4.0:Information of module
shoot hypoxia p35S
In comparison with lateral root cap-columella pBRN2 0h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0045454 cell redox homeostasis BP 2.997e-05
GO:0019725 cellular homeostasis BP 2.915e-04
GO:0042592 homeostatic process BP 9.125e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.628e-48
GO:0015979 photosynthesis BP 2.356e-25
GO:0006091 generation of precursor metabolites and ... BP 8.200e-21
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot hypoxia p35S		 Log2 signal ratio
lateral root cap-columella pBRN2 0h BL
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.712 -2.633
2 257714_at AT3G27360 H3.1, histone 3.1 0.537 -0.040
3 249253_at AT5G42060 [DEK, chromatin associated protein] 0.530 -0.359
4 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.510 -2.764
5 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.501 -2.542
6 264580_at AT1G05340 unknown 0.482 -0.579
7 265909_at AT2G25720 unknown 0.465 -0.218
8 246861_at AT5G25890 IAA28, indole-3-acetic acid inducible 28, IAR2, IAA-ALANINE RESISTANT 2 0.459 -1.743
9 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.456 0.741
10 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 0.444 1.328
11 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.431 -2.173
12 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.413 -2.649
13 260804_at AT1G78410 [VQ motif-containing protein] 0.410 -0.120
14 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.404 0.320
15 260887_at AT1G29160 [Dof-type zinc finger DNA-binding family protein] 0.402 1.188
16 264059_at AT2G31305 INH3, INHIBITOR-3 0.395 0.698
17 254909_at AT4G11210 [Disease resistance-responsive (dirigent-like protein) family protein] 0.392 -1.217
18 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b 0.365 0.320
19 257058_at AT3G15352 ATCOX17, ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, COX17, cytochrome c oxidase 17 0.361 -0.391
20 247747_at AT5G59000 [RING/FYVE/PHD zinc finger superfamily protein] 0.346 1.043
21 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.342 -0.456
22 263168_at AT1G03020 [Thioredoxin superfamily protein] 0.334 2.022
23 253830_at AT4G27652 unknown 0.332 0.131
24 256527_at AT1G66100 [Plant thionin] 0.323 0.320
25 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.322 -2.589
26 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 0.322 -1.465
27 251985_at AT3G53220 [Thioredoxin superfamily protein] 0.318 -0.551
28 265025_at AT1G24575 unknown 0.314 -1.524
29 258091_at AT3G14560 unknown 0.313 1.059
30 249878_at AT5G23090 NF-YB13, nuclear factor Y, subunit B13 0.309 0.897
31 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.309 2.823
32 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.304 -1.406
33 252457_at AT3G47180 [RING/U-box superfamily protein] 0.297 -1.469
34 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B 0.294 -0.934
35 253607_at AT4G30330 [Small nuclear ribonucleoprotein family protein] 0.291 -1.247
36 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 0.289 0.349
37 258002_at AT3G28930 AIG2, AVRRPT2-INDUCED GENE 2 0.287 -0.727
38 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.286 1.434
39 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.281 1.333
40 264895_at AT1G23100 [GroES-like family protein] 0.278 -1.126
41 266566_at AT2G24040 [Low temperature and salt responsive protein family] 0.274 1.435
42 249441_at AT5G39730 [AIG2-like (avirulence induced gene) family protein] 0.273 -0.430
43 261407_at AT1G18810 [phytochrome kinase substrate-related] 0.272 0.320
44 248028_at AT5G55620 unknown 0.271 -1.704
45 251393_at AT3G60640 ATG8G, AUTOPHAGY 8G 0.267 -0.297
46 247111_at AT5G65880 unknown 0.261 -0.228
47 261409_at AT1G07640 OBP2, URP3, UAS-TAGGED ROOT PATTERNING3 0.256 -2.861
48 257929_at AT3G16980 NRPB9A, NRPD9A, NRPE9A 0.255 0.119
49 259250_at AT3G07580 unknown 0.255 1.161
50 265354_at AT2G16700 ADF5, actin depolymerizing factor 5, ATADF5 0.253 0.468
51 259661_at AT1G55265 unknown 0.252 2.031
52 254756_at AT4G13235 EDA21, embryo sac development arrest 21 0.247 -2.293
53 247292_at AT5G64490 [ARM repeat superfamily protein] 0.246 0.320
54 254355_at AT4G22380 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.246 -1.394
55 254624_at AT4G18580 unknown 0.245 -0.179
56 266717_at AT2G46735 unknown 0.244 0.648
57 267636_at AT2G42110 unknown 0.243 -0.053
58 249834_at AT5G23440 FTRA1, ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 0.243 -0.583
59 265676_at AT2G32070 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.239 0.069
60 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.237 -1.681
61 249427_at AT5G39850 [Ribosomal protein S4] 0.236 0.006
62 265357_at AT2G16740 UBC29, ubiquitin-conjugating enzyme 29 0.235 -2.406
63 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.233 -1.105
64 252661_at AT3G44450 unknown 0.230 1.543
65 262236_at AT1G48330 unknown 0.226 1.842
66 250434_at AT5G10390 H3.1, histone 3.1 0.226 -0.285
67 265494_at AT2G15680 AtCML30, CML30, calmodulin-like 30 0.225 0.320
68 255243_at AT4G05590 unknown 0.225 1.283
69 255511_at AT4G02075 PIT1, pitchoun 1 0.224 0.505
70 255011_at AT4G10040 CYTC-2, cytochrome c-2 0.223 0.357
71 244981_at ATCG00770 RPS8, ribosomal protein S8 -1.209 1.953
72 244985_at ATCG00810 RPL22, ribosomal protein L22 -1.146 1.598
73 244980_at ATCG00760 RPL36, ribosomal protein L36 -1.004 0.561
74 245025_at ATCG00130 ATPF -0.956 2.884
75 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.931 1.421
76 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.904 3.008
77 245008_at ATCG00360 YCF3 -0.887 2.766
78 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.858 2.997
79 244966_at ATCG00600 PETG -0.853 1.807
80 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.763 2.579
81 244933_at ATCG01070 NDHE -0.763 2.002
82 244932_at ATCG01060 PSAC -0.759 1.248
83 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.758 2.333
84 245017_at ATCG00510 PSAI, photsystem I subunit I -0.745 1.933
85 245002_at ATCG00270 PSBD, photosystem II reaction center protein D -0.743 2.664
86 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.698 -0.208
87 244934_at ATCG01080 NDHG -0.689 2.265
88 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.684 2.438
89 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.665 0.734
90 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.665 1.793
91 244998_at ATCG00180 RPOC1 -0.659 3.544
92 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.659 3.163
93 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.655 2.750
94 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.649 2.524
95 245019_at ATCG00530 YCF10 -0.645 0.637
96 244995_at ATCG00150 ATPI -0.631 1.722
97 244936_at ATCG01100 NDHA -0.627 0.966
98 244997_at ATCG00170 RPOC2 -0.621 2.384
99 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.611 1.189
100 244965_at ATCG00590 ORF31 -0.608 1.463
101 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.588 2.190
102 245018_at ATCG00520 YCF4 -0.583 1.279
103 245026_at ATCG00140 ATPH -0.562 3.104
104 245004_at ATCG00300 YCF9 -0.552 2.434
105 244967_at ATCG00630 PSAJ -0.543 2.227
106 245000_at ATCG00210 YCF6 -0.538 0.320
107 245015_at ATCG00490 RBCL -0.527 2.719
108 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.522 -0.204
109 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.521 3.604
110 257333_at ATMG01360 COX1, cytochrome oxidase -0.519 4.298
111 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.519 3.721
112 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.516 2.862
113 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.513 0.046
114 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.511 3.399
115 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.506 2.377
116 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.505 -1.336
117 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.480 3.714
118 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.479 -0.171
119 250572_at AT5G08210 MIR834A, microRNA834A -0.461 0.320
120 251641_at AT3G57470 [Insulinase (Peptidase family M16) family protein] -0.451 0.167
121 245006_at ATCG00340 PSAB -0.446 1.958
122 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.446 1.576
123 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta -0.445 2.137
124 244976_at ATCG00720 PETB, photosynthetic electron transfer B -0.443 2.480
125 244903_at ATMG00660 ORF149 -0.439 4.405
126 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.435 3.021
127 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.433 2.002
128 244962_at ATCG01050 NDHD -0.430 1.562
129 244935_at ATCG01090 NDHI -0.430 1.426
130 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.414 -0.014
131 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.410 2.887
132 244906_at ATMG00690 ORF240A -0.393 2.766
133 245020_at ATCG00540 PETA, photosynthetic electron transfer A -0.389 2.452
134 245047_at ATCG00020 PSBA, photosystem II reaction center protein A -0.389 1.101
135 265902_at AT2G25590 [Plant Tudor-like protein] -0.389 1.846
136 244961_at ATCG01040 YCF5 -0.385 2.753
137 249006_at AT5G44660 unknown -0.383 1.130
138 245926_at AT5G24740 SHBY, SHRUBBY -0.381 -0.160
139 247564_at AT5G61140 [U5 small nuclear ribonucleoprotein helicase] -0.372 0.224