4.0:Information of module
roottip control pWOL
In comparison with ptpks2 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0000398 mRNA splicing, via spliceosome BP 3.011e-05
GO:0008380 RNA splicing BP 9.355e-05
GO:0000375 RNA splicing, via transesterification re... BP 1.098e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006006 glucose metabolic process BP 3.247e-15
GO:0019318 hexose metabolic process BP 1.419e-14
GO:0006094 gluconeogenesis BP 2.982e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
roottip control pWOL		 Log2 signal ratio
ptpks2
1 245845_at AT1G26150 AtPERK10, proline-rich extensin-like receptor kinase 10, PERK10, proline-rich extensin-like receptor kinase 10 1.142 0.067
2 264145_at AT1G79310 AtMC7, metacaspase 7, AtMCP2a, metacaspase 2a, MC7, metacaspase 7, MCP2a, metacaspase 2a 1.089 -0.052
3 251044_at AT5G02350 [Cysteine/Histidine-rich C1 domain family protein] 1.037 -0.100
4 262228_at AT1G68690 AtPERK9, proline-rich extensin-like receptor kinase 9, PERK9, proline-rich extensin-like receptor kinase 9 0.994 -0.144
5 253864_at AT4G27460 CBSX5, CBS domain containing protein 5 0.965 -0.104
6 257159_at AT3G24400 AtPERK2, proline-rich extensin-like receptor kinase 2, PERK2, proline-rich extensin-like receptor kinase 2 0.956 0.070
7 266507_at AT2G47860 SETH6 0.949 -0.059
8 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.920 -0.060
9 251229_at AT3G62740 BGLU7, beta glucosidase 7 0.823 -0.004
10 261873_at AT1G11350 CBRLK1, CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, RKS2, SD1-13, S-domain-1 13 0.794 0.261
11 250666_at AT5G07100 WRKY26, WRKY DNA-binding protein 26 0.774 -0.337
12 261073_at AT1G07300 [josephin protein-related] 0.726 -0.022
13 249850_at AT5G23240 DJC76, DNA J protein C76 0.710 0.284
14 258255_at AT3G26800 unknown 0.700 0.013
15 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.688 -0.041
16 245079_at AT2G23330 [copia-like retrotransposon family, has a 3.9e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] 0.680 0.003
17 250572_at AT5G08210 MIR834A, microRNA834A 0.672 -0.061
18 251502_at AT3G59130 [Cysteine/Histidine-rich C1 domain family protein] 0.668 -0.275
19 264281_at AT1G61830 [pseudogene] 0.634 -0.151
20 254513_at AT4G20235 CYP71A28, cytochrome P450, family 71, subfamily A, polypeptide 28 0.628 0.016
21 245990_at AT5G20640 unknown 0.628 -0.200
22 253519_at AT4G31240 AtNRX2, NRX2, nucleoredoxin 2 0.627 -0.015
23 253432_at AT4G32450 MEF8S, MEF8 similar 0.620 -0.084
24 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.610 -0.003
25 251929_at AT3G53920 SIG3, SIGMA FACTOR 3, SIGC, RNApolymerase sigma-subunit C 0.605 -0.025
26 260307_at AT1G70620 [cyclin-related] 0.590 -0.076
27 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.588 0.120
28 253506_at AT4G31980 unknown 0.557 -0.007
29 252569_at AT3G45420 LecRK-I.4, L-type lectin receptor kinase I.4 0.549 -0.052
30 267015_at AT2G39340 AtSAC3A, SAC3A, yeast Sac3 homolog A 0.543 0.050
31 260684_at AT1G17590 NF-YA8, nuclear factor Y, subunit A8 0.542 -0.173
32 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.540 -0.056
33 248452_at AT5G51300 [splicing factor-related] 0.536 0.071
34 262778_at AT1G13050 unknown 0.527 -0.110
35 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 0.526 0.238
36 266529_at AT2G16880 [Pentatricopeptide repeat (PPR) superfamily protein] 0.520 -0.029
37 249123_at AT5G43760 KCS20, 3-ketoacyl-CoA synthase 20 0.517 0.114
38 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] 0.513 -0.163
39 251076_at AT5G01970 unknown 0.510 0.016
40 259175_at AT3G01560 unknown 0.507 0.002
41 267423_at AT2G35060 KUP11, K+ uptake permease 11 0.504 0.124
42 248251_at AT5G53220 unknown 0.499 -0.035
43 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 0.498 0.286
44 259423_at AT1G13880 [ELM2 domain-containing protein] 0.495 0.145
45 258392_at AT3G15400 ATA20, anther 20 0.493 -0.016
46 248060_at AT5G55560 [Protein kinase superfamily protein] 0.493 0.105
47 248066_at AT5G55590 QRT1, QUARTET 1 0.491 0.057
48 265195_at AT2G36730 [Pentatricopeptide repeat (PPR) superfamily protein] 0.485 -0.035
49 261382_at AT1G05470 CVP2, COTYLEDON VASCULAR PATTERN 2 0.481 0.044
50 264169_at AT1G02020 [nitroreductase family protein] 0.478 0.129
51 249016_at AT5G44750 ATREV1, ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, REV1 0.471 -0.002
52 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 0.470 0.079
53 259666_at AT1G55310 At-SCL33, SC35-LIKE SPLICING FACTOR 33, ATSCL33, SC35-like splicing factor 33, SCL33, SC35-LIKE SPLICING FACTOR 33, SR33, SC35-like splicing factor 33 0.469 -0.070
54 248868_at AT5G46780 [VQ motif-containing protein] 0.466 -0.072
55 263385_at AT2G40170 ATEM6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, EM6, EARLY METHIONINE-LABELLED 6, GEA6, LATE EMBRYOGENESIS ABUNDANT 6 0.463 -0.103
56 249791_at AT5G23810 AAP7, amino acid permease 7 0.463 -0.124
57 258196_at AT3G13980 unknown 0.462 0.006
58 251766_at AT3G55910 unknown 0.461 -0.024
59 256493_at AT1G31600 AtTRM9, Arabidopsis thaliana tRNA methyltransferase 9, TRM9, tRNA methyltransferase 9 0.453 -0.138
60 248369_at AT5G52040 At-RS41, arginine/serine-rich splicing factor 41, ATRSP41, RS41, arginine/serine-rich splicing factor 41 0.452 0.144
61 246916_at AT5G25910 AtRLP52, receptor like protein 52, RLP52, receptor like protein 52 0.445 -0.166
62 265817_at AT2G18050 HIS1-3, histone H1-3 0.444 -0.044
63 267627_at AT2G42270 [U5 small nuclear ribonucleoprotein helicase] 0.441 -0.115
64 253808_at AT4G28300 unknown 0.439 0.002
65 249974_at AT5G18780 [F-box/RNI-like superfamily protein] 0.436 -0.020
66 247051_at AT5G66670 unknown 0.435 -0.097
67 254586_at AT4G19510 [Disease resistance protein (TIR-NBS-LRR class)] 0.431 0.046
68 255639_at AT4G00760 APRR8, pseudo-response regulator 8, PRR8, PSEUDO-RESPONSE REGULATOR 8 0.430 -0.179
69 264257_at AT1G09230 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.427 0.028
70 253575_at AT4G31060 [Integrase-type DNA-binding superfamily protein] 0.427 -0.218
71 264437_at AT1G27510 EX2, EXECUTER 2 0.426 0.093
72 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.423 -0.204
73 260599_at AT1G55940 CYP708A1, cytochrome P450, family 708, subfamily A, polypeptide 1 0.423 -0.019
74 249550_at AT5G38210 [Protein kinase family protein] 0.420 -0.013
75 262296_at AT1G27630 CYCT1;3, cyclin T 1;3 0.419 0.125
76 247813_at AT5G58330 [lactate/malate dehydrogenase family protein] 0.419 -0.030
77 267075_at AT2G41070 ATBZIP12, DPBF4, EEL, ENHANCED EM LEVEL 0.418 -0.025
78 262135_at AT1G78080 AtWIND1, RAP2.4, related to AP2 4, WIND1, wound induced dedifferentiation 1 0.417 0.042
79 255037_at AT4G09460 AtMYB6, myb domain protein 6, MYB6, myb domain protein 6 0.417 -0.057
80 249595_at AT5G37930 [Protein with RING/U-box and TRAF-like domains] 0.416 0.046
81 251088_at AT5G01480 [Cysteine/Histidine-rich C1 domain family protein] 0.415 -0.160
82 259242_at AT3G33520 ARP6, actin-related protein 6, ATARP6, actin-related protein 6, ESD1, EARLY IN SHORT DAYS 1, SUF3, SUPPRESSOR OF FRI 3 0.411 -0.015
83 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.407 0.004
84 261553_at AT1G63420 unknown 0.407 0.132
85 265902_at AT2G25590 [Plant Tudor-like protein] 0.402 -0.048
86 263196_at AT1G36070 [Transducin/WD40 repeat-like superfamily protein] 0.401 0.092
87 246951_at AT5G04880 [expressed protein] 0.401 -0.255
88 263260_at AT1G10570 OTS2, OVERLY TOLERANT TO SALT 2, ULP1C, UB-LIKE PROTEASE 1C 0.399 0.094
89 259000_at AT3G01860 unknown 0.397 -0.034
90 254188_at AT4G23920 ATUGE2, UDP-GLC 4-EPIMERASE 2, UGE2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 0.395 -0.045
91 252096_at AT3G51180 [Zinc finger C-x8-C-x5-C-x3-H type family protein] 0.392 -0.144
92 266910_at AT2G45920 [U-box domain-containing protein] 0.387 -0.198
93 267054_at AT2G38370 unknown 0.383 -0.011
94 267127_at AT2G23610 ATMES3, ARABIDOPSIS THALIANA METHYL ESTERASE 3, MES3, methyl esterase 3 0.383 0.223
95 261232_at AT1G20220 [Alba DNA/RNA-binding protein] -0.783 0.095
96 246229_at AT4G37160 sks15, SKU5 similar 15 -0.750 -0.208
97 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 -0.700 0.007
98 247094_at AT5G66280 GMD1, GDP-D-mannose 4,6-dehydratase 1 -0.618 -0.238
99 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.616 -0.209
100 258432_at AT3G16570 ATRALF23, ARABIDOPSIS RAPID ALKALINIZATION FACTOR 23, RALF23, rapid alkalinization factor 23 -0.606 0.047
101 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.586 -0.002
102 254606_at AT4G19030 AT-NLM1, ATNLM1, NOD26-LIKE MAJOR INTRINSIC PROTEIN 1, NIP1;1, NOD26-LIKE INTRINSIC PROTEIN 1;1, NLM1, NOD26-like major intrinsic protein 1 -0.579 -0.115
103 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.576 -0.036
104 255591_at AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 -0.515 0.055
105 260558_at AT2G43600 [Chitinase family protein] -0.506 -0.114
106 249756_at AT5G24313 unknown -0.498 -0.105
107 259195_at AT3G01730 unknown -0.493 -0.214
108 251964_at AT3G53370 [S1FA-like DNA-binding protein] -0.483 -0.009
109 262131_at AT1G02900 ATRALF1, RAPID ALKALINIZATION FACTOR 1, RALF1, rapid alkalinization factor 1, RALFL1, RALF-LIKE 1 -0.482 0.068
110 255885_at AT1G20330 CVP1, COTYLEDON VASCULAR PATTERN 1, FRL1, FRILL1, SMT2, sterol methyltransferase 2 -0.471 0.178
111 246534_at AT5G15890 TBL21, TRICHOME BIREFRINGENCE-LIKE 21 -0.445 -0.233
112 265377_at AT2G05790 [O-Glycosyl hydrolases family 17 protein] -0.444 0.234
113 263677_at AT1G04520 PDLP2, plasmodesmata-located protein 2 -0.431 0.183
114 266687_at AT2G19670 ATPRMT1A, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, PRMT1A, protein arginine methyltransferase 1A -0.431 -0.005
115 247476_at AT5G62330 unknown -0.425 -0.044
116 262658_at AT1G14220 [Ribonuclease T2 family protein] -0.423 -0.099
117 253763_at AT4G28850 ATXTH26, XTH26, xyloglucan endotransglucosylase/hydrolase 26 -0.421 -0.051
118 260549_at AT2G43535 [Scorpion toxin-like knottin superfamily protein] -0.416 -0.117
119 250930_at AT5G03160 ATP58IPK, homolog of mamallian P58IPK, P58IPK, homolog of mamallian P58IPK -0.413 -0.007
120 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.413 0.046
121 250108_at AT5G15150 ATHB-3, homeobox 3, ATHB3, HAT7, HOMEOBOX FROM ARABIDOPSIS THALIANA 7, HB-3, homeobox 3 -0.412 -0.068
122 250537_at AT5G08565 [Transcription initiation Spt4-like protein] -0.412 -0.127
123 261727_at AT1G76090 SMT3, sterol methyltransferase 3 -0.407 0.189
124 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.402 0.086
125 266566_at AT2G24040 [Low temperature and salt responsive protein family] -0.393 -0.016
126 249469_at AT5G39320 UDG4, UDP-glucose dehydrogenase 4 -0.392 0.036
127 264892_at AT1G23160 [Auxin-responsive GH3 family protein] -0.389 -0.011
128 262198_at AT1G53830 ATPME2, pectin methylesterase 2, PME2, pectin methylesterase 2 -0.385 0.030
129 262978_at AT1G75780 TUB1, tubulin beta-1 chain -0.381 0.084
130 255595_at AT4G01700 [Chitinase family protein] -0.376 0.236
131 253482_at AT4G31985 [Ribosomal protein L39 family protein] -0.372 0.086
132 258345_at AT3G22845 [emp24/gp25L/p24 family/GOLD family protein] -0.370 0.057
133 258912_at AT3G06460 [GNS1/SUR4 membrane protein family] -0.370 -0.038
134 262864_at AT1G64920 [UDP-Glycosyltransferase superfamily protein] -0.369 -0.026
135 250748_at AT5G05710 [Pleckstrin homology (PH) domain superfamily protein] -0.368 -0.064
136 261790_at AT1G16000 unknown -0.366 0.003
137 253957_at AT4G26320 AGP13, arabinogalactan protein 13 -0.365 -0.124
138 249159_at AT5G43460 [HR-like lesion-inducing protein-related] -0.364 0.086
139 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.361 -0.018
140 251210_at AT3G62810 [complex 1 family protein / LVR family protein] -0.357 0.204
141 265480_at AT2G15970 ATCOR413-PM1, ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, ATCYP19, CYCLOPHILLIN 19, COR413-PM1, cold regulated 413 plasma membrane 1, FL3-5A3, WCOR413, WCOR413-LIKE -0.355 0.045
142 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A -0.352 0.118
143 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 -0.351 -0.163
144 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] -0.350 -0.090
145 261831_at AT1G10630 ARFA1F, ADP-ribosylation factor A1F, ATARFA1F, ADP-ribosylation factor A1F -0.350 -0.053
146 257867_at AT3G17780 unknown -0.347 0.130
147 251167_at AT3G63360 [defensin-related] -0.347 -0.155
148 251007_at AT5G02610 [Ribosomal L29 family protein ] -0.346 0.042
149 247612_at AT5G60730 [Anion-transporting ATPase] -0.346 -0.137
150 253914_at AT4G27400 [Late embryogenesis abundant (LEA) protein-related] -0.345 -0.154
151 260077_at AT1G73620 [Pathogenesis-related thaumatin superfamily protein] -0.342 -0.111
152 254723_at AT4G13510 AMT1;1, ammonium transporter 1;1, ATAMT1, ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ATAMT1;1 -0.341 0.051
153 248957_at AT5G45620 [Proteasome component (PCI) domain protein] -0.335 0.008
154 250778_at AT5G05500 MOP10 -0.327 -0.058
155 256935_at AT3G22570 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.327 -0.014
156 255279_at AT4G04950 AtGRXS17, Arabidopsis thaliana monothiol glutaredoxin 17, GRXS17, monothiol glutaredoxin 17 -0.326 0.112
157 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 -0.326 -0.135
158 261157_at AT1G34510 [Peroxidase superfamily protein] -0.325 -0.124
159 252390_at AT3G47836 unknown -0.324 0.007
160 263373_at AT2G20515 unknown -0.324 0.013
161 255554_at AT4G01897 unknown -0.324 0.060
162 249934_at AT5G22410 RHS18, root hair specific 18 -0.323 -0.136
163 259592_at AT1G27950 LTPG1, glycosylphosphatidylinositol-anchored lipid protein transfer 1 -0.323 0.038
164 261199_at AT1G12950 RSH2, root hair specific 2 -0.322 -0.271
165 257131_at AT3G20240 [Mitochondrial substrate carrier family protein] -0.320 0.048
166 261228_at AT1G20050 HYD1, HYDRA1, MAD4, miRNA action deficient 4 -0.317 0.045
167 255516_at AT4G02270 RHS13, root hair specific 13 -0.317 -0.062
168 246015_at AT5G10700 [Peptidyl-tRNA hydrolase II (PTH2) family protein] -0.315 0.118
169 264577_at AT1G05260 RCI3, RARE COLD INDUCIBLE GENE 3, RCI3A -0.313 -0.119
170 251446_at AT3G59840 unknown -0.313 0.053
171 250992_at AT5G02260 ATEXP9, ATEXPA9, expansin A9, ATHEXP ALPHA 1.10, EXP9, EXPA9, expansin A9 -0.312 -0.032
172 252238_at AT3G49960 [Peroxidase superfamily protein] -0.312 -0.251
173 247947_at AT5G57090 AGR, AGRAVITROPIC ROOT, AGR1, AGRAVITROPIC ROOT 1, ATPIN2, ARABIDOPSIS THALIANA PIN-FORMED 2, EIR1, ETHYLENE INSENSITIVE ROOT 1, MM31, PIN2, PIN-FORMED 2, WAV6, WAVY ROOTS 6 -0.309 -0.008
174 253291_at AT4G33865 [Ribosomal protein S14p/S29e family protein] -0.309 0.036
175 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.308 0.048
176 253731_at AT4G29260 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.308 0.102
177 248790_at AT5G47450 ATTIP2;3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, DELTA-TIP3, DELTA-TONOPLAST INTRINSIC PROTEIN 3, TIP2;3, tonoplast intrinsic protein 2;3 -0.306 -0.085
178 263482_at AT2G03980 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.305 0.015
179 262329_at AT1G64090 RTNLB3, Reticulan like protein B3 -0.304 0.065
180 255569_at AT4G01320 ATSTE24, STE24 -0.304 0.098
181 246793_at AT5G27210 Cand8, candidate G-protein Coupled Receptor 8 -0.301 -0.005
182 253063_at AT4G37640 ACA2, calcium ATPase 2 -0.300 0.037
183 249847_at AT5G23210 SCPL34, serine carboxypeptidase-like 34 -0.298 0.031
184 253942_at AT4G27010 EMB2788, EMBRYO DEFECTIVE 2788 -0.296 -0.112
185 248753_at AT5G47630 mtACP3, mitochondrial acyl carrier protein 3 -0.294 0.029
186 253047_at AT4G37295 unknown -0.293 -0.069
187 259933_at AT1G34350 unknown -0.289 0.057