4.0:Information of module
shoot control pGL2
In comparison with xyl-grown cell culture- 1h 1mM Suc help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 1.630e-08
GO:0009725 response to hormone BP 4.823e-08
GO:0009813 flavonoid biosynthetic process BP 6.346e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 1.019e-35
GO:0015979 photosynthesis BP 1.763e-18
GO:0006091 generation of precursor metabolites and ... BP 5.529e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoot control pGL2		 Log2 signal ratio
xyl-grown cell culture- 1h 1mM Suc
1 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 1.003 0.097
2 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.803 0.042
3 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.642 0.042
4 259423_at AT1G13880 [ELM2 domain-containing protein] 0.613 0.004
5 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.581 0.022
6 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.580 0.009
7 259549_at AT1G35290 ALT1, acyl-lipid thioesterase 1 0.573 0.099
8 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.567 0.038
9 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.566 -0.014
10 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 0.529 0.006
11 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] 0.524 0.072
12 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 0.521 0.052
13 252650_at AT3G44690 unknown 0.517 0.036
14 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.514 0.033
15 265025_at AT1G24575 unknown 0.502 0.030
16 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor 0.470 0.053
17 249126_at AT5G43380 TOPP6, type one serine/threonine protein phosphatase 6 0.463 0.071
18 263297_at AT2G15310 ARFB1A, ADP-ribosylation factor B1A, ATARFB1A, ADP-ribosylation factor B1A 0.458 0.110
19 246440_at AT5G17650 [glycine/proline-rich protein] 0.447 0.007
20 258880_at AT3G06420 ATG8H, autophagy 8h 0.433 -0.008
21 252133_at AT3G50900 unknown 0.430 0.089
22 255243_at AT4G05590 unknown 0.430 0.091
23 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.429 -0.051
24 255028_at AT4G09890 unknown 0.427 0.097
25 246270_at AT4G36500 unknown 0.423 0.151
26 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.420 0.026
27 245990_at AT5G20640 unknown 0.418 0.031
28 261407_at AT1G18810 [phytochrome kinase substrate-related] 0.413 0.087
29 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.409 0.027
30 258091_at AT3G14560 unknown 0.407 0.197
31 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 0.404 0.070
32 251454_at AT3G60080 [RING/U-box superfamily protein] 0.403 0.019
33 252866_at AT4G39840 unknown 0.402 -0.005
34 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.400 0.084
35 258617_at AT3G03000 [EF hand calcium-binding protein family] 0.395 0.058
36 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 0.391 -0.037
37 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.390 0.022
38 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 0.389 0.018
39 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.385 0.045
40 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.384 0.004
41 261286_at AT1G35780 unknown 0.382 0.010
42 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.382 0.072
43 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 0.377 -0.075
44 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 0.374 0.064
45 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.371 0.045
46 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.368 0.038
47 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.368 -0.014
48 248230_at AT5G53830 [VQ motif-containing protein] 0.367 0.027
49 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 0.366 -0.001
50 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 0.365 0.055
51 263067_at AT2G17550 TRM26, TON1 Recruiting Motif 26 0.362 -0.010
52 246585_at AT5G14750 ATMYB66, myb domain protein 66, MYB66, myb domain protein 66, WER, WEREWOLF, WER1, WEREWOLF 1 0.362 0.020
53 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.360 0.035
54 265769_at AT2G48090 unknown 0.358 0.062
55 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.354 -0.003
56 254201_at AT4G24130 unknown 0.351 -0.010
57 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.351 0.027
58 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.350 0.007
59 254362_at AT4G22160 unknown 0.350 0.055
60 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] 0.348 -0.004
61 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 0.348 0.048
62 259756_at AT1G71080 [RNA polymerase II transcription elongation factor] 0.348 0.038
63 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C 0.344 -0.002
64 252765_at AT3G42800 unknown 0.342 -0.009
65 247656_at AT5G59890 ADF4, actin depolymerizing factor 4, ATADF4 0.341 0.045
66 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.340 0.053
67 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.339 -0.088
68 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.339 0.057
69 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.333 -0.041
70 256596_at AT3G28540 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.331 -0.005
71 258527_at AT3G06850 BCE2, DIN3, DARK INDUCIBLE 3, LTA1 0.331 -0.018
72 264872_at AT1G24260 AGL9, AGAMOUS-like 9, SEP3, SEPALLATA3 0.328 0.011
73 260012_at AT1G67865 unknown 0.327 0.033
74 266325_at AT2G46630 unknown 0.326 0.003
75 256720_at AT2G34140 [Dof-type zinc finger DNA-binding family protein] 0.326 -0.013
76 255854_at AT1G67050 unknown 0.324 -0.033
77 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase 0.324 0.012
78 260004_at AT1G67860 unknown 0.323 -0.022
79 261748_at AT1G76070 unknown 0.323 0.022
80 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 0.323 0.087
81 266175_at AT2G02450 ANAC034, Arabidopsis NAC domain containing protein 34, ANAC035, NAC domain containing protein 35, AtLOV1, LOV1, LONG VEGETATIVE PHASE 1, NAC035, NAC domain containing protein 35 0.322 -0.052
82 247632_at AT5G60460 [Preprotein translocase Sec, Sec61-beta subunit protein] 0.320 -0.005
83 247747_at AT5G59000 [RING/FYVE/PHD zinc finger superfamily protein] 0.319 0.087
84 248967_at AT5G45350 [proline-rich family protein] 0.318 0.030
85 259340_at AT3G03870 unknown 0.318 -0.021
86 254998_at AT4G09760 [Protein kinase superfamily protein] 0.318 -0.008
87 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.316 0.137
88 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.315 -0.105
89 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 0.315 0.045
90 248596_at AT5G49330 ATMYB111, ARABIDOPSIS MYB DOMAIN PROTEIN 111, MYB111, myb domain protein 111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3 0.314 0.046
91 263545_at AT2G21560 unknown 0.307 -0.024
92 249783_at AT5G24270 ATSOS3, SALT OVERLY SENSITIVE 3, CBL4, CALCINEURIN B-LIKE PROTEIN 4, SOS3, SALT OVERLY SENSITIVE 3 0.305 -0.038
93 260783_at AT1G06160 ORA59, octadecanoid-responsive Arabidopsis AP2/ERF 59 0.304 -0.018
94 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 0.302 -0.006
95 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.300 0.036
96 256731_at AT3G30340 UMAMIT32, Usually multiple acids move in and out Transporters 32 0.300 0.017
97 266393_at AT2G41260 ATM17, M17 -1.046 -0.014
98 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.975 0.055
99 244981_at ATCG00770 RPS8, ribosomal protein S8 -0.873 -0.285
100 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 -0.859 0.112
101 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.846 0.053
102 244966_at ATCG00600 PETG -0.836 -0.439
103 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.831 0.111
104 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.810 -0.374
105 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.770 -0.052
106 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 -0.762 0.030
107 250868_at AT5G03860 MLS, malate synthase -0.735 0.035
108 264612_at AT1G04560 [AWPM-19-like family protein] -0.729 -0.043
109 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 -0.723 0.036
110 250624_at AT5G07330 unknown -0.720 0.007
111 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.709 -0.139
112 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.708 -0.163
113 251838_at AT3G54940 [Papain family cysteine protease] -0.683 0.106
114 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.671 -0.018
115 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.670 0.026
116 264079_at AT2G28490 [RmlC-like cupins superfamily protein] -0.665 0.140
117 247297_at AT5G64100 [Peroxidase superfamily protein] -0.661 0.009
118 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.648 -0.077
119 245008_at ATCG00360 YCF3 -0.647 -0.282
120 256814_at AT3G21370 BGLU19, beta glucosidase 19 -0.638 0.000
121 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 -0.632 0.028
122 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.630 -0.010
123 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] -0.617 0.027
124 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.613 0.049
125 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related -0.606 0.035
126 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.588 0.093
127 266143_at AT2G38905 [Low temperature and salt responsive protein family] -0.584 0.059
128 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 -0.568 0.009
129 256338_at AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.560 0.041
130 245017_at ATCG00510 PSAI, photsystem I subunit I -0.532 -0.148
131 244995_at ATCG00150 ATPI -0.527 0.030
132 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.526 0.039
133 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.519 0.039
134 257334_at ATMG01370 ORF111D -0.517 -0.008
135 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.517 0.053
136 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.517 -0.044
137 244963_at ATCG00570 PSBF, photosystem II reaction center protein F -0.512 0.051
138 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.508 -0.061
139 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.501 -0.023
140 260890_at AT1G29090 [Cysteine proteinases superfamily protein] -0.499 0.015
141 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.497 0.035
142 245070_at AT2G23240 AtMT4b, Arabidopsis thaliana metallothionein 4b -0.480 0.026
143 266941_at AT2G18980 [Peroxidase superfamily protein] -0.475 -0.061
144 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.475 -0.365
145 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 -0.469 0.071
146 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.463 -0.045
147 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.461 0.035
148 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.460 -0.000
149 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] -0.457 0.056
150 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 -0.454 0.050
151 260077_at AT1G73620 [Pathogenesis-related thaumatin superfamily protein] -0.453 0.024
152 245022_at ATCG00560 PSBL, photosystem II reaction center protein L -0.453 0.052
153 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.440 -0.166
154 253392_at AT4G32650 ATKC1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, AtLKT1, A. thaliana low-K+-tolerant 1, KAT3, potassium channel in Arabidopsis thaliana 3, KC1 -0.435 -0.073
155 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.434 0.070
156 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.434 0.033
157 244936_at ATCG01100 NDHA -0.432 0.072
158 251531_at AT3G58550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.429 0.008
159 245018_at ATCG00520 YCF4 -0.427 -0.015
160 250059_at AT5G17820 [Peroxidase superfamily protein] -0.427 -0.001
161 247362_at AT5G63140 ATPAP29, purple acid phosphatase 29, PAP29, PAP29, purple acid phosphatase 29 -0.422 0.000
162 257947_at AT3G21720 ICL, isocitrate lyase -0.421 0.004
163 262605_at AT1G15170 [MATE efflux family protein] -0.418 0.005
164 252989_at AT4G38420 sks9, SKU5 similar 9 -0.409 0.008
165 245026_at ATCG00140 ATPH -0.405 -0.263
166 247061_at AT5G66780 unknown -0.398 0.022
167 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 -0.394 -0.004
168 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.392 -0.168
169 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.387 0.044
170 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.386 0.051
171 259615_at AT1G47980 unknown -0.384 0.037
172 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.383 0.093
173 251065_at AT5G01870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.381 0.011
174 254543_at AT4G19810 ChiC, class V chitinase -0.377 0.077
175 249006_at AT5G44660 unknown -0.367 0.015
176 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 -0.366 0.038
177 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.360 -0.054
178 255048_at AT4G09600 GASA3, GAST1 protein homolog 3 -0.360 0.060
179 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 -0.359 0.010
180 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.353 -0.601
181 258424_at AT3G16750 unknown -0.352 0.008
182 256734_at AT3G29390 RIK, RS2-interacting KH protein -0.352 0.030
183 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.351 0.051
184 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta -0.351 -0.103
185 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.350 -0.013
186 253971_at AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 -0.347 0.029
187 256792_at AT3G22150 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.343 0.062
188 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.340 0.003
189 244962_at ATCG01050 NDHD -0.334 0.051
190 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 -0.332 -0.009
191 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.332 0.040