4.0:Information of module
shoot control pSultr2:2
In comparison with shoot hypoxia pRBCS help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009963 positive regulation of flavonoid biosynt... BP 4.774e-09
GO:0009962 regulation of flavonoid biosynthetic pro... BP 7.341e-09
GO:0009813 flavonoid biosynthetic process BP 6.465e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.428e-46
GO:0015979 photosynthesis BP 2.365e-31
GO:0006091 generation of precursor metabolites and ... BP 3.205e-24
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot control pSultr2:2		 Log2 signal ratio
shoot hypoxia pRBCS
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.977 0.748
2 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 0.750 0.149
3 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.734 0.543
4 252650_at AT3G44690 unknown 0.731 0.038
5 250881_at AT5G04080 unknown 0.700 0.286
6 259423_at AT1G13880 [ELM2 domain-containing protein] 0.657 0.329
7 251196_at AT3G62950 [Thioredoxin superfamily protein] 0.626 0.067
8 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.597 0.260
9 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 0.568 0.151
10 245353_at AT4G16000 unknown 0.538 0.129
11 255243_at AT4G05590 unknown 0.535 0.017
12 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.529 0.361
13 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.513 0.245
14 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.511 -0.063
15 260012_at AT1G67865 unknown 0.510 0.214
16 256503_at AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 0.503 0.169
17 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 0.502 0.074
18 263168_at AT1G03020 [Thioredoxin superfamily protein] 0.496 0.166
19 261407_at AT1G18810 [phytochrome kinase substrate-related] 0.492 0.215
20 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.490 -0.030
21 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.487 0.217
22 257502_at AT1G78110 unknown 0.485 -0.086
23 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.483 0.064
24 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.482 0.354
25 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor 0.474 0.209
26 267048_at AT2G34200 [RING/FYVE/PHD zinc finger superfamily protein] 0.470 0.186
27 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.468 0.434
28 255028_at AT4G09890 unknown 0.467 0.252
29 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 0.466 0.034
30 255854_at AT1G67050 unknown 0.461 0.168
31 258017_at AT3G19370 unknown 0.457 -0.265
32 256060_at AT1G07050 [CCT motif family protein] 0.449 0.414
33 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.446 0.264
34 246440_at AT5G17650 [glycine/proline-rich protein] 0.442 0.266
35 254201_at AT4G24130 unknown 0.439 0.064
36 258617_at AT3G03000 [EF hand calcium-binding protein family] 0.438 0.116
37 261046_at AT1G01390 [UDP-Glycosyltransferase superfamily protein] 0.431 0.155
38 247885_at AT5G57830 unknown 0.431 -0.098
39 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.428 -0.088
40 246270_at AT4G36500 unknown 0.428 0.086
41 257551_at AT3G13270 unknown 0.427 0.036
42 265864_at AT2G01750 ATMAP70-3, microtubule-associated proteins 70-3, MAP70-3, microtubule-associated proteins 70-3 0.426 -0.039
43 257714_at AT3G27360 H3.1, histone 3.1 0.422 0.140
44 261212_at AT1G12880 atnudt12, nudix hydrolase homolog 12, NUDT12, nudix hydrolase homolog 12 0.422 0.087
45 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.415 0.171
46 266175_at AT2G02450 ANAC034, Arabidopsis NAC domain containing protein 34, ANAC035, NAC domain containing protein 35, AtLOV1, LOV1, LONG VEGETATIVE PHASE 1, NAC035, NAC domain containing protein 35 0.413 0.066
47 250598_at AT5G07690 ATMYB29, myb domain protein 29, MYB29, myb domain protein 29, PMG2, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2 0.412 0.119
48 247754_at AT5G59080 unknown 0.412 0.192
49 260733_at AT1G17640 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.410 0.196
50 250031_at AT5G18240 ATMYR1, ARABIDOPSIS MYB-RELATED PROTEIN 1, MYR1, myb-related protein 1 0.407 0.112
51 260004_at AT1G67860 unknown 0.407 0.227
52 250975_at AT5G03050 unknown 0.405 0.044
53 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 0.404 0.210
54 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.401 0.129
55 249074_at AT5G44080 [Basic-leucine zipper (bZIP) transcription factor family protein] 0.399 0.076
56 265345_at AT2G22680 WAVH1, WAV3 homolog 1 0.399 -0.238
57 254559_at AT4G19200 [proline-rich family protein] 0.393 0.193
58 255824_at AT2G40530 unknown 0.391 0.018
59 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 0.387 0.011
60 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.385 0.106
61 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 0.384 0.071
62 251454_at AT3G60080 [RING/U-box superfamily protein] 0.384 0.303
63 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.384 0.247
64 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 0.382 0.101
65 263297_at AT2G15310 ARFB1A, ADP-ribosylation factor B1A, ATARFB1A, ADP-ribosylation factor B1A 0.381 0.172
66 267503_at AT2G45600 [alpha/beta-Hydrolases superfamily protein] 0.377 0.107
67 257154_at AT3G27210 unknown 0.376 0.071
68 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 0.376 -0.024
69 248967_at AT5G45350 [proline-rich family protein] 0.374 0.180
70 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.373 0.059
71 260081_at AT1G78170 unknown 0.373 0.127
72 247656_at AT5G59890 ADF4, actin depolymerizing factor 4, ATADF4 0.373 0.264
73 246842_at AT5G26731 unknown 0.373 0.151
74 255870_at AT2G30280 DMS4, DEFECTIVE IN MERISTEM SILENCING 4, RDM4, RNA-directed DNA methylation 4 0.372 -0.015
75 260000_at AT1G68060 ATMAP70-1, microtubule-associated proteins 70-1, MAP70-1, microtubule-associated proteins 70-1 0.372 -0.136
76 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.372 0.225
77 252858_at AT4G39770 TPPH, trehalose-6-phosphate phosphatase H 0.371 0.140
78 259765_at AT1G64370 unknown 0.371 0.168
79 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.370 0.181
80 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.368 0.180
81 259322_at AT3G05270 unknown 0.368 0.005
82 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.368 0.090
83 259340_at AT3G03870 unknown 0.367 0.098
84 259756_at AT1G71080 [RNA polymerase II transcription elongation factor] 0.366 0.182
85 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 0.366 0.126
86 252303_at AT3G49210 [O-acyltransferase (WSD1-like) family protein] 0.362 -0.111
87 260113_at AT1G63300 [Myosin heavy chain-related protein] 0.361 -0.063
88 254998_at AT4G09760 [Protein kinase superfamily protein] 0.360 -0.084
89 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.358 0.134
90 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.358 0.162
91 252045_at AT3G52450 AtPUB22, PUB22, plant U-box 22 0.357 -0.085
92 261545_at AT1G63530 unknown 0.357 0.188
93 256537_at AT1G33340 [ENTH/ANTH/VHS superfamily protein] 0.354 0.017
94 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.351 0.118
95 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 0.351 0.104
96 262921_at AT1G79430 APL, ALTERED PHLOEM DEVELOPMENT, WDY, WOODY 0.349 -0.119
97 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.349 0.151
98 251939_at AT3G53440 [Homeodomain-like superfamily protein] 0.348 0.079
99 259169_at AT3G03520 NPC3, non-specific phospholipase C3 0.343 -0.200
100 257761_at AT3G23090 WDL3 0.338 -0.023
101 255626_at AT4G00780 [TRAF-like family protein] 0.336 0.087
102 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 0.336 0.127
103 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.335 0.063
104 266393_at AT2G41260 ATM17, M17 -1.199 -0.996
105 244966_at ATCG00600 PETG -1.026 -0.933
106 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 -1.010 -0.191
107 244981_at ATCG00770 RPS8, ribosomal protein S8 -0.961 -1.002
108 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.932 -0.792
109 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.914 -0.696
110 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 -0.908 -0.361
111 264079_at AT2G28490 [RmlC-like cupins superfamily protein] -0.880 -0.612
112 263402_at AT2G04050 [MATE efflux family protein] -0.877 0.021
113 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 -0.876 -0.269
114 264612_at AT1G04560 [AWPM-19-like family protein] -0.867 -0.595
115 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.828 -0.873
116 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 -0.826 -0.962
117 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.824 -0.588
118 257334_at ATMG01370 ORF111D -0.821 -0.786
119 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.819 -0.737
120 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.817 -0.858
121 245008_at ATCG00360 YCF3 -0.816 -0.759
122 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.810 -0.633
123 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.809 -0.864
124 245025_at ATCG00130 ATPF -0.802 -0.972
125 244933_at ATCG01070 NDHE -0.797 -0.671
126 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.797 -0.991
127 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.776 -0.493
128 244967_at ATCG00630 PSAJ -0.773 -0.617
129 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.765 -0.675
130 244934_at ATCG01080 NDHG -0.758 -0.628
131 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 -0.752 -0.448
132 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.738 -0.585
133 244998_at ATCG00180 RPOC1 -0.731 -0.636
134 250624_at AT5G07330 unknown -0.725 -0.621
135 244965_at ATCG00590 ORF31 -0.723 -0.838
136 251838_at AT3G54940 [Papain family cysteine protease] -0.720 -0.676
137 266143_at AT2G38905 [Low temperature and salt responsive protein family] -0.720 -0.389
138 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.719 -0.643
139 247297_at AT5G64100 [Peroxidase superfamily protein] -0.717 -0.515
140 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.714 -0.549
141 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.706 -0.777
142 244932_at ATCG01060 PSAC -0.704 -0.716
143 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.701 -0.677
144 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.698 -0.457
145 256338_at AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.689 -0.344
146 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 -0.673 -0.008
147 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] -0.669 -0.323
148 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.666 -0.534
149 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.662 -0.586
150 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.662 -0.214
151 245017_at ATCG00510 PSAI, photsystem I subunit I -0.657 -0.710
152 245018_at ATCG00520 YCF4 -0.632 -0.510
153 245026_at ATCG00140 ATPH -0.624 -0.627
154 250868_at AT5G03860 MLS, malate synthase -0.620 -0.484
155 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 -0.618 -0.143
156 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.612 -0.418
157 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.612 -0.369
158 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 -0.608 -0.562
159 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.598 -0.600
160 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.595 -0.634
161 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.594 -0.475
162 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 -0.586 -0.532
163 254543_at AT4G19810 ChiC, class V chitinase -0.585 -0.377
164 257947_at AT3G21720 ICL, isocitrate lyase -0.582 -0.370
165 263401_at AT2G04070 [MATE efflux family protein] -0.581 0.141
166 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.573 -0.550
167 247061_at AT5G66780 unknown -0.567 -0.274
168 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.563 -0.604
169 245019_at ATCG00530 YCF10 -0.558 -0.560
170 244997_at ATCG00170 RPOC2 -0.556 -0.520
171 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.554 -0.782
172 249459_at AT5G39580 [Peroxidase superfamily protein] -0.547 0.092
173 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.547 -0.617
174 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.545 -0.271
175 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] -0.533 -0.260
176 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.531 -0.521
177 245015_at ATCG00490 RBCL -0.527 -0.497
178 260890_at AT1G29090 [Cysteine proteinases superfamily protein] -0.523 -0.041
179 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.522 -0.485
180 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.521 -0.386
181 244977_at ATCG00730 PETD, photosynthetic electron transfer D -0.518 -0.404
182 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.512 -0.397
183 244995_at ATCG00150 ATPI -0.511 -0.389
184 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.509 -0.431
185 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.507 -0.586
186 251906_at AT3G53720 ATCHX20, cation/H+ exchanger 20, CHX20, cation/H+ exchanger 20 -0.496 -0.243
187 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.495 -0.573
188 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 -0.489 -0.347
189 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.486 -0.579
190 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.483 -0.290
191 252989_at AT4G38420 sks9, SKU5 similar 9 -0.482 -0.196
192 244906_at ATMG00690 ORF240A -0.481 -0.393
193 266941_at AT2G18980 [Peroxidase superfamily protein] -0.480 -0.147
194 245004_at ATCG00300 YCF9 -0.479 -0.528
195 255807_at AT4G10270 [Wound-responsive family protein] -0.475 0.060
196 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.473 -0.504
197 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.471 -0.461
198 267349_at AT2G40010 [Ribosomal protein L10 family protein] -0.467 -0.126
199 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.466 -0.576
200 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.464 -0.343
201 255905_at AT1G17810 BETA-TIP, beta-tonoplast intrinsic protein -0.463 -0.290
202 253753_at AT4G29030 [Putative membrane lipoprotein] -0.461 -0.348
203 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.459 -0.559
204 244961_at ATCG01040 YCF5 -0.459 -0.383
205 261981_at AT1G33811 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.458 -0.643