4.0:Information of module
roottip hypoxia total
In comparison with root callus inducing medium 12 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 4.886e-21
GO:1901700 response to oxygen-containing compound BP 2.019e-18
GO:0071229 cellular response to acid chemical BP 6.856e-18
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010015 root morphogenesis BP 2.699e-17
GO:0010054 trichoblast differentiation BP 1.190e-16
GO:0010053 root epidermal cell differentiation BP 3.197e-16
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
roottip hypoxia total		 Log2 signal ratio
root callus inducing medium 12 h
1 250464_at AT5G10040 unknown 1.609 -0.783
2 255807_at AT4G10270 [Wound-responsive family protein] 1.514 -0.447
3 260668_at AT1G19530 unknown 1.378 -0.246
4 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 1.214 -0.335
5 254200_at AT4G24110 unknown 1.160 -0.420
6 259879_at AT1G76650 CML38, calmodulin-like 38 1.128 -0.532
7 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 1.105 -0.262
8 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 1.070 -0.133
9 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 1.047 -0.597
10 247431_at AT5G62520 SRO5, similar to RCD one 5 1.027 -0.238
11 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 1.026 -0.539
12 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.968 -0.914
13 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.967 -0.308
14 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 0.960 -0.736
15 257925_at AT3G23170 unknown 0.948 -0.584
16 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.935 -0.249
17 255568_at AT4G01250 AtWRKY22, WRKY22 0.932 -0.464
18 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 0.887 -0.363
19 250152_at AT5G15120 unknown 0.852 -0.148
20 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 0.822 -0.427
21 249575_at AT5G37670 [HSP20-like chaperones superfamily protein] 0.821 -0.234
22 261475_at AT1G14550 [Peroxidase superfamily protein] 0.784 -0.144
23 254300_at AT4G22780 ACR7, ACT domain repeat 7 0.784 -0.259
24 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.759 0.141
25 245076_at AT2G23170 GH3.3 0.757 0.583
26 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.754 -0.226
27 261567_at AT1G33055 unknown 0.754 -0.375
28 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.736 0.139
29 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.729 -0.156
30 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.718 -0.364
31 252882_at AT4G39675 unknown 0.712 -0.161
32 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.690 -0.483
33 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.678 -0.692
34 253722_at AT4G29190 AtC3H49, AtOZF2, Arabidopsis thaliana oxidation-related zinc finger 2, AtTZF3, OZF2, oxidation-related zinc finger 2, TZF3, tandem zinc finger 3 0.670 -0.154
35 258377_at AT3G17690 ATCNGC19, CYCLIC NUCLEOTIDE-GATED CHANNEL 19, CNGC19, cyclic nucleotide gated channel 19 0.669 -0.569
36 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.668 -0.478
37 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.622 -0.273
38 257922_at AT3G23150 ETR2, ethylene response 2 0.569 -0.129
39 261261_at AT1G26730 [EXS (ERD1/XPR1/SYG1) family protein] 0.566 -0.366
40 248177_at AT5G54630 [zinc finger protein-related] 0.563 -0.053
41 265501_at AT2G15490 UGT73B4, UDP-glycosyltransferase 73B4 0.556 -0.027
42 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.555 -0.143
43 264561_at AT1G55810 UKL3, uridine kinase-like 3 0.550 -0.005
44 249234_at AT5G42200 [RING/U-box superfamily protein] 0.548 -0.795
45 263931_at AT2G36220 unknown 0.541 -0.210
46 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.531 -0.303
47 264788_at AT2G17880 DJC24, DNA J protein C24 0.524 -0.638
48 259685_at AT1G63090 AtPP2-A11, phloem protein 2-A11, PP2-A11, phloem protein 2-A11 0.515 -0.238
49 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.508 -0.156
50 247868_at AT5G57620 AtMYB36, myb domain protein 36, MYB36, myb domain protein 36 0.498 -0.224
51 252046_at AT3G52460 [hydroxyproline-rich glycoprotein family protein] 0.497 0.109
52 253404_at AT4G32840 PFK6, phosphofructokinase 6 0.496 -0.192
53 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.491 -0.411
54 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.486 -0.210
55 266016_at AT2G18670 [RING/U-box superfamily protein] 0.484 -0.299
56 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.751 0.295
57 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.694 -0.748
58 258832_at AT3G07070 [Protein kinase superfamily protein] -0.652 0.186
59 256138_at AT1G48670 [auxin-responsive GH3 family protein] -0.579 -0.008
60 259195_at AT3G01730 unknown -0.538 0.283
61 253763_at AT4G28850 ATXTH26, XTH26, xyloglucan endotransglucosylase/hydrolase 26 -0.534 -0.031
62 261647_at AT1G27740 RSL4, root hair defective 6-like 4 -0.514 0.319
63 261157_at AT1G34510 [Peroxidase superfamily protein] -0.513 0.611
64 255591_at AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 -0.498 0.179
65 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 -0.496 0.306
66 263376_at AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 -0.479 0.266
67 263932_at AT2G35990 LOG2, LONELY GUY 2 -0.455 -0.013
68 249750_at AT5G24570 unknown -0.447 0.173
69 261241_at AT1G32950 [Subtilase family protein] -0.438 0.084
70 259982_at AT1G76410 ATL8 -0.430 0.316
71 265213_at AT1G05020 [ENTH/ANTH/VHS superfamily protein] -0.425 -0.003
72 264892_at AT1G23160 [Auxin-responsive GH3 family protein] -0.422 -0.674
73 260300_at AT1G80340 ATGA3OX2, ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, GA3OX2, gibberellin 3-oxidase 2, GA4H -0.383 0.013
74 252238_at AT3G49960 [Peroxidase superfamily protein] -0.368 0.320
75 259525_at AT1G12560 ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7, EXPA7, expansin A7 -0.358 0.522
76 247871_at AT5G57530 AtXTH12, XTH12, xyloglucan endotransglucosylase/hydrolase 12 -0.342 0.437
77 265411_at AT2G16630 [Pollen Ole e 1 allergen and extensin family protein] -0.340 0.261
78 255175_at AT4G07960 ATCSLC12, Cellulose-synthase-like C12, CSLC12, CELLULOSE-SYNTHASE LIKE C12, CSLC12, Cellulose-synthase-like C12 -0.338 0.107
79 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] -0.337 0.242
80 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE -0.337 0.345
81 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.335 -0.125
82 265844_at AT2G35620 FEI2, FEI 2 -0.334 0.160
83 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 -0.328 -0.115
84 252594_at AT3G45680 [Major facilitator superfamily protein] -0.327 -0.175
85 265039_at AT1G04000 unknown -0.326 -0.023
86 253723_at AT4G29240 [Leucine-rich repeat (LRR) family protein] -0.323 -0.024
87 247498_at AT5G61810 APC1, ATP/phosphate carrier 1 -0.314 -0.066
88 267550_at AT2G32800 AP4.3A, LecRK-S.2, L-type lectin receptor kinase S.2 -0.313 0.189
89 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.312 0.052
90 249934_at AT5G22410 RHS18, root hair specific 18 -0.311 0.507
91 257297_at AT3G28040 [Leucine-rich receptor-like protein kinase family protein] -0.310 0.141
92 265102_at AT1G30870 [Peroxidase superfamily protein] -0.310 0.396
93 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 -0.310 0.575
94 257131_at AT3G20240 [Mitochondrial substrate carrier family protein] -0.303 0.405
95 262275_at AT1G68710 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] -0.295 0.142
96 258967_at AT3G10470 [C2H2-type zinc finger family protein] -0.290 -0.059
97 259846_at AT1G72140 [Major facilitator superfamily protein] -0.288 0.291
98 253100_at AT4G37400 CYP81F3, cytochrome P450, family 81, subfamily F, polypeptide 3 -0.286 0.037
99 251513_at AT3G59220 ATPIRIN1, PRN, pirin, PRN1 -0.285 0.516
100 261587_at AT1G01660 [RING/U-box superfamily protein] -0.285 0.006
101 256759_at AT3G25640 unknown -0.284 0.563
102 246991_at AT5G67400 RHS19, root hair specific 19 -0.282 0.423
103 255516_at AT4G02270 RHS13, root hair specific 13 -0.279 0.231
104 253734_at AT4G29180 RHS16, root hair specific 16 -0.265 0.072
105 261758_at AT1G08250 ADT6, arogenate dehydratase 6, AtADT6, Arabidopsis thaliana arogenate dehydratase 6 -0.262 0.380
106 250744_at AT5G05840 unknown -0.260 0.103
107 263236_at AT1G10470 ARR4, response regulator 4, ATRR1, RESPONCE REGULATOR 1, IBC7, INDUCED BY CYTOKININ 7, MEE7, maternal effect embryo arrest 7 -0.256 0.211
108 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 -0.250 0.239
109 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor -0.249 0.274