4.0:Information of module
shoot control pGL2
In comparison with rcf1-1 cold 24h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 1.630e-08
GO:0009725 response to hormone BP 4.823e-08
GO:0009813 flavonoid biosynthetic process BP 6.346e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 1.019e-35
GO:0015979 photosynthesis BP 1.763e-18
GO:0006091 generation of precursor metabolites and ... BP 5.529e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot control pGL2		 Log2 signal ratio
rcf1-1 cold 24h
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 1.003 0.111
2 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.803 0.040
3 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.642 0.131
4 259423_at AT1G13880 [ELM2 domain-containing protein] 0.613 0.053
5 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.581 -0.327
6 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.580 0.167
7 259549_at AT1G35290 ALT1, acyl-lipid thioesterase 1 0.573 -0.026
8 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.567 0.205
9 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.566 -0.082
10 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 0.529 -0.035
11 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] 0.524 -0.070
12 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 0.521 0.112
13 252650_at AT3G44690 unknown 0.517 0.147
14 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.514 0.244
15 265025_at AT1G24575 unknown 0.502 0.202
16 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor 0.470 -0.055
17 249126_at AT5G43380 TOPP6, type one serine/threonine protein phosphatase 6 0.463 -0.108
18 263297_at AT2G15310 ARFB1A, ADP-ribosylation factor B1A, ATARFB1A, ADP-ribosylation factor B1A 0.458 0.062
19 246440_at AT5G17650 [glycine/proline-rich protein] 0.447 0.065
20 258880_at AT3G06420 ATG8H, autophagy 8h 0.433 0.216
21 252133_at AT3G50900 unknown 0.430 0.188
22 255243_at AT4G05590 unknown 0.430 0.101
23 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.429 0.065
24 255028_at AT4G09890 unknown 0.427 -0.094
25 246270_at AT4G36500 unknown 0.423 0.159
26 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.420 0.130
27 245990_at AT5G20640 unknown 0.418 0.031
28 261407_at AT1G18810 [phytochrome kinase substrate-related] 0.413 0.038
29 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.409 0.354
30 258091_at AT3G14560 unknown 0.407 0.090
31 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 0.404 -0.245
32 251454_at AT3G60080 [RING/U-box superfamily protein] 0.403 -0.044
33 252866_at AT4G39840 unknown 0.402 -0.128
34 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.400 -0.064
35 258617_at AT3G03000 [EF hand calcium-binding protein family] 0.395 0.181
36 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 0.391 -0.002
37 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.390 0.285
38 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 0.389 -0.238
39 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.385 0.039
40 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.384 0.041
41 261286_at AT1G35780 unknown 0.382 -0.003
42 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.382 0.245
43 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 0.377 1.071
44 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 0.374 -0.228
45 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.371 -0.233
46 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.368 -0.200
47 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.368 0.148
48 248230_at AT5G53830 [VQ motif-containing protein] 0.367 -0.071
49 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.366 -0.111
50 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 0.365 0.279
51 263067_at AT2G17550 TRM26, TON1 Recruiting Motif 26 0.362 -0.120
52 246585_at AT5G14750 ATMYB66, myb domain protein 66, MYB66, myb domain protein 66, WER, WEREWOLF, WER1, WEREWOLF 1 0.362 0.157
53 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.360 0.139
54 265769_at AT2G48090 unknown 0.358 0.106
55 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.354 0.061
56 254201_at AT4G24130 unknown 0.351 0.142
57 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.351 -0.212
58 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.350 0.135
59 254362_at AT4G22160 unknown 0.350 -0.027
60 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] 0.348 -0.072
61 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 0.348 -0.265
62 259756_at AT1G71080 [RNA polymerase II transcription elongation factor] 0.348 0.152
63 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C 0.344 -0.219
64 252765_at AT3G42800 unknown 0.342 -0.083
65 247656_at AT5G59890 ADF4, actin depolymerizing factor 4, ATADF4 0.341 0.038
66 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.340 0.702
67 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.339 0.101
68 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.339 0.180
69 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.333 -0.174
70 256596_at AT3G28540 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.331 0.098
71 258527_at AT3G06850 BCE2, DIN3, DARK INDUCIBLE 3, LTA1 0.331 -0.049
72 264872_at AT1G24260 AGL9, AGAMOUS-like 9, SEP3, SEPALLATA3 0.328 0.179
73 260012_at AT1G67865 unknown 0.327 0.117
74 266325_at AT2G46630 unknown 0.326 -0.093
75 256720_at AT2G34140 [Dof-type zinc finger DNA-binding family protein] 0.326 0.071
76 255854_at AT1G67050 unknown 0.324 0.040
77 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase 0.324 0.266
78 260004_at AT1G67860 unknown 0.323 0.179
79 261748_at AT1G76070 unknown 0.323 0.281
80 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.323 -0.003
81 266175_at AT2G02450 ANAC034, Arabidopsis NAC domain containing protein 34, ANAC035, NAC domain containing protein 35, AtLOV1, LOV1, LONG VEGETATIVE PHASE 1, NAC035, NAC domain containing protein 35 0.322 0.061
82 247632_at AT5G60460 [Preprotein translocase Sec, Sec61-beta subunit protein] 0.320 0.003
83 247747_at AT5G59000 [RING/FYVE/PHD zinc finger superfamily protein] 0.319 -0.304
84 248967_at AT5G45350 [proline-rich family protein] 0.318 0.060
85 259340_at AT3G03870 unknown 0.318 0.405
86 254998_at AT4G09760 [Protein kinase superfamily protein] 0.318 0.086
87 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.316 -0.109
88 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.315 0.218
89 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 0.315 0.002
90 248596_at AT5G49330 ATMYB111, ARABIDOPSIS MYB DOMAIN PROTEIN 111, MYB111, myb domain protein 111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3 0.314 -0.044
91 263545_at AT2G21560 unknown 0.307 0.193
92 249783_at AT5G24270 ATSOS3, SALT OVERLY SENSITIVE 3, CBL4, CALCINEURIN B-LIKE PROTEIN 4, SOS3, SALT OVERLY SENSITIVE 3 0.305 0.215
93 260783_at AT1G06160 ORA59, octadecanoid-responsive Arabidopsis AP2/ERF 59 0.304 0.139
94 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 0.302 0.062
95 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.300 -0.161
96 256731_at AT3G30340 UMAMIT32, Usually multiple acids move in and out Transporters 32 0.300 0.011
97 266393_at AT2G41260 ATM17, M17 -1.046 0.133
98 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.975 0.350
99 244981_at ATCG00770 RPS8, ribosomal protein S8 -0.873 -0.037
100 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 -0.859 -0.014
101 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.846 0.001
102 244966_at ATCG00600 PETG -0.836 0.029
103 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.831 0.326
104 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.810 0.090
105 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.770 -0.057
106 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 -0.762 0.314
107 250868_at AT5G03860 MLS, malate synthase -0.735 0.031
108 264612_at AT1G04560 [AWPM-19-like family protein] -0.729 0.202
109 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 -0.723 0.167
110 250624_at AT5G07330 unknown -0.720 0.121
111 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.709 0.016
112 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.708 -0.012
113 251838_at AT3G54940 [Papain family cysteine protease] -0.683 0.053
114 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.671 0.148
115 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.670 0.036
116 264079_at AT2G28490 [RmlC-like cupins superfamily protein] -0.665 0.229
117 247297_at AT5G64100 [Peroxidase superfamily protein] -0.661 0.040
118 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.648 -0.002
119 245008_at ATCG00360 YCF3 -0.647 -0.034
120 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.638 0.182
121 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 -0.632 0.265
122 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.630 0.103
123 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] -0.617 0.024
124 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.613 0.194
125 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.606 0.173
126 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.588 0.198
127 266143_at AT2G38905 [Low temperature and salt responsive protein family] -0.584 0.103
128 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 -0.568 0.220
129 256338_at AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.560 0.244
130 245017_at ATCG00510 PSAI, photsystem I subunit I -0.532 -0.027
131 244995_at ATCG00150 ATPI -0.527 -0.008
132 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.526 0.054
133 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.519 -0.086
134 257334_at ATMG01370 ORF111D -0.517 -0.067
135 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.517 0.030
136 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.517 -0.043
137 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.512 0.026
138 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.508 0.098
139 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.501 -0.150
140 260890_at AT1G29090 [Cysteine proteinases superfamily protein] -0.499 -0.030
141 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.497 -0.020
142 245070_at AT2G23240 AtMT4b, Arabidopsis thaliana metallothionein 4b -0.480 -0.039
143 266941_at AT2G18980 [Peroxidase superfamily protein] -0.475 -0.313
144 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.475 -0.003
145 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 -0.469 0.024
146 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.463 -0.009
147 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.461 0.288
148 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.460 -0.002
149 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] -0.457 0.067
150 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 -0.454 0.105
151 260077_at AT1G73620 [Pathogenesis-related thaumatin superfamily protein] -0.453 -0.093
152 245022_at ATCG00560 PSBL, photosystem II reaction center protein L -0.453 0.009
153 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.440 0.002
154 253392_at AT4G32650 ATKC1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, AtLKT1, A. thaliana low-K+-tolerant 1, KAT3, potassium channel in Arabidopsis thaliana 3, KC1 -0.435 -0.067
155 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.434 0.205
156 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.434 0.005
157 244936_at ATCG01100 NDHA -0.432 -0.026
158 251531_at AT3G58550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.429 -0.025
159 245018_at ATCG00520 YCF4 -0.427 0.010
160 250059_at AT5G17820 [Peroxidase superfamily protein] -0.427 0.039
161 247362_at AT5G63140 ATPAP29, purple acid phosphatase 29, PAP29, PAP29, purple acid phosphatase 29 -0.422 -0.543
162 257947_at AT3G21720 ICL, isocitrate lyase -0.421 0.040
163 262605_at AT1G15170 [MATE efflux family protein] -0.418 -0.129
164 252989_at AT4G38420 sks9, SKU5 similar 9 -0.409 -0.403
165 245026_at ATCG00140 ATPH -0.405 0.029
166 247061_at AT5G66780 unknown -0.398 -0.487
167 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 -0.394 0.020
168 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.392 -0.009
169 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.387 0.180
170 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.386 -0.067
171 259615_at AT1G47980 unknown -0.384 0.084
172 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.383 -0.031
173 251065_at AT5G01870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.381 0.078
174 254543_at AT4G19810 ChiC, class V chitinase -0.377 0.133
175 249006_at AT5G44660 unknown -0.367 -0.131
176 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.366 -0.032
177 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.360 -0.066
178 255048_at AT4G09600 GASA3, GAST1 protein homolog 3 -0.360 0.141
179 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 -0.359 -0.229
180 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.353 0.001
181 258424_at AT3G16750 unknown -0.352 -0.005
182 256734_at AT3G29390 RIK, RS2-interacting KH protein -0.352 -0.175
183 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.351 -0.022
184 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta -0.351 0.002
185 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.350 -0.115
186 253971_at AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 -0.347 -0.039
187 256792_at AT3G22150 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.343 -0.044
188 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.340 0.120
189 244962_at ATCG01050 NDHD -0.334 -0.005
190 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 -0.332 0.057
191 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.332 -0.074