4.0:Information of module
shoot hypoxia p35S
In comparison with root epidermis and lateral root cap 40 mM NaCl help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0045454 cell redox homeostasis BP 2.997e-05
GO:0019725 cellular homeostasis BP 2.915e-04
GO:0042592 homeostatic process BP 9.125e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.628e-48
GO:0015979 photosynthesis BP 2.356e-25
GO:0006091 generation of precursor metabolites and ... BP 8.200e-21
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot hypoxia p35S		 Log2 signal ratio
root epidermis and lateral root cap 40 mM NaCl
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.712 0.032
2 257714_at AT3G27360 H3.1, histone 3.1 0.537 -0.169
3 249253_at AT5G42060 [DEK, chromatin associated protein] 0.530 -0.079
4 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.510 -0.036
5 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.501 -0.032
6 264580_at AT1G05340 unknown 0.482 0.892
7 265909_at AT2G25720 unknown 0.465 -0.073
8 246861_at AT5G25890 IAA28, indole-3-acetic acid inducible 28, IAR2, IAA-ALANINE RESISTANT 2 0.459 -0.275
9 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.456 -0.497
10 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 0.444 -0.122
11 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.431 0.547
12 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.413 -0.027
13 260804_at AT1G78410 [VQ motif-containing protein] 0.410 0.182
14 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.404 -0.094
15 260887_at AT1G29160 [Dof-type zinc finger DNA-binding family protein] 0.402 0.123
16 264059_at AT2G31305 INH3, INHIBITOR-3 0.395 -0.265
17 254909_at AT4G11210 [Disease resistance-responsive (dirigent-like protein) family protein] 0.392 -0.122
18 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b 0.365 -0.006
19 257058_at AT3G15352 ATCOX17, ARABIDOPSIS THALIANA CYTOCHROME C OXIDASE 17, COX17, cytochrome c oxidase 17 0.361 -0.188
20 247747_at AT5G59000 [RING/FYVE/PHD zinc finger superfamily protein] 0.346 0.069
21 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.342 -0.238
22 263168_at AT1G03020 [Thioredoxin superfamily protein] 0.334 0.045
23 253830_at AT4G27652 unknown 0.332 -0.035
24 256527_at AT1G66100 [Plant thionin] 0.323 -0.117
25 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.322 0.160
26 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 0.322 0.454
27 251985_at AT3G53220 [Thioredoxin superfamily protein] 0.318 -0.228
28 265025_at AT1G24575 unknown 0.314 -0.051
29 258091_at AT3G14560 unknown 0.313 0.352
30 249878_at AT5G23090 NF-YB13, nuclear factor Y, subunit B13 0.309 0.012
31 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.309 0.010
32 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.304 -0.019
33 252457_at AT3G47180 [RING/U-box superfamily protein] 0.297 0.045
34 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B 0.294 -0.091
35 253607_at AT4G30330 [Small nuclear ribonucleoprotein family protein] 0.291 -0.368
36 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 0.289 0.667
37 258002_at AT3G28930 AIG2, AVRRPT2-INDUCED GENE 2 0.287 -0.267
38 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.286 -0.075
39 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.281 0.567
40 264895_at AT1G23100 [GroES-like family protein] 0.278 -0.241
41 266566_at AT2G24040 [Low temperature and salt responsive protein family] 0.274 -0.224
42 249441_at AT5G39730 [AIG2-like (avirulence induced gene) family protein] 0.273 -0.092
43 261407_at AT1G18810 [phytochrome kinase substrate-related] 0.272 0.110
44 248028_at AT5G55620 unknown 0.271 -0.052
45 251393_at AT3G60640 ATG8G, AUTOPHAGY 8G 0.267 0.168
46 247111_at AT5G65880 unknown 0.261 -0.160
47 261409_at AT1G07640 OBP2, URP3, UAS-TAGGED ROOT PATTERNING3 0.256 0.019
48 257929_at AT3G16980 NRPB9A, NRPD9A, NRPE9A 0.255 0.013
49 259250_at AT3G07580 unknown 0.255 -0.166
50 265354_at AT2G16700 ADF5, actin depolymerizing factor 5, ATADF5 0.253 0.383
51 259661_at AT1G55265 unknown 0.252 0.110
52 254756_at AT4G13235 EDA21, embryo sac development arrest 21 0.247 0.120
53 247292_at AT5G64490 [ARM repeat superfamily protein] 0.246 0.052
54 254355_at AT4G22380 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.246 -0.320
55 254624_at AT4G18580 unknown 0.245 -0.108
56 266717_at AT2G46735 unknown 0.244 -0.012
57 267636_at AT2G42110 unknown 0.243 -0.466
58 249834_at AT5G23440 FTRA1, ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 0.243 -0.039
59 265676_at AT2G32070 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.239 -0.098
60 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.237 -0.002
61 249427_at AT5G39850 [Ribosomal protein S4] 0.236 -0.456
62 265357_at AT2G16740 UBC29, ubiquitin-conjugating enzyme 29 0.235 -0.063
63 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.233 0.203
64 252661_at AT3G44450 unknown 0.230 0.236
65 262236_at AT1G48330 unknown 0.226 0.030
66 250434_at AT5G10390 H3.1, histone 3.1 0.226 -0.150
67 265494_at AT2G15680 AtCML30, CML30, calmodulin-like 30 0.225 0.690
68 255243_at AT4G05590 unknown 0.225 -0.064
69 255511_at AT4G02075 PIT1, pitchoun 1 0.224 0.071
70 255011_at AT4G10040 CYTC-2, cytochrome c-2 0.223 -0.183
71 244981_at ATCG00770 RPS8, ribosomal protein S8 -1.209 0.445
72 244985_at ATCG00810 RPL22, ribosomal protein L22 -1.146 0.186
73 244980_at ATCG00760 RPL36, ribosomal protein L36 -1.004 0.493
74 245025_at ATCG00130 ATPF -0.956 0.514
75 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.931 0.444
76 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.904 0.756
77 245008_at ATCG00360 YCF3 -0.887 0.591
78 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.858 0.422
79 244966_at ATCG00600 PETG -0.853 0.257
80 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.763 0.772
81 244933_at ATCG01070 NDHE -0.763 0.268
82 244932_at ATCG01060 PSAC -0.759 0.100
83 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.758 0.713
84 245017_at ATCG00510 PSAI, photsystem I subunit I -0.745 0.307
85 245002_at ATCG00270 PSBD, photosystem II reaction center protein D -0.743 -0.131
86 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.698 0.267
87 244934_at ATCG01080 NDHG -0.689 0.281
88 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.684 0.182
89 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.665 0.517
90 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.665 -0.165
91 244998_at ATCG00180 RPOC1 -0.659 0.274
92 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.659 0.382
93 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.655 0.088
94 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.649 0.048
95 245019_at ATCG00530 YCF10 -0.645 0.305
96 244995_at ATCG00150 ATPI -0.631 0.271
97 244936_at ATCG01100 NDHA -0.627 0.352
98 244997_at ATCG00170 RPOC2 -0.621 0.522
99 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.611 0.520
100 244965_at ATCG00590 ORF31 -0.608 0.517
101 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.588 0.251
102 245018_at ATCG00520 YCF4 -0.583 0.167
103 245026_at ATCG00140 ATPH -0.562 0.384
104 245004_at ATCG00300 YCF9 -0.552 0.500
105 244967_at ATCG00630 PSAJ -0.543 0.286
106 245000_at ATCG00210 YCF6 -0.538 0.006
107 245015_at ATCG00490 RBCL -0.527 0.236
108 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.522 0.077
109 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.521 0.129
110 257333_at ATMG01360 COX1, cytochrome oxidase -0.519 0.402
111 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.519 0.498
112 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.516 0.332
113 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.513 0.357
114 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.511 0.543
115 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.506 0.201
116 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.505 -0.063
117 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.480 0.106
118 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.479 -0.515
119 250572_at AT5G08210 MIR834A, microRNA834A -0.461 0.210
120 251641_at AT3G57470 [Insulinase (Peptidase family M16) family protein] -0.451 -0.171
121 245006_at ATCG00340 PSAB -0.446 0.663
122 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.446 0.189
123 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta -0.445 0.253
124 244976_at ATCG00720 PETB, photosynthetic electron transfer B -0.443 0.089
125 244903_at ATMG00660 ORF149 -0.439 0.310
126 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.435 0.112
127 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.433 0.072
128 244962_at ATCG01050 NDHD -0.430 0.275
129 244935_at ATCG01090 NDHI -0.430 0.217
130 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.414 0.096
131 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.410 0.285
132 244906_at ATMG00690 ORF240A -0.393 0.130
133 245020_at ATCG00540 PETA, photosynthetic electron transfer A -0.389 0.408
134 245047_at ATCG00020 PSBA, photosystem II reaction center protein A -0.389 0.322
135 265902_at AT2G25590 [Plant Tudor-like protein] -0.389 0.142
136 244961_at ATCG01040 YCF5 -0.385 0.357
137 249006_at AT5G44660 unknown -0.383 -0.114
138 245926_at AT5G24740 SHBY, SHRUBBY -0.381 0.073
139 247564_at AT5G61140 [U5 small nuclear ribonucleoprotein helicase] -0.372 -0.191