4.0:Information of module
shoot control pSultr2:2
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009963 positive regulation of flavonoid biosynt... BP 4.774e-09
GO:0009962 regulation of flavonoid biosynthetic pro... BP 7.341e-09
GO:0009813 flavonoid biosynthetic process BP 6.465e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.428e-46
GO:0015979 photosynthesis BP 2.365e-31
GO:0006091 generation of precursor metabolites and ... BP 3.205e-24
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot control pSultr2:2		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.977 -0.266
2 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 0.750 -0.658
3 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.734 -0.565
4 252650_at AT3G44690 unknown 0.731 -0.693
5 250881_at AT5G04080 unknown 0.700 -0.791
6 259423_at AT1G13880 [ELM2 domain-containing protein] 0.657 0.558
7 251196_at AT3G62950 [Thioredoxin superfamily protein] 0.626 -0.685
8 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.597 0.693
9 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 0.568 -0.351
10 245353_at AT4G16000 unknown 0.538 -0.968
11 255243_at AT4G05590 unknown 0.535 -1.220
12 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.529 -0.715
13 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.513 -0.408
14 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.511 -0.486
15 260012_at AT1G67865 unknown 0.510 -1.064
16 256503_at AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 0.503 0.811
17 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 0.502 -0.004
18 263168_at AT1G03020 [Thioredoxin superfamily protein] 0.496 -0.726
19 261407_at AT1G18810 [phytochrome kinase substrate-related] 0.492 -0.932
20 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.490 -0.325
21 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.487 -0.468
22 257502_at AT1G78110 unknown 0.485 -0.216
23 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.483 -0.029
24 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.482 -0.886
25 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor 0.474 -0.198
26 267048_at AT2G34200 [RING/FYVE/PHD zinc finger superfamily protein] 0.470 0.358
27 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.468 -1.064
28 255028_at AT4G09890 unknown 0.467 -1.023
29 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 0.466 -0.305
30 255854_at AT1G67050 unknown 0.461 -0.421
31 258017_at AT3G19370 unknown 0.457 -0.725
32 256060_at AT1G07050 [CCT motif family protein] 0.449 0.320
33 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.446 -0.548
34 246440_at AT5G17650 [glycine/proline-rich protein] 0.442 0.114
35 254201_at AT4G24130 unknown 0.439 -0.563
36 258617_at AT3G03000 [EF hand calcium-binding protein family] 0.438 -0.668
37 261046_at AT1G01390 [UDP-Glycosyltransferase superfamily protein] 0.431 -0.982
38 247885_at AT5G57830 unknown 0.431 -0.545
39 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.428 -1.066
40 246270_at AT4G36500 unknown 0.428 -0.236
41 257551_at AT3G13270 unknown 0.427 -0.389
42 265864_at AT2G01750 ATMAP70-3, microtubule-associated proteins 70-3, MAP70-3, microtubule-associated proteins 70-3 0.426 -0.594
43 257714_at AT3G27360 H3.1, histone 3.1 0.422 1.438
44 261212_at AT1G12880 atnudt12, nudix hydrolase homolog 12, NUDT12, nudix hydrolase homolog 12 0.422 -0.241
45 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.415 -0.315
46 266175_at AT2G02450 ANAC034, Arabidopsis NAC domain containing protein 34, ANAC035, NAC domain containing protein 35, AtLOV1, LOV1, LONG VEGETATIVE PHASE 1, NAC035, NAC domain containing protein 35 0.413 -0.278
47 250598_at AT5G07690 ATMYB29, myb domain protein 29, MYB29, myb domain protein 29, PMG2, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2 0.412 -0.875
48 247754_at AT5G59080 unknown 0.412 -0.198
49 260733_at AT1G17640 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.410 0.343
50 250031_at AT5G18240 ATMYR1, ARABIDOPSIS MYB-RELATED PROTEIN 1, MYR1, myb-related protein 1 0.407 -1.166
51 260004_at AT1G67860 unknown 0.407 -0.226
52 250975_at AT5G03050 unknown 0.405 -0.083
53 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 0.404 -1.119
54 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.401 0.017
55 249074_at AT5G44080 [Basic-leucine zipper (bZIP) transcription factor family protein] 0.399 0.170
56 265345_at AT2G22680 WAVH1, WAV3 homolog 1 0.399 -0.070
57 254559_at AT4G19200 [proline-rich family protein] 0.393 -0.033
58 255824_at AT2G40530 unknown 0.391 -0.057
59 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 0.387 0.079
60 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.385 -0.983
61 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 0.384 0.972
62 251454_at AT3G60080 [RING/U-box superfamily protein] 0.384 -0.104
63 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.384 -0.984
64 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 0.382 -0.090
65 263297_at AT2G15310 ARFB1A, ADP-ribosylation factor B1A, ATARFB1A, ADP-ribosylation factor B1A 0.381 -0.585
66 267503_at AT2G45600 [alpha/beta-Hydrolases superfamily protein] 0.377 0.222
67 257154_at AT3G27210 unknown 0.376 -1.233
68 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 0.376 0.757
69 248967_at AT5G45350 [proline-rich family protein] 0.374 0.195
70 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.373 -0.992
71 260081_at AT1G78170 unknown 0.373 0.189
72 247656_at AT5G59890 ADF4, actin depolymerizing factor 4, ATADF4 0.373 0.054
73 246842_at AT5G26731 unknown 0.373 0.085
74 255870_at AT2G30280 DMS4, DEFECTIVE IN MERISTEM SILENCING 4, RDM4, RNA-directed DNA methylation 4 0.372 0.199
75 260000_at AT1G68060 ATMAP70-1, microtubule-associated proteins 70-1, MAP70-1, microtubule-associated proteins 70-1 0.372 0.485
76 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.372 0.096
77 252858_at AT4G39770 TPPH, trehalose-6-phosphate phosphatase H 0.371 0.287
78 259765_at AT1G64370 unknown 0.371 -0.759
79 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.370 0.517
80 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.368 0.646
81 259322_at AT3G05270 unknown 0.368 -0.158
82 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.368 0.713
83 259340_at AT3G03870 unknown 0.367 0.184
84 259756_at AT1G71080 [RNA polymerase II transcription elongation factor] 0.366 0.525
85 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 0.366 -0.831
86 252303_at AT3G49210 [O-acyltransferase (WSD1-like) family protein] 0.362 -0.714
87 260113_at AT1G63300 [Myosin heavy chain-related protein] 0.361 -0.940
88 254998_at AT4G09760 [Protein kinase superfamily protein] 0.360 0.297
89 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.358 -0.200
90 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.358 1.081
91 252045_at AT3G52450 AtPUB22, PUB22, plant U-box 22 0.357 0.061
92 261545_at AT1G63530 unknown 0.357 -1.308
93 256537_at AT1G33340 [ENTH/ANTH/VHS superfamily protein] 0.354 -0.927
94 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.351 -0.826
95 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 0.351 -0.259
96 262921_at AT1G79430 APL, ALTERED PHLOEM DEVELOPMENT, WDY, WOODY 0.349 -0.065
97 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.349 -0.317
98 251939_at AT3G53440 [Homeodomain-like superfamily protein] 0.348 -0.426
99 259169_at AT3G03520 NPC3, non-specific phospholipase C3 0.343 0.260
100 257761_at AT3G23090 WDL3 0.338 -0.164
101 255626_at AT4G00780 [TRAF-like family protein] 0.336 0.074
102 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 0.336 -0.453
103 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.335 -0.083
104 266393_at AT2G41260 ATM17, M17 -1.199 -0.905
105 244966_at ATCG00600 PETG -1.026 -0.656
106 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 -1.010 1.351
107 244981_at ATCG00770 RPS8, ribosomal protein S8 -0.961 -0.197
108 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.932 0.178
109 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.914 -0.014
110 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 -0.908 0.794
111 264079_at AT2G28490 [RmlC-like cupins superfamily protein] -0.880 0.611
112 263402_at AT2G04050 [MATE efflux family protein] -0.877 0.003
113 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 -0.876 0.040
114 264612_at AT1G04560 [AWPM-19-like family protein] -0.867 0.856
115 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.828 -0.483
116 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 -0.826 0.587
117 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.824 1.499
118 257334_at ATMG01370 ORF111D -0.821 -0.262
119 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.819 -0.044
120 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.817 -0.038
121 245008_at ATCG00360 YCF3 -0.816 -0.067
122 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.810 -0.778
123 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.809 -0.231
124 245025_at ATCG00130 ATPF -0.802 -0.878
125 244933_at ATCG01070 NDHE -0.797 -1.093
126 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.797 0.478
127 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.776 0.536
128 244967_at ATCG00630 PSAJ -0.773 0.379
129 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.765 -0.515
130 244934_at ATCG01080 NDHG -0.758 -0.581
131 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 -0.752 0.193
132 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.738 -0.278
133 244998_at ATCG00180 RPOC1 -0.731 0.023
134 250624_at AT5G07330 unknown -0.725 0.730
135 244965_at ATCG00590 ORF31 -0.723 -1.108
136 251838_at AT3G54940 [Papain family cysteine protease] -0.720 0.822
137 266143_at AT2G38905 [Low temperature and salt responsive protein family] -0.720 1.065
138 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.719 -0.700
139 247297_at AT5G64100 [Peroxidase superfamily protein] -0.717 0.640
140 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.714 0.502
141 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.706 -0.484
142 244932_at ATCG01060 PSAC -0.704 -1.074
143 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.701 0.149
144 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.698 1.264
145 256338_at AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.689 0.262
146 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 -0.673 -0.232
147 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] -0.669 1.110
148 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.666 0.107
149 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.662 -0.487
150 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.662 0.147
151 245017_at ATCG00510 PSAI, photsystem I subunit I -0.657 -0.117
152 245018_at ATCG00520 YCF4 -0.632 -0.670
153 245026_at ATCG00140 ATPH -0.624 0.097
154 250868_at AT5G03860 MLS, malate synthase -0.620 1.657
155 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 -0.618 0.163
156 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.612 -0.483
157 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.612 0.589
158 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 -0.608 0.024
159 244975_at ATCG00710 PSBH, photosystem II reaction center protein H -0.598 0.067
160 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.595 0.249
161 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.594 -0.222
162 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 -0.586 0.946
163 254543_at AT4G19810 ChiC, class V chitinase -0.585 0.558
164 257947_at AT3G21720 ICL, isocitrate lyase -0.582 0.785
165 263401_at AT2G04070 [MATE efflux family protein] -0.581 -0.849
166 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.573 0.513
167 247061_at AT5G66780 unknown -0.567 0.810
168 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.563 -0.020
169 245019_at ATCG00530 YCF10 -0.558 -0.043
170 244997_at ATCG00170 RPOC2 -0.556 -0.393
171 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.554 0.254
172 249459_at AT5G39580 [Peroxidase superfamily protein] -0.547 0.560
173 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.547 0.081
174 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.545 0.061
175 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] -0.533 -0.501
176 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.531 0.514
177 245015_at ATCG00490 RBCL -0.527 -0.502
178 260890_at AT1G29090 [Cysteine proteinases superfamily protein] -0.523 0.187
179 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.522 0.529
180 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.521 -0.709
181 244977_at ATCG00730 PETD, photosynthetic electron transfer D -0.518 -1.159
182 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.512 -0.282
183 244995_at ATCG00150 ATPI -0.511 0.369
184 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.509 0.043
185 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.507 -0.281
186 251906_at AT3G53720 ATCHX20, cation/H+ exchanger 20, CHX20, cation/H+ exchanger 20 -0.496 -0.031
187 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.495 -1.513
188 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 -0.489 1.007
189 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.486 -0.045
190 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.483 0.369
191 252989_at AT4G38420 sks9, SKU5 similar 9 -0.482 0.710
192 244906_at ATMG00690 ORF240A -0.481 -0.364
193 266941_at AT2G18980 [Peroxidase superfamily protein] -0.480 1.535
194 245004_at ATCG00300 YCF9 -0.479 -0.018
195 255807_at AT4G10270 [Wound-responsive family protein] -0.475 0.558
196 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.473 0.755
197 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.471 -0.222
198 267349_at AT2G40010 [Ribosomal protein L10 family protein] -0.467 1.068
199 249271_at AT5G41790 CIP1, COP1-interactive protein 1 -0.466 0.732
200 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.464 0.586
201 255905_at AT1G17810 BETA-TIP, beta-tonoplast intrinsic protein -0.463 -0.329
202 253753_at AT4G29030 [Putative membrane lipoprotein] -0.461 -0.317
203 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.459 0.186
204 244961_at ATCG01040 YCF5 -0.459 0.158
205 261981_at AT1G33811 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.458 -0.738