4.0:Information of module
shoot control pSultr2:2
In comparison with shoot hypoxia pGL2 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009963 positive regulation of flavonoid biosynt... BP 4.774e-09
GO:0009962 regulation of flavonoid biosynthetic pro... BP 7.341e-09
GO:0009813 flavonoid biosynthetic process BP 6.465e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.428e-46
GO:0015979 photosynthesis BP 2.365e-31
GO:0006091 generation of precursor metabolites and ... BP 3.205e-24
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot control pSultr2:2		 Log2 signal ratio
shoot hypoxia pGL2
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.977 0.895
2 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 0.750 0.472
3 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.734 0.775
4 252650_at AT3G44690 unknown 0.731 0.253
5 250881_at AT5G04080 unknown 0.700 0.650
6 259423_at AT1G13880 [ELM2 domain-containing protein] 0.657 0.587
7 251196_at AT3G62950 [Thioredoxin superfamily protein] 0.626 0.344
8 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.597 0.549
9 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 0.568 0.374
10 245353_at AT4G16000 unknown 0.538 0.259
11 255243_at AT4G05590 unknown 0.535 0.434
12 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.529 0.527
13 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.513 0.518
14 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.511 0.386
15 260012_at AT1G67865 unknown 0.510 0.365
16 256503_at AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 0.503 0.259
17 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 0.502 0.342
18 263168_at AT1G03020 [Thioredoxin superfamily protein] 0.496 0.444
19 261407_at AT1G18810 [phytochrome kinase substrate-related] 0.492 0.428
20 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.490 0.166
21 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.487 0.373
22 257502_at AT1G78110 unknown 0.485 0.212
23 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.483 0.421
24 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.482 0.457
25 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor 0.474 0.405
26 267048_at AT2G34200 [RING/FYVE/PHD zinc finger superfamily protein] 0.470 0.180
27 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.468 0.604
28 255028_at AT4G09890 unknown 0.467 0.530
29 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 0.466 0.322
30 255854_at AT1G67050 unknown 0.461 0.432
31 258017_at AT3G19370 unknown 0.457 0.181
32 256060_at AT1G07050 [CCT motif family protein] 0.449 0.055
33 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.446 0.451
34 246440_at AT5G17650 [glycine/proline-rich protein] 0.442 0.466
35 254201_at AT4G24130 unknown 0.439 0.365
36 258617_at AT3G03000 [EF hand calcium-binding protein family] 0.438 0.324
37 261046_at AT1G01390 [UDP-Glycosyltransferase superfamily protein] 0.431 0.207
38 247885_at AT5G57830 unknown 0.431 0.131
39 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.428 -0.078
40 246270_at AT4G36500 unknown 0.428 0.195
41 257551_at AT3G13270 unknown 0.427 -0.020
42 265864_at AT2G01750 ATMAP70-3, microtubule-associated proteins 70-3, MAP70-3, microtubule-associated proteins 70-3 0.426 0.019
43 257714_at AT3G27360 H3.1, histone 3.1 0.422 0.114
44 261212_at AT1G12880 atnudt12, nudix hydrolase homolog 12, NUDT12, nudix hydrolase homolog 12 0.422 0.570
45 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.415 0.648
46 266175_at AT2G02450 ANAC034, Arabidopsis NAC domain containing protein 34, ANAC035, NAC domain containing protein 35, AtLOV1, LOV1, LONG VEGETATIVE PHASE 1, NAC035, NAC domain containing protein 35 0.413 0.355
47 250598_at AT5G07690 ATMYB29, myb domain protein 29, MYB29, myb domain protein 29, PMG2, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2 0.412 0.288
48 247754_at AT5G59080 unknown 0.412 0.327
49 260733_at AT1G17640 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.410 0.065
50 250031_at AT5G18240 ATMYR1, ARABIDOPSIS MYB-RELATED PROTEIN 1, MYR1, myb-related protein 1 0.407 0.267
51 260004_at AT1G67860 unknown 0.407 0.350
52 250975_at AT5G03050 unknown 0.405 0.093
53 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 0.404 0.313
54 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.401 0.272
55 249074_at AT5G44080 [Basic-leucine zipper (bZIP) transcription factor family protein] 0.399 0.263
56 265345_at AT2G22680 WAVH1, WAV3 homolog 1 0.399 0.241
57 254559_at AT4G19200 [proline-rich family protein] 0.393 0.313
58 255824_at AT2G40530 unknown 0.391 0.175
59 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 0.387 0.279
60 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.385 0.285
61 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 0.384 0.294
62 251454_at AT3G60080 [RING/U-box superfamily protein] 0.384 0.424
63 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.384 0.347
64 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 0.382 0.322
65 263297_at AT2G15310 ARFB1A, ADP-ribosylation factor B1A, ATARFB1A, ADP-ribosylation factor B1A 0.381 0.406
66 267503_at AT2G45600 [alpha/beta-Hydrolases superfamily protein] 0.377 0.261
67 257154_at AT3G27210 unknown 0.376 0.103
68 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 0.376 0.178
69 248967_at AT5G45350 [proline-rich family protein] 0.374 0.338
70 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.373 0.192
71 260081_at AT1G78170 unknown 0.373 0.368
72 247656_at AT5G59890 ADF4, actin depolymerizing factor 4, ATADF4 0.373 0.286
73 246842_at AT5G26731 unknown 0.373 0.472
74 255870_at AT2G30280 DMS4, DEFECTIVE IN MERISTEM SILENCING 4, RDM4, RNA-directed DNA methylation 4 0.372 0.118
75 260000_at AT1G68060 ATMAP70-1, microtubule-associated proteins 70-1, MAP70-1, microtubule-associated proteins 70-1 0.372 -0.020
76 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.372 0.362
77 252858_at AT4G39770 TPPH, trehalose-6-phosphate phosphatase H 0.371 0.267
78 259765_at AT1G64370 unknown 0.371 0.310
79 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.370 0.293
80 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.368 0.310
81 259322_at AT3G05270 unknown 0.368 0.065
82 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.368 0.295
83 259340_at AT3G03870 unknown 0.367 0.252
84 259756_at AT1G71080 [RNA polymerase II transcription elongation factor] 0.366 0.374
85 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 0.366 0.032
86 252303_at AT3G49210 [O-acyltransferase (WSD1-like) family protein] 0.362 0.184
87 260113_at AT1G63300 [Myosin heavy chain-related protein] 0.361 0.004
88 254998_at AT4G09760 [Protein kinase superfamily protein] 0.360 0.266
89 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.358 0.350
90 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.358 0.338
91 252045_at AT3G52450 AtPUB22, PUB22, plant U-box 22 0.357 0.155
92 261545_at AT1G63530 unknown 0.357 0.322
93 256537_at AT1G33340 [ENTH/ANTH/VHS superfamily protein] 0.354 0.357
94 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.351 0.391
95 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 0.351 0.281
96 262921_at AT1G79430 APL, ALTERED PHLOEM DEVELOPMENT, WDY, WOODY 0.349 0.185
97 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.349 0.377
98 251939_at AT3G53440 [Homeodomain-like superfamily protein] 0.348 0.178
99 259169_at AT3G03520 NPC3, non-specific phospholipase C3 0.343 0.224
100 257761_at AT3G23090 WDL3 0.338 0.255
101 255626_at AT4G00780 [TRAF-like family protein] 0.336 0.185
102 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 0.336 0.017
103 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.335 0.167
104 266393_at AT2G41260 ATM17, M17 -1.199 -0.554
105 244966_at ATCG00600 PETG -1.026 -0.938
106 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 -1.010 -0.170
107 244981_at ATCG00770 RPS8, ribosomal protein S8 -0.961 -0.988
108 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.932 -0.813
109 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.914 -0.618
110 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 -0.908 -0.297
111 264079_at AT2G28490 [RmlC-like cupins superfamily protein] -0.880 -0.500
112 263402_at AT2G04050 [MATE efflux family protein] -0.877 -0.207
113 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 -0.876 -0.258
114 264612_at AT1G04560 [AWPM-19-like family protein] -0.867 -0.602
115 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.828 -0.820
116 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 -0.826 -0.705
117 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.824 -0.734
118 257334_at ATMG01370 ORF111D -0.821 -0.531
119 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.819 -0.796
120 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.817 -0.742
121 245008_at ATCG00360 YCF3 -0.816 -0.765
122 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.810 -0.459
123 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.809 -0.767
124 245025_at ATCG00130 ATPF -0.802 -0.781
125 244933_at ATCG01070 NDHE -0.797 -0.584
126 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.797 -0.807
127 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.776 -0.569
128 244967_at ATCG00630 PSAJ -0.773 -0.523
129 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.765 -0.693
130 244934_at ATCG01080 NDHG -0.758 -0.567
131 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 -0.752 -0.549
132 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.738 -0.554
133 244998_at ATCG00180 RPOC1 -0.731 -0.522
134 250624_at AT5G07330 unknown -0.725 -0.540
135 244965_at ATCG00590 ORF31 -0.723 -0.620
136 251838_at AT3G54940 [Papain family cysteine protease] -0.720 -0.448
137 266143_at AT2G38905 [Low temperature and salt responsive protein family] -0.720 -0.443
138 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.719 -0.657
139 247297_at AT5G64100 [Peroxidase superfamily protein] -0.717 -0.591
140 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.714 -0.640
141 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.706 -0.745
142 244932_at ATCG01060 PSAC -0.704 -0.664
143 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.701 -0.646
144 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.698 -0.351
145 256338_at AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.689 -0.281
146 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 -0.673 -0.200
147 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] -0.669 -0.513
148 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.666 -0.536
149 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.662 -0.664
150 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.662 -0.354
151 245017_at ATCG00510 PSAI, photsystem I subunit I -0.657 -0.576
152 245018_at ATCG00520 YCF4 -0.632 -0.537
153 245026_at ATCG00140 ATPH -0.624 -0.451
154 250868_at AT5G03860 MLS, malate synthase -0.620 -0.597
155 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 -0.618 -0.283
156 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.612 -0.522
157 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.612 -0.435
158 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 -0.608 -0.417
159 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.598 -0.555
160 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.595 -0.511
161 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.594 -0.445
162 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 -0.586 -0.368
163 254543_at AT4G19810 ChiC, class V chitinase -0.585 -0.582
164 257947_at AT3G21720 ICL, isocitrate lyase -0.582 -0.394
165 263401_at AT2G04070 [MATE efflux family protein] -0.581 -0.100
166 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.573 -0.473
167 247061_at AT5G66780 unknown -0.567 -0.339
168 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.563 -0.537
169 245019_at ATCG00530 YCF10 -0.558 -0.515
170 244997_at ATCG00170 RPOC2 -0.556 -0.518
171 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.554 -0.651
172 249459_at AT5G39580 [Peroxidase superfamily protein] -0.547 -0.129
173 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.547 -0.491
174 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.545 -0.269
175 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] -0.533 -0.382
176 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.531 -0.437
177 245015_at ATCG00490 RBCL -0.527 -0.460
178 260890_at AT1G29090 [Cysteine proteinases superfamily protein] -0.523 -0.240
179 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.522 -0.437
180 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.521 -0.343
181 244977_at ATCG00730 PETD, photosynthetic electron transfer D -0.518 -0.420
182 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.512 -0.480
183 244995_at ATCG00150 ATPI -0.511 -0.595
184 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.509 -0.437
185 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.507 -0.517
186 251906_at AT3G53720 ATCHX20, cation/H+ exchanger 20, CHX20, cation/H+ exchanger 20 -0.496 -0.298
187 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.495 -0.653
188 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 -0.489 -0.363
189 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.486 -0.547
190 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.483 -0.396
191 252989_at AT4G38420 sks9, SKU5 similar 9 -0.482 -0.146
192 244906_at ATMG00690 ORF240A -0.481 -0.350
193 266941_at AT2G18980 [Peroxidase superfamily protein] -0.480 -0.221
194 245004_at ATCG00300 YCF9 -0.479 -0.430
195 255807_at AT4G10270 [Wound-responsive family protein] -0.475 0.100
196 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.473 -0.405
197 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.471 -0.374
198 267349_at AT2G40010 [Ribosomal protein L10 family protein] -0.467 -0.272
199 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.466 -0.524
200 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.464 -0.274
201 255905_at AT1G17810 BETA-TIP, beta-tonoplast intrinsic protein -0.463 -0.234
202 253753_at AT4G29030 [Putative membrane lipoprotein] -0.461 -0.070
203 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.459 -0.489
204 244961_at ATCG01040 YCF5 -0.459 -0.342
205 261981_at AT1G33811 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.458 -0.227