4.0:Information of module
shoot hypoxia p35S
In comparison with root cap pGL2(QC pSCRBRI1) 0h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0045454 cell redox homeostasis BP 2.997e-05
GO:0019725 cellular homeostasis BP 2.915e-04
GO:0042592 homeostatic process BP 9.125e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.628e-48
GO:0015979 photosynthesis BP 2.356e-25
GO:0006091 generation of precursor metabolites and ... BP 8.200e-21
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot hypoxia p35S		 Log2 signal ratio
root cap pGL2(QC pSCRBRI1) 0h BL
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.712 -4.520
2 257714_at AT3G27360 H3.1, histone 3.1 0.537 -0.780
3 249253_at AT5G42060 [DEK, chromatin associated protein] 0.530 -0.332
4 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.510 -4.467
5 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.501 -3.654
6 264580_at AT1G05340 unknown 0.482 -1.823
7 265909_at AT2G25720 unknown 0.465 -0.031
8 246861_at AT5G25890 IAA28, indole-3-acetic acid inducible 28, IAR2, IAA-ALANINE RESISTANT 2 0.459 -0.544
9 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.456 -0.273
10 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 0.444 -0.583
11 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.431 0.267
12 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.413 -4.506
13 260804_at AT1G78410 [VQ motif-containing protein] 0.410 -0.799
14 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.404 0.146
15 260887_at AT1G29160 [Dof-type zinc finger DNA-binding family protein] 0.402 -3.852
16 264059_at AT2G31305 INH3, INHIBITOR-3 0.395 0.306
17 254909_at AT4G11210 [Disease resistance-responsive (dirigent-like protein) family protein] 0.392 -2.723
18 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b 0.365 0.146
19 257058_at AT3G15352 ATCOX17, ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, COX17, cytochrome c oxidase 17 0.361 0.375
20 247747_at AT5G59000 [RING/FYVE/PHD zinc finger superfamily protein] 0.346 -3.532
21 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.342 -0.168
22 263168_at AT1G03020 [Thioredoxin superfamily protein] 0.334 0.146
23 253830_at AT4G27652 unknown 0.332 1.192
24 256527_at AT1G66100 [Plant thionin] 0.323 0.146
25 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.322 -5.659
26 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 0.322 -3.234
27 251985_at AT3G53220 [Thioredoxin superfamily protein] 0.318 0.087
28 265025_at AT1G24575 unknown 0.314 -1.474
29 258091_at AT3G14560 unknown 0.313 -4.987
30 249878_at AT5G23090 NF-YB13, nuclear factor Y, subunit B13 0.309 0.303
31 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.309 0.337
32 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.304 2.016
33 252457_at AT3G47180 [RING/U-box superfamily protein] 0.297 -4.201
34 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B 0.294 0.251
35 253607_at AT4G30330 [Small nuclear ribonucleoprotein family protein] 0.291 0.025
36 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 0.289 -0.075
37 258002_at AT3G28930 AIG2, AVRRPT2-INDUCED GENE 2 0.287 0.686
38 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.286 -1.167
39 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.281 -1.369
40 264895_at AT1G23100 [GroES-like family protein] 0.278 -0.199
41 266566_at AT2G24040 [Low temperature and salt responsive protein family] 0.274 0.652
42 249441_at AT5G39730 [AIG2-like (avirulence induced gene) family protein] 0.273 -1.879
43 261407_at AT1G18810 [phytochrome kinase substrate-related] 0.272 1.839
44 248028_at AT5G55620 unknown 0.271 0.852
45 251393_at AT3G60640 ATG8G, AUTOPHAGY 8G 0.267 0.635
46 247111_at AT5G65880 unknown 0.261 -0.279
47 261409_at AT1G07640 OBP2, URP3, UAS-TAGGED ROOT PATTERNING3 0.256 -3.893
48 257929_at AT3G16980 NRPB9A, NRPD9A, NRPE9A 0.255 -1.419
49 259250_at AT3G07580 unknown 0.255 0.094
50 265354_at AT2G16700 ADF5, actin depolymerizing factor 5, ATADF5 0.253 1.051
51 259661_at AT1G55265 unknown 0.252 0.413
52 254756_at AT4G13235 EDA21, embryo sac development arrest 21 0.247 -2.629
53 247292_at AT5G64490 [ARM repeat superfamily protein] 0.246 0.146
54 254355_at AT4G22380 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.246 -0.076
55 254624_at AT4G18580 unknown 0.245 0.017
56 266717_at AT2G46735 unknown 0.244 -0.165
57 267636_at AT2G42110 unknown 0.243 0.752
58 249834_at AT5G23440 FTRA1, ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 0.243 -0.146
59 265676_at AT2G32070 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.239 -0.319
60 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.237 -0.816
61 249427_at AT5G39850 [Ribosomal protein S4] 0.236 -0.829
62 265357_at AT2G16740 UBC29, ubiquitin-conjugating enzyme 29 0.235 -4.113
63 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.233 -2.722
64 252661_at AT3G44450 unknown 0.230 -1.093
65 262236_at AT1G48330 unknown 0.226 -3.844
66 250434_at AT5G10390 H3.1, histone 3.1 0.226 -0.174
67 265494_at AT2G15680 AtCML30, CML30, calmodulin-like 30 0.225 0.146
68 255243_at AT4G05590 unknown 0.225 -0.073
69 255511_at AT4G02075 PIT1, pitchoun 1 0.224 1.195
70 255011_at AT4G10040 CYTC-2, cytochrome c-2 0.223 -1.725
71 244981_at ATCG00770 RPS8, ribosomal protein S8 -1.209 2.078
72 244985_at ATCG00810 RPL22, ribosomal protein L22 -1.146 1.559
73 244980_at ATCG00760 RPL36, ribosomal protein L36 -1.004 0.953
74 245025_at ATCG00130 ATPF -0.956 1.583
75 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.931 1.493
76 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.904 1.123
77 245008_at ATCG00360 YCF3 -0.887 0.597
78 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.858 0.498
79 244966_at ATCG00600 PETG -0.853 0.146
80 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.763 1.338
81 244933_at ATCG01070 NDHE -0.763 0.541
82 244932_at ATCG01060 PSAC -0.759 0.146
83 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.758 1.136
84 245017_at ATCG00510 PSAI, photsystem I subunit I -0.745 2.040
85 245002_at ATCG00270 PSBD, photosystem II reaction center protein D -0.743 0.680
86 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.698 -0.786
87 244934_at ATCG01080 NDHG -0.689 0.512
88 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.684 1.210
89 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.665 0.992
90 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.665 0.945
91 244998_at ATCG00180 RPOC1 -0.659 2.482
92 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.659 1.541
93 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.655 1.686
94 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.649 0.743
95 245019_at ATCG00530 YCF10 -0.645 0.259
96 244995_at ATCG00150 ATPI -0.631 1.039
97 244936_at ATCG01100 NDHA -0.627 0.640
98 244997_at ATCG00170 RPOC2 -0.621 1.519
99 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.611 0.480
100 244965_at ATCG00590 ORF31 -0.608 0.461
101 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.588 0.692
102 245018_at ATCG00520 YCF4 -0.583 0.152
103 245026_at ATCG00140 ATPH -0.562 1.486
104 245004_at ATCG00300 YCF9 -0.552 1.413
105 244967_at ATCG00630 PSAJ -0.543 -0.148
106 245000_at ATCG00210 YCF6 -0.538 0.146
107 245015_at ATCG00490 RBCL -0.527 1.321
108 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.522 -0.381
109 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.521 1.387
110 257333_at ATMG01360 COX1, cytochrome oxidase -0.519 2.526
111 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.519 1.374
112 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.516 1.501
113 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.513 1.112
114 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.511 0.721
115 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.506 0.146
116 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.505 2.501
117 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.480 1.500
118 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.479 -1.421
119 250572_at AT5G08210 MIR834A, microRNA834A -0.461 0.146
120 251641_at AT3G57470 [Insulinase (Peptidase family M16) family protein] -0.451 0.776
121 245006_at ATCG00340 PSAB -0.446 0.715
122 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.446 1.318
123 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta -0.445 0.531
124 244976_at ATCG00720 PETB, photosynthetic electron transfer B -0.443 0.633
125 244903_at ATMG00660 ORF149 -0.439 1.984
126 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.435 0.146
127 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.433 0.152
128 244962_at ATCG01050 NDHD -0.430 0.800
129 244935_at ATCG01090 NDHI -0.430 0.411
130 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.414 0.529
131 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.410 0.966
132 244906_at ATMG00690 ORF240A -0.393 1.187
133 245020_at ATCG00540 PETA, photosynthetic electron transfer A -0.389 1.295
134 245047_at ATCG00020 PSBA, photosystem II reaction center protein A -0.389 2.381
135 265902_at AT2G25590 [Plant Tudor-like protein] -0.389 1.723
136 244961_at ATCG01040 YCF5 -0.385 0.860
137 249006_at AT5G44660 unknown -0.383 0.050
138 245926_at AT5G24740 SHBY, SHRUBBY -0.381 0.324
139 247564_at AT5G61140 [U5 small nuclear ribonucleoprotein helicase] -0.372 0.722