor sensitive 1 -0.409 -0.036
194 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.405 0.203
195 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.400 -0.118
196 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.396 0.360
197 257947_at AT3G21720 ICL, isocitrate lyase -0.394 0.155
198 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.391 -0.154
199 261782_at AT1G76110 [HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain] -0.384 0.023
200 257322_at ATMG01180 ORF111B -0.384 0.023
201 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] -0.382 0.335
202 244935_at ATCG01090 NDHI -0.375 0.162
203 244976_at ATCG00720 PETB, photosynthetic electron transfer B -0.360 0.102
204 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.353 -0.153
205 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.351 -0.016
206 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.351 0.148
207 244906_at ATMG00690 ORF240A -0.350 0.121
208 266690_at AT2G19900 ATNADP-ME1, Arabidopsis thaliana NADP-malic enzyme 1, NADP-ME1, NADP-malic enzyme 1 -0.348 0.274
209 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.347 -0.083
210 252208_at AT3G50380 [INVOLVED IN: protein localization] -0.346 -0.084
211 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.343 0.277
212 244961_at ATCG01040 YCF5 -0.342 0.261
213 244962_at ATCG01050 NDHD -0.342 0.270
214 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 -0.334 0.233
215 245047_at ATCG00020 PSBA, photosystem II reaction center protein A -0.333 0.448
216 255310_at AT4G04955 ALN, allantoinase, ATALN, allantoinase -0.332 -0.222
217 263726_at AT2G13610 ABCG5, ATP-binding cassette G5 -0.332 0.339