4.0:Information of module
roottip hypoxia pWOL
In comparison with Col BTH help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010467 gene expression BP 1.667e-05
GO:0016458 gene silencing BP 5.553e-05
GO:0010468 regulation of gene expression BP 5.985e-05
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006412 translation BP 6.577e-08
GO:0009853 photorespiration BP 3.824e-07
GO:0043094 cellular metabolic compound salvage BP 1.830e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
roottip hypoxia pWOL		 Log2 signal ratio
Col BTH
1 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] 0.918 -0.052
2 247959_at AT5G57080 unknown 0.822 -0.040
3 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] 0.812 0.020
4 261873_at AT1G11350 CBRLK1, CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, RKS2, SD1-13, S-domain-1 13 0.808 0.017
5 264145_at AT1G79310 AtMC7, metacaspase 7, AtMCP2a, metacaspase 2a, MC7, metacaspase 7, MCP2a, metacaspase 2a 0.798 -0.038
6 252078_at AT3G51740 IMK2, inflorescence meristem receptor-like kinase 2 0.767 0.080
7 253864_at AT4G27460 CBSX5, CBS domain containing protein 5 0.695 0.095
8 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.582 -0.023
9 258255_at AT3G26800 unknown 0.580 -0.062
10 245079_at AT2G23330 [copia-like retrotransposon family, has a 3.9e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] 0.567 -0.059
11 260565_at AT2G43800 [Actin-binding FH2 (formin homology 2) family protein] 0.563 -0.063
12 252905_at AT4G39720 [VQ motif-containing protein] 0.559 0.002
13 263002_at AT1G54200 unknown 0.546 -0.059
14 254207_at AT4G24060 [Dof-type zinc finger DNA-binding family protein] 0.541 0.078
15 261545_at AT1G63530 unknown 0.516 -0.011
16 266917_at AT2G45830 DTA2, downstream target of AGL15 2 0.515 -0.035
17 246620_at AT5G36220 CYP81D1, cytochrome P450, family 81, subfamily D, polypeptide 1, CYP91A1, CYTOCHROME P450 91A1 0.506 -0.026
18 255893_at AT1G17960 [Threonyl-tRNA synthetase] 0.494 0.013
19 267015_at AT2G39340 AtSAC3A, SAC3A, yeast Sac3 homolog A 0.490 0.072
20 260646_at AT1G53340 [Cysteine/Histidine-rich C1 domain family protein] 0.463 -0.007
21 253571_at AT4G31000 [Calmodulin-binding protein] 0.456 0.139
22 259952_at AT1G71400 AtRLP12, receptor like protein 12, RLP12, receptor like protein 12 0.453 0.071
23 255667_at AT4G00240 PLDBETA2, phospholipase D beta 2 0.451 0.040
24 260307_at AT1G70620 [cyclin-related] 0.447 0.069
25 258392_at AT3G15400 ATA20, anther 20 0.443 -0.113
26 251051_at AT5G02460 [Dof-type zinc finger DNA-binding family protein] 0.436 -0.074
27 263998_at AT2G22510 [hydroxyproline-rich glycoprotein family protein] 0.432 0.037
28 250415_at AT5G11210 ATGLR2.5, ARABIDOPSIS THALIANA GLU, GLR2.5, glutamate receptor 2.5 0.431 0.107
29 259175_at AT3G01560 unknown 0.428 0.078
30 258833_at AT3G07274 0.425 0.111
31 261615_at AT1G33050 unknown 0.425 0.071
32 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.419 0.082
33 245758_at AT1G32240 KAN2, KANADI 2 0.409 -0.035
34 257185_at AT3G13100 ABCC7, ATP-binding cassette C7, ATMRP7, multidrug resistance-associated protein 7, MRP7, MRP7, multidrug resistance-associated protein 7 0.402 0.227
35 253819_at AT4G28350 LecRK-VII.2, L-type lectin receptor kinase VII.2 0.394 -0.149
36 246261_at AT1G31810 AFH14, Formin Homology 14 0.380 0.021
37 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 0.380 0.053
38 264459_at AT1G10160 [non-LTR retrotransposon family (LINE), has a 3.9e-39 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus)] 0.374 0.066
39 256493_at AT1G31600 AtTRM9, Arabidopsis thaliana tRNA methyltransferase 9, TRM9, tRNA methyltransferase 9 0.371 0.080
40 251347_at AT3G61010 [Ferritin/ribonucleotide reductase-like family protein] 0.362 0.108
41 258761_at AT3G10760 [Homeodomain-like superfamily protein] 0.359 -0.031
42 252971_at AT4G38770 ATPRP4, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, PRP4, proline-rich protein 4 0.359 -0.076
43 247121_at AT5G66010 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.355 0.063
44 260054_at AT1G78130 UNE2, unfertilized embryo sac 2 0.353 0.045
45 251968_at AT3G53100 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.352 -0.114
46 259686_at AT1G63100 [GRAS family transcription factor] 0.349 0.128
47 261050_at AT1G01260 JAM2, Jasmonate Associated MYC2 LIKE 2 0.347 -0.007
48 262538_at AT1G17140 ICR1, interactor of constitutive active rops 1, RIP1, ROP INTERACTIVE PARTNER 1 0.346 0.023
49 247230_at AT5G65170 [VQ motif-containing protein] 0.345 -0.048
50 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 0.344 0.011
51 256576_at AT3G28210 PMZ, SAP12, STRESS-ASSOCIATED PROTEIN 12 0.340 0.053
52 266785_at AT2G28970 [Leucine-rich repeat protein kinase family protein] 0.340 0.006
53 257036_at AT3G19120 [PIF / Ping-Pong family of plant transposases] 0.334 0.036
54 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] 0.332 0.086
55 245208_at AT5G12330 LRP1, LATERAL ROOT PRIMORDIUM 1 0.329 0.002
56 262204_at AT2G01100 unknown 0.327 0.101
57 248868_at AT5G46780 [VQ motif-containing protein] 0.326 0.049
58 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 0.318 -0.128
59 250487_at AT5G09690 ATMGT7, ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, MGT7, magnesium transporter 7, MRS2-7 0.316 0.084
60 262701_at AT1G16480 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.314 -0.101
61 267075_at AT2G41070 ATBZIP12, DPBF4, EEL, ENHANCED EM LEVEL 0.313 0.073
62 248106_at AT5G55100 [SWAP (Suppressor-of-White-APricot)/surp domain-containing protein] 0.306 0.138
63 265733_at AT2G01190 PDE331, PIGMENT DEFECTIVE 331 0.306 0.094
64 253597_at AT4G30690 [Translation initiation factor 3 protein] 0.305 -0.040
65 262135_at AT1G78080 AtWIND1, RAP2.4, related to AP2 4, WIND1, wound induced dedifferentiation 1 0.304 -0.074
66 259666_at AT1G55310 At-SCL33, SC35-LIKE SPLICING FACTOR 33, ATSCL33, SC35-like splicing factor 33, SCL33, SC35-LIKE SPLICING FACTOR 33, SR33, SC35-like splicing factor 33 0.303 0.075
67 254976_at AT4G10510 [Subtilase family protein] 0.302 -0.052
68 253399_at AT4G32850 nPAP, nuclear poly(a) polymerase, PAP(IV), poly(A) polymerase IV, PAPS4, poly(A) polymerase 4 0.302 0.014
69 249995_at AT5G18610 [Protein kinase superfamily protein] 0.300 0.022
70 257073_at AT3G19650 [cyclin-related] 0.298 0.024
71 265902_at AT2G25590 [Plant Tudor-like protein] 0.297 0.220
72 256244_at AT3G12520 SULTR4;2, sulfate transporter 4;2 0.296 -0.089
73 247578_at AT5G61300 unknown 0.294 -0.034
74 261518_at AT1G71695 [Peroxidase superfamily protein] 0.293 -0.088
75 248301_at AT5G53150 [DNAJ heat shock N-terminal domain-containing protein] 0.292 0.021
76 253133_at AT4G35800 NRPB1, RNA polymerase II large subunit, RNA_POL_II_LS, RNA POLYMERASE II LARGE SUBUNIT, RNA_POL_II_LSRNA_POL_II_LS, RPB1, RNA POLYMERASE II LARGE SUBUNIT 0.291 0.026
77 254491_at AT4G20300 unknown 0.290 -0.016
78 248081_at AT5G55390 EDM2, ENHANCED DOWNY MILDEW 2 0.290 0.006
79 257132_at AT3G20230 [Ribosomal L18p/L5e family protein] 0.287 -0.052
80 250457_at AT5G09880 [Splicing factor, CC1-like] 0.284 0.067
81 247904_at AT5G57390 AIL5, AINTEGUMENTA-like 5, CHO1, CHOTTO 1, EMK, EMBRYOMAKER, PLT5, PLETHORA 5 0.278 -0.022
82 253565_at AT4G31200 [SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein] 0.276 -0.016
83 259232_at AT3G11420 unknown 0.276 -0.008
84 254429_at AT4G21105 [cytochrome-c oxidases] -0.817 0.031
85 250157_at AT5G15180 [Peroxidase superfamily protein] -0.735 -0.012
86 251447_at AT3G59810 LSM6A, SM-like 6A -0.702 0.044
87 253482_at AT4G31985 [Ribosomal protein L39 family protein] -0.666 0.002
88 245386_at AT4G14010 RALFL32, ralf-like 32 -0.582 -0.054
89 258747_at AT3G05810 unknown -0.573 -0.038
90 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.564 0.001
91 254162_at AT4G24440 [transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)] -0.563 0.009
92 261232_at AT1G20220 [Alba DNA/RNA-binding protein] -0.552 -0.012
93 249575_at AT5G37670 [HSP20-like chaperones superfamily protein] -0.537 0.159
94 267239_at AT2G02510 [NADH dehydrogenase (ubiquinone)s] -0.511 0.021
95 251483_at AT3G59650 [mitochondrial ribosomal protein L51/S25/CI-B8 family protein] -0.508 -0.090
96 250314_at AT5G12190 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.502 0.028
97 261221_at AT1G19960 unknown -0.502 -0.065
98 259120_at AT3G02240 GLV4, GOLVEN 4, RGF7, root meristem growth factor 7 -0.499 0.007
99 263182_at AT1G05575 unknown -0.489 0.052
100 246442_at AT5G17610 unknown -0.479 0.011
101 251240_at AT3G62450 unknown -0.477 0.047
102 247893_at AT5G57980 RPB5C, RNA polymerase II fifth largest subunit, C -0.468 -0.038
103 263585_at AT2G25210 [Ribosomal protein L39 family protein] -0.467 -0.026
104 250924_at AT5G03440 unknown -0.461 0.053
105 249335_at AT5G41010 NRPB12, NRPD12, NRPE12 -0.451 0.020
106 255968_at AT1G22270 [Trm112p-like protein] -0.444 -0.024
107 254644_at AT4G18510 CLE2, CLAVATA3/ESR-related 2 -0.429 0.021
108 266579_at AT2G23930 SNRNP-G, probable small nuclear ribonucleoprotein G -0.428 0.009
109 265006_at AT1G61570 TIM13, translocase of the inner mitochondrial membrane 13 -0.427 0.043
110 245305_at AT4G17215 [Pollen Ole e 1 allergen and extensin family protein] -0.425 -0.094
111 255011_at AT4G10040 CYTC-2, cytochrome c-2 -0.421 -0.044
112 266806_at AT2G30000 [PHF5-like protein] -0.419 -0.001
113 246842_at AT5G26731 unknown -0.413 0.250
114 250800_at AT5G05370 [Cytochrome b-c1 complex, subunit 8 protein] -0.412 0.014
115 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 -0.408 0.033
116 250922_at AT5G03345 unknown -0.405 -0.021
117 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B -0.400 -0.067
118 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] -0.394 -0.020
119 251210_at AT3G62810 [complex 1 family protein / LVR family protein] -0.393 -0.015
120 254216_at AT4G23710 VAG2, vacuolar ATP synthase subunit G2, VATG2, VACUOLAR ATP SYNTHASE SUBUNIT G2, VHA-G2 -0.392 0.042
121 255037_at AT4G09460 AtMYB6, myb domain protein 6, MYB6, myb domain protein 6 -0.391 0.120
122 250676_at AT5G06320 NHL3, NDR1/HIN1-like 3 -0.390 -0.017
123 246479_at AT5G16060 [Cytochrome c oxidase biogenesis protein Cmc1-like] -0.389 -0.001
124 259675_at AT1G77710 AtCCP2, CCP2, conserved in ciliated species and in the land plants 2 -0.389 0.033
125 253291_at AT4G33865 [Ribosomal protein S14p/S29e family protein] -0.383 0.007
126 251640_at AT3G57450 unknown -0.383 0.005
127 251355_at AT3G61100 [Putative endonuclease or glycosyl hydrolase] -0.383 -0.033
128 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 -0.381 -0.193
129 250165_at AT5G15290 CASP5, Casparian strip membrane domain protein 5 -0.379 -0.024
130 248889_at AT5G46230 unknown -0.379 0.317
131 260009_at AT1G67950 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.373 -0.065
132 262415_at AT1G49400 emb1129, embryo defective 1129 -0.373 -0.030
133 250079_at AT5G16650 [Chaperone DnaJ-domain superfamily protein] -0.367 -0.012
134 249729_at AT5G24410 PGL4, 6-phosphogluconolactonase 4 -0.367 -0.017
135 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B -0.367 -0.023
136 259678_at AT1G77750 [Ribosomal protein S13/S18 family] -0.363 -0.019
137 249838_at AT5G23460 unknown -0.361 -0.037
138 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.360 -0.135
139 251281_at AT3G61640 AGP20, arabinogalactan protein 20, AtAGP20, Arabinogalactan protein 20 -0.360 0.136
140 249943_at AT5G22280 unknown -0.359 0.064
141 259592_at AT1G27950 LTPG1, glycosylphosphatidylinositol-anchored lipid protein transfer 1 -0.358 -0.060
142 266191_at AT2G39040 [Peroxidase superfamily protein] -0.357 -0.038
143 256926_at AT3G22540 unknown -0.354 -0.011
144 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] -0.354 0.008
145 266613_at AT2G14900 [Gibberellin-regulated family protein] -0.351 -0.002
146 249014_at AT5G44710 unknown -0.350 -0.008
147 246631_at AT1G50740 [Transmembrane proteins 14C] -0.349 0.053
148 265451_at AT2G46490 unknown -0.347 -0.025
149 264926_at AT1G60660 ATCB5LP, ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, B5 #5, CB5LP, cytochrome B5-like protein -0.347 -0.021
150 245894_at AT5G09310 unknown -0.346 0.012
151 258297_at AT3G23325 [Splicing factor 3B subunit 5/RDS3 complex subunit 10] -0.345 0.005
152 246746_at AT5G27820 [Ribosomal L18p/L5e family protein] -0.342 -0.093
153 265134_at AT1G51260 LPAT3, lysophosphatidyl acyltransferase 3 -0.341 -0.034
154 245303_at AT4G17010 unknown -0.341 0.039
155 259774_at AT1G29520 [AWPM-19-like family protein] -0.335 -0.149
156 252676_at AT3G44280 unknown -0.329 0.013
157 249473_at AT5G39340 AHP3, histidine-containing phosphotransmitter 3, ATHP2, ARABIDOPSIS THALIANA HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2 -0.329 -0.013
158 265663_at AT2G24290 unknown -0.327 -0.057
159 259225_at AT3G07590 [Small nuclear ribonucleoprotein family protein] -0.321 0.079
160 265354_at AT2G16700 ADF5, actin depolymerizing factor 5, ATADF5 -0.321 0.198
161 260538_at AT2G43460 [Ribosomal L38e protein family] -0.320 -0.012
162 258937_at AT3G10090 [Nucleic acid-binding, OB-fold-like protein] -0.317 0.014
163 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] -0.313 0.370
164 256838_at AT3G22950 ARFC1, ADP-ribosylation factor C1, ATARFC1, ADP-ribosylation factor C1 -0.313 0.023
165 259933_at AT1G34350 unknown -0.310 -0.026