4.0:Information of module
shoot control pGL2
In comparison with rrd1 IBA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 1.630e-08
GO:0009725 response to hormone BP 4.823e-08
GO:0009813 flavonoid biosynthetic process BP 6.346e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 1.019e-35
GO:0015979 photosynthesis BP 1.763e-18
GO:0006091 generation of precursor metabolites and ... BP 5.529e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot control pGL2		 Log2 signal ratio
rrd1 IBA
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 1.003 0.008
2 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.803 -0.008
3 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.642 0.004
4 259423_at AT1G13880 [ELM2 domain-containing protein] 0.613 -0.022
5 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.581 0.100
6 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.580 -0.054
7 259549_at AT1G35290 ALT1, acyl-lipid thioesterase 1 0.573 0.035
8 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.567 -0.012
9 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.566 -0.064
10 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 0.529 -0.004
11 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] 0.524 0.065
12 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 0.521 0.040
13 252650_at AT3G44690 unknown 0.517 -0.058
14 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.514 -0.108
15 265025_at AT1G24575 unknown 0.502 -0.141
16 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor 0.470 0.047
17 249126_at AT5G43380 TOPP6, type one serine/threonine protein phosphatase 6 0.463 0.035
18 263297_at AT2G15310 ARFB1A, ADP-ribosylation factor B1A, ATARFB1A, ADP-ribosylation factor B1A 0.458 -0.026
19 246440_at AT5G17650 [glycine/proline-rich protein] 0.447 -0.006
20 258880_at AT3G06420 ATG8H, autophagy 8h 0.433 -0.115
21 252133_at AT3G50900 unknown 0.430 -0.015
22 255243_at AT4G05590 unknown 0.430 0.006
23 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.429 -0.021
24 255028_at AT4G09890 unknown 0.427 -0.039
25 246270_at AT4G36500 unknown 0.423 -0.015
26 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.420 0.023
27 245990_at AT5G20640 unknown 0.418 -0.040
28 261407_at AT1G18810 [phytochrome kinase substrate-related] 0.413 0.115
29 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.409 0.047
30 258091_at AT3G14560 unknown 0.407 0.006
31 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 0.404 0.072
32 251454_at AT3G60080 [RING/U-box superfamily protein] 0.403 0.061
33 252866_at AT4G39840 unknown 0.402 0.027
34 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.400 -0.005
35 258617_at AT3G03000 [EF hand calcium-binding protein family] 0.395 -0.009
36 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 0.391 0.061
37 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.390 -0.061
38 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 0.389 -0.038
39 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.385 0.226
40 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.384 0.011
41 261286_at AT1G35780 unknown 0.382 0.021
42 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.382 0.032
43 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 0.377 0.051
44 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 0.374 -0.064
45 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.371 0.012
46 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.368 0.135
47 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.368 0.066
48 248230_at AT5G53830 [VQ motif-containing protein] 0.367 0.009
49 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.366 0.025
50 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 0.365 -0.001
51 263067_at AT2G17550 TRM26, TON1 Recruiting Motif 26 0.362 -0.005
52 246585_at AT5G14750 ATMYB66, myb domain protein 66, MYB66, myb domain protein 66, WER, WEREWOLF, WER1, WEREWOLF 1 0.362 -0.062
53 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.360 -0.033
54 265769_at AT2G48090 unknown 0.358 -0.080
55 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.354 0.014
56 254201_at AT4G24130 unknown 0.351 0.098
57 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.351 0.031
58 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.350 -0.019
59 254362_at AT4G22160 unknown 0.350 -0.090
60 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] 0.348 -0.021
61 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 0.348 -0.010
62 259756_at AT1G71080 [RNA polymerase II transcription elongation factor] 0.348 -0.014
63 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C 0.344 0.045
64 252765_at AT3G42800 unknown 0.342 -0.027
65 247656_at AT5G59890 ADF4, actin depolymerizing factor 4, ATADF4 0.341 -0.013
66 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.340 0.064
67 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.339 -0.085
68 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.339 0.030
69 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.333 -0.030
70 256596_at AT3G28540 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.331 -0.012
71 258527_at AT3G06850 BCE2, DIN3, DARK INDUCIBLE 3, LTA1 0.331 -0.044
72 264872_at AT1G24260 AGL9, AGAMOUS-like 9, SEP3, SEPALLATA3 0.328 -0.040
73 260012_at AT1G67865 unknown 0.327 -0.031
74 266325_at AT2G46630 unknown 0.326 0.052
75 256720_at AT2G34140 [Dof-type zinc finger DNA-binding family protein] 0.326 0.020
76 255854_at AT1G67050 unknown 0.324 0.025
77 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase 0.324 -0.055
78 260004_at AT1G67860 unknown 0.323 -0.014
79 261748_at AT1G76070 unknown 0.323 -0.092
80 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.323 0.000
81 266175_at AT2G02450 ANAC034, Arabidopsis NAC domain containing protein 34, ANAC035, NAC domain containing protein 35, AtLOV1, LOV1, LONG VEGETATIVE PHASE 1, NAC035, NAC domain containing protein 35 0.322 0.074
82 247632_at AT5G60460 [Preprotein translocase Sec, Sec61-beta subunit protein] 0.320 0.035
83 247747_at AT5G59000 [RING/FYVE/PHD zinc finger superfamily protein] 0.319 -0.022
84 248967_at AT5G45350 [proline-rich family protein] 0.318 0.038
85 259340_at AT3G03870 unknown 0.318 -0.040
86 254998_at AT4G09760 [Protein kinase superfamily protein] 0.318 0.001
87 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.316 0.019
88 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.315 -0.020
89 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 0.315 -0.024
90 248596_at AT5G49330 ATMYB111, ARABIDOPSIS MYB DOMAIN PROTEIN 111, MYB111, myb domain protein 111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3 0.314 -0.042
91 263545_at AT2G21560 unknown 0.307 -0.121
92 249783_at AT5G24270 ATSOS3, SALT OVERLY SENSITIVE 3, CBL4, CALCINEURIN B-LIKE PROTEIN 4, SOS3, SALT OVERLY SENSITIVE 3 0.305 -0.065
93 260783_at AT1G06160 ORA59, octadecanoid-responsive Arabidopsis AP2/ERF 59 0.304 -0.118
94 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 0.302 0.005
95 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.300 -0.036
96 256731_at AT3G30340 UMAMIT32, Usually multiple acids move in and out Transporters 32 0.300 -0.041
97 266393_at AT2G41260 ATM17, M17 -1.046 0.834
98 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.975 0.247
99 244981_at ATCG00770 RPS8, ribosomal protein S8 -0.873 -0.042
100 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 -0.859 0.090
101 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.846 0.020
102 244966_at ATCG00600 PETG -0.836 0.010
103 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.831 0.315
104 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.810 -0.040
105 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.770 0.373
106 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 -0.762 0.355
107 250868_at AT5G03860 MLS, malate synthase -0.735 0.021
108 264612_at AT1G04560 [AWPM-19-like family protein] -0.729 0.236
109 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 -0.723 0.298
110 250624_at AT5G07330 unknown -0.720 0.004
111 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.709 -0.019
112 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.708 -0.027
113 251838_at AT3G54940 [Papain family cysteine protease] -0.683 0.333
114 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.671 0.085
115 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.670 0.401
116 264079_at AT2G28490 [RmlC-like cupins superfamily protein] -0.665 0.425
117 247297_at AT5G64100 [Peroxidase superfamily protein] -0.661 0.017
118 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.648 0.024
119 245008_at ATCG00360 YCF3 -0.647 0.002
120 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.638 0.336
121 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 -0.632 -0.011
122 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.630 -0.028
123 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] -0.617 0.430
124 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.613 -0.037
125 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.606 0.156
126 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.588 0.214
127 266143_at AT2G38905 [Low temperature and salt responsive protein family] -0.584 0.355
128 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 -0.568 0.413
129 256338_at AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.560 0.124
130 245017_at ATCG00510 PSAI, photsystem I subunit I -0.532 0.002
131 244995_at ATCG00150 ATPI -0.527 0.038
132 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.526 0.391
133 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.519 -0.077
134 257334_at ATMG01370 ORF111D -0.517 0.319
135 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.517 0.001
136 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.517 0.024
137 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.512 0.031
138 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.508 0.040
139 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.501 0.045
140 260890_at AT1G29090 [Cysteine proteinases superfamily protein] -0.499 -0.123
141 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.497 0.077
142 245070_at AT2G23240 AtMT4b, Arabidopsis thaliana metallothionein 4b -0.480 -0.013
143 266941_at AT2G18980 [Peroxidase superfamily protein] -0.475 0.016
144 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.475 -0.033
145 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 -0.469 0.053
146 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.463 -0.023
147 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.461 0.259
148 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.460 -0.028
149 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] -0.457 0.224
150 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 -0.454 0.228
151 260077_at AT1G73620 [Pathogenesis-related thaumatin superfamily protein] -0.453 0.100
152 245022_at ATCG00560 PSBL, photosystem II reaction center protein L -0.453 -0.001
153 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.440 -0.043
154 253392_at AT4G32650 ATKC1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, AtLKT1, A. thaliana low-K+-tolerant 1, KAT3, potassium channel in Arabidopsis thaliana 3, KC1 -0.435 -0.036
155 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.434 0.308
156 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.434 -0.045
157 244936_at ATCG01100 NDHA -0.432 -0.007
158 251531_at AT3G58550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.429 -0.028
159 245018_at ATCG00520 YCF4 -0.427 0.006
160 250059_at AT5G17820 [Peroxidase superfamily protein] -0.427 0.064
161 247362_at AT5G63140 ATPAP29, purple acid phosphatase 29, PAP29, PAP29, purple acid phosphatase 29 -0.422 0.007
162 257947_at AT3G21720 ICL, isocitrate lyase -0.421 0.072
163 262605_at AT1G15170 [MATE efflux family protein] -0.418 0.031
164 252989_at AT4G38420 sks9, SKU5 similar 9 -0.409 0.013
165 245026_at ATCG00140 ATPH -0.405 0.012
166 247061_at AT5G66780 unknown -0.398 0.257
167 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 -0.394 0.258
168 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.392 0.010
169 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.387 0.021
170 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.386 -0.011
171 259615_at AT1G47980 unknown -0.384 0.238
172 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.383 0.060
173 251065_at AT5G01870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.381 -0.018
174 254543_at AT4G19810 ChiC, class V chitinase -0.377 0.169
175 249006_at AT5G44660 unknown -0.367 -0.069
176 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.366 -0.036
177 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.360 0.031
178 255048_at AT4G09600 GASA3, GAST1 protein homolog 3 -0.360 0.310
179 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 -0.359 -0.024
180 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.353 0.015
181 258424_at AT3G16750 unknown -0.352 0.022
182 256734_at AT3G29390 RIK, RS2-interacting KH protein -0.352 -0.071
183 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.351 0.869
184 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta -0.351 -0.005
185 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.350 -0.009
186 253971_at AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 -0.347 0.055
187 256792_at AT3G22150 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.343 0.031
188 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.340 0.122
189 244962_at ATCG01050 NDHD -0.334 0.057
190 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 -0.332 -0.040
191 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.332 0.051