4.0:Information of module
roottip hypoxia pSCR
In comparison with cat2-2; 8h switch to ambient CO2 concentrations; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0016458 gene silencing BP 2.751e-07
GO:0044270 cellular nitrogen compound catabolic pro... BP 4.509e-07
GO:0051276 chromosome organization BP 5.565e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006810 transport BP 3.022e-03
GO:0006694 steroid biosynthetic process BP 3.580e-03
GO:0046165 alcohol biosynthetic process BP 3.981e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
roottip hypoxia pSCR		 Log2 signal ratio
cat2-2; 8h switch to ambient CO2 concentrations;
1 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.520 0.384
2 247685_at AT5G59680 [Leucine-rich repeat protein kinase family protein] 0.426 0.139
3 261052_at AT1G01440 unknown 0.389 0.009
4 247567_at AT5G61190 [putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain] 0.349 0.099
5 246765_at AT5G27330 [Prefoldin chaperone subunit family protein] 0.347 0.006
6 266627_at AT2G35340 MEE29, maternal effect embryo arrest 29 0.342 0.072
7 256176_at AT1G51640 ATEXO70G2, exocyst subunit exo70 family protein G2, EXO70G2, exocyst subunit exo70 family protein G2 0.336 0.025
8 262668_at AT1G62830 ATLSD1, ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATSWP1, LDL1, LSD1-like 1, LSD1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1 0.329 -0.005
9 265864_at AT2G01750 ATMAP70-3, microtubule-associated proteins 70-3, MAP70-3, microtubule-associated proteins 70-3 0.318 0.117
10 261333_at AT1G44910 ATPRP40A, pre-mRNA-processing protein 40A, PRP40A, pre-mRNA-processing protein 40A 0.318 0.126
11 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 0.317 0.061
12 251876_at AT3G54280 ATBTAF1, BTAF1, CHA16, CHR16, RGD3, ROOT GROWTH DEFECTIVE 3 0.315 0.069
13 256754_at AT3G25690 AtCHUP1, Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, CHUP1, CHLOROPLAST UNUSUAL POSITIONING 1 0.310 0.041
14 252639_at AT3G44550 FAR5, fatty acid reductase 5 0.308 0.008
15 249219_at AT5G42400 ATXR7, ARABIDOPSIS TRITHORAX-RELATED7, SDG25, SET domain protein 25 0.295 0.072
16 252047_at AT3G52490 SMXL3, SMAX1-like 3 0.289 -0.022
17 245166_at AT2G33170 [Leucine-rich repeat receptor-like protein kinase family protein] 0.286 -0.004
18 252395_at AT3G47950 AHA4, H(+)-ATPase 4, HA4, H(+)-ATPase 4 0.282 0.001
19 253571_at AT4G31000 [Calmodulin-binding protein] 0.282 0.048
20 248778_at AT5G47940 unknown 0.273 0.103
21 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.269 0.039
22 245588_at AT4G15030 unknown 0.268 0.109
23 249409_at AT5G40340 [Tudor/PWWP/MBT superfamily protein] 0.262 0.122
24 258585_at AT3G04340 emb2458, embryo defective 2458 0.257 0.026
25 262614_at AT1G13980 EMB30, EMBRYO DEFECTIVE 30, GN, GNOM, VAN7, VASCULAR NETWORK 7 0.254 0.096
26 249115_at AT5G43810 AGO10, ARGONAUTE 10, PNH, PINHEAD, ZLL, ZWILLE 0.247 0.022
27 267015_at AT2G39340 AtSAC3A, SAC3A, yeast Sac3 homolog A 0.246 0.148
28 264283_at AT1G61850 [phospholipases] 0.246 0.064
29 258098_at AT3G23670 KINESIN-12B, PAKRP1L 0.245 0.090
30 256426_at AT1G33420 [RING/FYVE/PHD zinc finger superfamily protein] 0.244 -0.006
31 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 0.239 0.070
32 248266_at AT5G53440 unknown 0.239 0.077
33 248570_at AT5G49780 [Leucine-rich repeat protein kinase family protein] 0.235 0.034
34 262956_at AT1G54270 EIF4A-2, eif4a-2 0.234 0.038
35 261616_at AT1G33060 ANAC014, NAC 014, NAC014, NAC 014 0.233 0.042
36 251970_at AT3G53150 UGT73D1, UDP-glucosyl transferase 73D1 0.232 0.150
37 245575_at AT4G14760 NET1B, Networked 1B 0.232 0.133
38 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.228 -0.005
39 261862_at AT1G50410 [SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related] 0.227 0.083
40 256864_at AT3G23890 ATTOPII, TOPII, topoisomerase II 0.226 0.067
41 257285_at AT3G29760 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.226 0.094
42 258833_at AT3G07274 0.221 0.065
43 256282_at AT3G12550 FDM3, factor of DNA methylation 3 0.219 0.101
44 247070_at AT5G66815 unknown -0.814 -0.006
45 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.620 -0.076
46 262795_at AT1G13130 [Cellulase (glycosyl hydrolase family 5) protein] -0.590 0.050
47 252046_at AT3G52460 [hydroxyproline-rich glycoprotein family protein] -0.532 -0.016
48 246125_at AT5G19875 unknown -0.520 -0.064
49 265463_at AT2G37090 IRX9, IRREGULAR XYLEM 9 -0.485 0.014
50 257054_at AT3G15353 ATMT3, MT3, metallothionein 3 -0.473 -0.034
51 260389_at AT1G74055 unknown -0.454 -0.020
52 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 -0.436 0.169
53 261256_at AT1G05760 RTM1, restricted tev movement 1 -0.417 -0.053
54 263689_at AT1G26820 RNS3, ribonuclease 3 -0.414 0.033
55 261019_at AT1G26470 SNS1, SnRK2-substrate 1 -0.403 -0.074
56 254168_at AT4G24250 ATMLO13, MILDEW RESISTANCE LOCUS O 13, MLO13, MILDEW RESISTANCE LOCUS O 13 -0.369 0.005
57 261317_at AT1G53030 [Cytochrome C oxidase copper chaperone (COX17)] -0.358 -0.075
58 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor -0.355 0.006
59 264573_at AT1G05310 [Pectin lyase-like superfamily protein] -0.352 0.018
60 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] -0.347 -0.023
61 264288_at AT1G62045 unknown -0.338 0.076
62 249970_at AT5G19100 [Eukaryotic aspartyl protease family protein] -0.325 -0.073
63 263211_at AT1G10460 GLP7, germin-like protein 7 -0.322 -0.013
64 255011_at AT4G10040 CYTC-2, cytochrome c-2 -0.316 0.051
65 253112_at AT4G35970 APX5, ascorbate peroxidase 5 -0.302 -0.046
66 257093_at AT3G20570 AtENODL9, ENODL9, early nodulin-like protein 9 -0.300 0.017
67 249214_at AT5G42720 [Glycosyl hydrolase family 17 protein] -0.297 -0.058
68 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 -0.297 -0.036
69 249958_at AT5G18970 [AWPM-19-like family protein] -0.294 -0.033
70 247882_at AT5G57785 unknown -0.294 0.007
71 250922_at AT5G03345 unknown -0.288 -0.037
72 246442_at AT5G17610 unknown -0.281 -0.083
73 259852_at AT1G72280 AERO1, endoplasmic reticulum oxidoreductins 1, ERO1, endoplasmic reticulum oxidoreductins 1 -0.281 0.044
74 265663_at AT2G24290 unknown -0.279 -0.087
75 262315_at AT1G70990 [proline-rich family protein] -0.279 -0.077
76 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.272 -0.162
77 246744_at AT5G27760 [Hypoxia-responsive family protein] -0.271 0.029
78 263800_at AT2G24600 [Ankyrin repeat family protein] -0.264 0.013
79 258866_at AT3G03180 [Got1/Sft2-like vescicle transport protein family] -0.262 -0.067
80 254187_at AT4G23890 CRR31, CHLORORESPIRATORY REDUCTION 31, NdhS, NADH dehydrogenase-like complex S -0.262 -0.013
81 255104_at AT4G08685 SAH7 -0.258 -0.051
82 248967_at AT5G45350 [proline-rich family protein] -0.253 -0.057
83 256424_at AT1G33490 unknown -0.249 -0.015
84 250079_at AT5G16650 [Chaperone DnaJ-domain superfamily protein] -0.247 -0.049
85 266783_at AT2G29130 ATLAC2, LAC2, laccase 2 -0.246 0.012