4.0:Information of module
shoot control pSultr2:2
In comparison with shoot hypoxia p35S help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009963 positive regulation of flavonoid biosynt... BP 4.774e-09
GO:0009962 regulation of flavonoid biosynthetic pro... BP 7.341e-09
GO:0009813 flavonoid biosynthetic process BP 6.465e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.428e-46
GO:0015979 photosynthesis BP 2.365e-31
GO:0006091 generation of precursor metabolites and ... BP 3.205e-24
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot control pSultr2:2		 Log2 signal ratio
shoot hypoxia p35S
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.977 0.712
2 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 0.750 0.162
3 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.734 0.309
4 252650_at AT3G44690 unknown 0.731 0.053
5 250881_at AT5G04080 unknown 0.700 0.268
6 259423_at AT1G13880 [ELM2 domain-containing protein] 0.657 0.139
7 251196_at AT3G62950 [Thioredoxin superfamily protein] 0.626 0.146
8 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.597 0.071
9 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 0.568 0.286
10 245353_at AT4G16000 unknown 0.538 0.172
11 255243_at AT4G05590 unknown 0.535 0.225
12 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.529 0.390
13 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.513 0.079
14 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.511 0.143
15 260012_at AT1G67865 unknown 0.510 0.198
16 256503_at AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 0.503 0.195
17 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 0.502 0.069
18 263168_at AT1G03020 [Thioredoxin superfamily protein] 0.496 0.334
19 261407_at AT1G18810 [phytochrome kinase substrate-related] 0.492 0.272
20 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.490 -0.019
21 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.487 0.237
22 257502_at AT1G78110 unknown 0.485 0.140
23 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.483 0.108
24 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.482 0.404
25 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor 0.474 0.334
26 267048_at AT2G34200 [RING/FYVE/PHD zinc finger superfamily protein] 0.470 0.082
27 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.468 0.510
28 255028_at AT4G09890 unknown 0.467 0.500
29 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 0.466 0.230
30 255854_at AT1G67050 unknown 0.461 0.314
31 258017_at AT3G19370 unknown 0.457 -0.086
32 256060_at AT1G07050 [CCT motif family protein] 0.449 0.121
33 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.446 0.413
34 246440_at AT5G17650 [glycine/proline-rich protein] 0.442 0.231
35 254201_at AT4G24130 unknown 0.439 0.275
36 258617_at AT3G03000 [EF hand calcium-binding protein family] 0.438 0.267
37 261046_at AT1G01390 [UDP-Glycosyltransferase superfamily protein] 0.431 -0.005
38 247885_at AT5G57830 unknown 0.431 0.005
39 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.428 -0.003
40 246270_at AT4G36500 unknown 0.428 0.175
41 257551_at AT3G13270 unknown 0.427 -0.091
42 265864_at AT2G01750 ATMAP70-3, microtubule-associated proteins 70-3, MAP70-3, microtubule-associated proteins 70-3 0.426 -0.122
43 257714_at AT3G27360 H3.1, histone 3.1 0.422 0.537
44 261212_at AT1G12880 atnudt12, nudix hydrolase homolog 12, NUDT12, nudix hydrolase homolog 12 0.422 0.009
45 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.415 0.109
46 266175_at AT2G02450 ANAC034, Arabidopsis NAC domain containing protein 34, ANAC035, NAC domain containing protein 35, AtLOV1, LOV1, LONG VEGETATIVE PHASE 1, NAC035, NAC domain containing protein 35 0.413 0.147
47 250598_at AT5G07690 ATMYB29, myb domain protein 29, MYB29, myb domain protein 29, PMG2, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2 0.412 0.244
48 247754_at AT5G59080 unknown 0.412 0.184
49 260733_at AT1G17640 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.410 0.089
50 250031_at AT5G18240 ATMYR1, ARABIDOPSIS MYB-RELATED PROTEIN 1, MYR1, myb-related protein 1 0.407 0.004
51 260004_at AT1G67860 unknown 0.407 0.203
52 250975_at AT5G03050 unknown 0.405 0.127
53 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 0.404 0.278
54 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.401 0.203
55 249074_at AT5G44080 [Basic-leucine zipper (bZIP) transcription factor family protein] 0.399 0.107
56 265345_at AT2G22680 WAVH1, WAV3 homolog 1 0.399 0.025
57 254559_at AT4G19200 [proline-rich family protein] 0.393 0.182
58 255824_at AT2G40530 unknown 0.391 0.155
59 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 0.387 0.110
60 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.385 0.236
61 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 0.384 0.088
62 251454_at AT3G60080 [RING/U-box superfamily protein] 0.384 0.180
63 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.384 0.325
64 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 0.382 0.060
65 263297_at AT2G15310 ARFB1A, ADP-ribosylation factor B1A, ATARFB1A, ADP-ribosylation factor B1A 0.381 0.153
66 267503_at AT2G45600 [alpha/beta-Hydrolases superfamily protein] 0.377 0.105
67 257154_at AT3G27210 unknown 0.376 0.013
68 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 0.376 0.058
69 248967_at AT5G45350 [proline-rich family protein] 0.374 0.175
70 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.373 0.150
71 260081_at AT1G78170 unknown 0.373 0.265
72 247656_at AT5G59890 ADF4, actin depolymerizing factor 4, ATADF4 0.373 0.236
73 246842_at AT5G26731 unknown 0.373 0.412
74 255870_at AT2G30280 DMS4, DEFECTIVE IN MERISTEM SILENCING 4, RDM4, RNA-directed DNA methylation 4 0.372 0.100
75 260000_at AT1G68060 ATMAP70-1, microtubule-associated proteins 70-1, MAP70-1, microtubule-associated proteins 70-1 0.372 -0.002
76 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.372 0.179
77 252858_at AT4G39770 TPPH, trehalose-6-phosphate phosphatase H 0.371 0.168
78 259765_at AT1G64370 unknown 0.371 0.176
79 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.370 0.210
80 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.368 0.116
81 259322_at AT3G05270 unknown 0.368 0.076
82 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.368 -0.041
83 259340_at AT3G03870 unknown 0.367 0.145
84 259756_at AT1G71080 [RNA polymerase II transcription elongation factor] 0.366 0.058
85 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 0.366 0.027
86 252303_at AT3G49210 [O-acyltransferase (WSD1-like) family protein] 0.362 -0.109
87 260113_at AT1G63300 [Myosin heavy chain-related protein] 0.361 0.052
88 254998_at AT4G09760 [Protein kinase superfamily protein] 0.360 0.005
89 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.358 0.322
90 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.358 0.304
91 252045_at AT3G52450 AtPUB22, PUB22, plant U-box 22 0.357 0.119
92 261545_at AT1G63530 unknown 0.357 0.072
93 256537_at AT1G33340 [ENTH/ANTH/VHS superfamily protein] 0.354 0.104
94 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.351 0.080
95 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 0.351 0.206
96 262921_at AT1G79430 APL, ALTERED PHLOEM DEVELOPMENT, WDY, WOODY 0.349 -0.064
97 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.349 0.332
98 251939_at AT3G53440 [Homeodomain-like superfamily protein] 0.348 0.096
99 259169_at AT3G03520 NPC3, non-specific phospholipase C3 0.343 0.017
100 257761_at AT3G23090 WDL3 0.338 0.178
101 255626_at AT4G00780 [TRAF-like family protein] 0.336 0.036
102 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 0.336 -0.021
103 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.335 -0.040
104 266393_at AT2G41260 ATM17, M17 -1.199 -0.026
105 244966_at ATCG00600 PETG -1.026 -0.853
106 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 -1.010 -0.189
107 244981_at ATCG00770 RPS8, ribosomal protein S8 -0.961 -1.209
108 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.932 0.258
109 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.914 0.048
110 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 -0.908 -0.043
111 264079_at AT2G28490 [RmlC-like cupins superfamily protein] -0.880 0.008
112 263402_at AT2G04050 [MATE efflux family protein] -0.877 0.043
113 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 -0.876 -0.069
114 264612_at AT1G04560 [AWPM-19-like family protein] -0.867 0.000
115 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.828 -0.931
116 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 -0.826 -0.024
117 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.824 0.202
118 257334_at ATMG01370 ORF111D -0.821 -0.569
119 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.819 -0.799
120 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.817 -0.904
121 245008_at ATCG00360 YCF3 -0.816 -0.887
122 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.810 -0.019
123 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.809 -1.004
124 245025_at ATCG00130 ATPF -0.802 -0.956
125 244933_at ATCG01070 NDHE -0.797 -0.763
126 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.797 -1.146
127 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.776 0.096
128 244967_at ATCG00630 PSAJ -0.773 -0.543
129 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.765 -0.027
130 244934_at ATCG01080 NDHG -0.758 -0.689
131 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 -0.752 0.061
132 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.738 -0.084
133 244998_at ATCG00180 RPOC1 -0.731 -0.659
134 250624_at AT5G07330 unknown -0.725 0.135
135 244965_at ATCG00590 ORF31 -0.723 -0.608
136 251838_at AT3G54940 [Papain family cysteine protease] -0.720 -0.121
137 266143_at AT2G38905 [Low temperature and salt responsive protein family] -0.720 0.139
138 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.719 -0.698
139 247297_at AT5G64100 [Peroxidase superfamily protein] -0.717 0.007
140 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.714 0.018
141 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.706 -0.858
142 244932_at ATCG01060 PSAC -0.704 -0.759
143 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.701 -0.758
144 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.698 0.059
145 256338_at AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.689 -0.082
146 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 -0.673 -0.001
147 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] -0.669 0.208
148 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.666 0.045
149 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.662 -0.649
150 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.662 -0.137
151 245017_at ATCG00510 PSAI, photsystem I subunit I -0.657 -0.745
152 245018_at ATCG00520 YCF4 -0.632 -0.583
153 245026_at ATCG00140 ATPH -0.624 -0.562
154 250868_at AT5G03860 MLS, malate synthase -0.620 -0.075
155 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 -0.618 -0.076
156 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.612 -0.506
157 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.612 -0.174
158 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 -0.608 0.033
159 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.598 -0.655
160 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.595 -0.665
161 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.594 -0.068
162 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 -0.586 0.293
163 254543_at AT4G19810 ChiC, class V chitinase -0.585 0.078
164 257947_at AT3G21720 ICL, isocitrate lyase -0.582 -0.111
165 263401_at AT2G04070 [MATE efflux family protein] -0.581 0.144
166 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.573 -0.072
167 247061_at AT5G66780 unknown -0.567 0.272
168 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.563 -0.588
169 245019_at ATCG00530 YCF10 -0.558 -0.645
170 244997_at ATCG00170 RPOC2 -0.556 -0.621
171 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.554 -0.763
172 249459_at AT5G39580 [Peroxidase superfamily protein] -0.547 0.182
173 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.547 -0.659
174 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.545 -0.151
175 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] -0.533 0.120
176 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.531 -0.511
177 245015_at ATCG00490 RBCL -0.527 -0.527
178 260890_at AT1G29090 [Cysteine proteinases superfamily protein] -0.523 0.182
179 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.522 -0.009
180 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.521 -0.213
181 244977_at ATCG00730 PETD, photosynthetic electron transfer D -0.518 -0.457
182 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.512 0.098
183 244995_at ATCG00150 ATPI -0.511 -0.631
184 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.509 0.061
185 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.507 -0.642
186 251906_at AT3G53720 ATCHX20, cation/H+ exchanger 20, CHX20, cation/H+ exchanger 20 -0.496 -0.225
187 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.495 -0.665
188 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 -0.489 0.143
189 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.486 -0.611
190 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.483 0.181
191 252989_at AT4G38420 sks9, SKU5 similar 9 -0.482 -0.180
192 244906_at ATMG00690 ORF240A -0.481 -0.393
193 266941_at AT2G18980 [Peroxidase superfamily protein] -0.480 0.055
194 245004_at ATCG00300 YCF9 -0.479 -0.552
195 255807_at AT4G10270 [Wound-responsive family protein] -0.475 0.083
196 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.473 -0.390
197 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.471 -0.417
198 267349_at AT2G40010 [Ribosomal protein L10 family protein] -0.467 -0.107
199 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.466 -0.513
200 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.464 -0.227
201 255905_at AT1G17810 BETA-TIP, beta-tonoplast intrinsic protein -0.463 0.046
202 253753_at AT4G29030 [Putative membrane lipoprotein] -0.461 -0.188
203 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.459 -0.684
204 244961_at ATCG01040 YCF5 -0.459 -0.385
205 261981_at AT1G33811 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.458 -0.203