4.0:Information of module
roottip control pSHR
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0030036 actin cytoskeleton organization BP 3.765e-05
GO:0048827 phyllome development BP 7.475e-05
GO:0030029 actin filament-based process BP 8.055e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006914 autophagy BP 4.016e-04
GO:0009853 photorespiration BP 1.258e-03
GO:0043094 cellular metabolic compound salvage BP 3.173e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
roottip control pSHR		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 260565_at AT2G43800 [Actin-binding FH2 (formin homology 2) family protein] 0.879 0.209
2 253011_at AT4G37890 EDA40, embryo sac development arrest 40 0.657 0.076
3 251229_at AT3G62740 BGLU7, beta glucosidase 7 0.650 -0.082
4 261399_at AT1G79620 [Leucine-rich repeat protein kinase family protein] 0.641 0.302
5 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.523 -0.100
6 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.500 -0.076
7 266368_at AT2G41380 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.475 0.029
8 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.457 0.037
9 254863_at AT4G11980 ATNUDT14, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14, ATNUDX14, nudix hydrolase homolog 14, NUDX14, nudix hydrolase homolog 14 0.432 0.077
10 255873_at AT2G30340 LBD13, LOB domain-containing protein 13 0.415 0.094
11 263490_at AT2G42620 MAX2, MORE AXILLARY BRANCHES 2, ORE9, ORESARA 9, PPS, PLEIOTROPIC PHOTOSIGNALING 0.409 0.064
12 245702_at AT5G04220 ATSYTC, NTMC2T1.3, NTMC2TYPE1.3, SYT3, synaptotagmin 3, SYTC 0.399 0.021
13 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 0.398 -0.157
14 253614_at AT4G30350 SMXL2, SMAX1-like 2 0.387 0.055
15 267054_at AT2G38370 unknown 0.371 -0.139
16 264054_at AT2G22540 AGL22, AGAMOUS-like 22, FAQ1, Flowering Arabidopsis QTL1, SVP, SHORT VEGETATIVE PHASE 0.361 0.003
17 261382_at AT1G05470 CVP2, COTYLEDON VASCULAR PATTERN 2 0.335 -0.143
18 248821_at AT5G47070 [Protein kinase superfamily protein] 0.327 0.209
19 257771_at AT3G23000 ATSR2, ATSRPK1, CIPK7, CBL-interacting protein kinase 7, PKS7, SnRK3.10, SNF1-RELATED PROTEIN KINASE 3.10 0.318 -0.100
20 257592_at AT3G24982 ATRLP40, receptor like protein 40, RLP40, receptor like protein 40 0.316 0.053
21 266838_at AT2G25980 [Mannose-binding lectin superfamily protein] 0.312 -0.210
22 252488_at AT3G46700 [UDP-Glycosyltransferase superfamily protein] 0.310 0.040
23 261063_at AT1G07520 [GRAS family transcription factor] 0.309 0.276
24 259666_at AT1G55310 At-SCL33, SC35-LIKE SPLICING FACTOR 33, ATSCL33, SC35-like splicing factor 33, SCL33, SC35-LIKE SPLICING FACTOR 33, SR33, SC35-like splicing factor 33 0.301 -0.026
25 251076_at AT5G01970 unknown 0.301 0.121
26 253516_at AT4G31360 [selenium binding] 0.294 -0.119
27 266234_at AT2G02350 AtPP2-B9, Phloem protein 2-B9, SKIP3, SKP1 interacting partner 3 0.288 0.154
28 245584_at AT4G14940 AO1, amine oxidase 1, ATAO1, amine oxidase 1 0.287 0.051
29 264663_at AT1G09970 LRR XI-23, RLK7, receptor-like kinase 7 0.277 -0.230
30 258983_at AT3G08860 PYD4, PYRIMIDINE 4 0.276 -0.100
31 264486_at AT1G77180 SKIP, SNW/Ski-interacting protein 0.272 -0.006
32 253173_at AT4G35110 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.269 0.050
33 254817_at AT4G12460 ORP2B, OSBP(oxysterol binding protein)-related protein 2B 0.267 0.003
34 253397_at AT4G32710 PERK14, proline-rich extensin-like receptor kinase 14 0.256 -0.034
35 246498_at AT5G16230 [Plant stearoyl-acyl-carrier-protein desaturase family protein] 0.256 0.022
36 265060_at AT1G52150 ATHB-15, ATHB15, CNA, CORONA, ICU4, INCURVATA 4 0.253 0.065
37 250986_at AT5G02850 [hydroxyproline-rich glycoprotein family protein] 0.250 0.008
38 252820_at AT3G42640 AHA8, H(+)-ATPase 8, HA8, H(+)-ATPase 8 0.248 0.072
39 265817_at AT2G18050 HIS1-3, histone H1-3 0.247 0.087
40 255790_at AT2G33560 BUBR1, BUB1-related (BUB1: budding uninhibited by benzymidazol 1) 0.239 0.023
41 250095_at AT5G17230 PSY, PHYTOENE SYNTHASE 0.239 -0.043
42 247240_at AT5G64660 ATCMPG2, CMPG2, CYS, MET, PRO, and GLY protein 2 0.239 -0.013
43 245568_at AT4G14650 unknown 0.235 -0.116
44 261553_at AT1G63420 unknown 0.232 -0.152
45 250864_at AT5G03870 [Glutaredoxin family protein] 0.229 0.063
46 263305_at AT2G01930 ATBPC1, BASIC PENTACYSTEINE1, BBR, BPC1, basic pentacysteine1 -1.198 -0.019
47 247070_at AT5G66815 unknown -0.913 0.082
48 259481_at AT1G18970 GLP4, germin-like protein 4 -0.693 -0.131
49 249756_at AT5G24313 unknown -0.583 0.040
50 247882_at AT5G57785 unknown -0.569 0.103
51 256563_at AT3G29780 RALFL27, ralf-like 27 -0.562 0.102
52 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR -0.549 0.012
53 252882_at AT4G39675 unknown -0.529 0.076
54 257074_at AT3G19660 unknown -0.483 0.085
55 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 -0.481 0.076
56 256926_at AT3G22540 unknown -0.476 -0.495
57 267084_at AT2G41180 SIB2, sigma factor binding protein 2 -0.476 0.091
58 253613_at AT4G30320 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.467 -0.026
59 266123_at AT2G45180 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.447 -0.067
60 260005_at AT1G67920 unknown -0.432 -0.150
61 266168_at AT2G38870 [Serine protease inhibitor, potato inhibitor I-type family protein] -0.408 0.033
62 265883_at AT2G42310 unknown -0.402 -0.010
63 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] -0.402 0.077
64 254313_at AT4G22460 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.398 0.020
65 252502_at AT3G46900 COPT2, copper transporter 2 -0.394 0.109
66 253482_at AT4G31985 [Ribosomal protein L39 family protein] -0.382 -0.109
67 250108_at AT5G15150 ATHB-3, homeobox 3, ATHB3, HAT7, HOMEOBOX FROM ARABIDOPSIS THALIANA 7, HB-3, homeobox 3 -0.368 -0.056
68 250922_at AT5G03345 unknown -0.347 0.142
69 254774_at AT4G13440 [Calcium-binding EF-hand family protein] -0.341 0.092
70 262536_at AT1G17100 AtHBP1, HBP1, haem-binding protein 1 -0.335 -0.094
71 246394_at AT1G58160 JAX1, JACALIN-TYPE LECTIN REQUIRED FOR POTEXVIRUS RESISTANCE 1 -0.327 0.039
72 266259_at AT2G27830 unknown -0.324 0.053
73 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.323 -0.029
74 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.321 0.129
75 259592_at AT1G27950 LTPG1, glycosylphosphatidylinositol-anchored lipid protein transfer 1 -0.297 -0.061
76 253291_at AT4G33865 [Ribosomal protein S14p/S29e family protein] -0.286 0.165
77 261790_at AT1G16000 unknown -0.284 -0.028
78 251446_at AT3G59840 unknown -0.284 -0.172
79 267451_at AT2G33710 [Integrase-type DNA-binding superfamily protein] -0.283 -0.175
80 252879_at AT4G39390 ATNST-KT1, A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, NST-K1, nucleotide sugar transporter-KT 1 -0.280 0.083
81 250097_at AT5G17280 unknown -0.278 -0.049
82 250553_at AT5G07960 unknown -0.277 0.032
83 265006_at AT1G61570 TIM13, translocase of the inner mitochondrial membrane 13 -0.276 -0.005
84 258821_at AT3G07230 [wound-responsive protein-related] -0.269 0.027
85 251167_at AT3G63360 [defensin-related] -0.268 0.557
86 260290_at AT1G80510 [Transmembrane amino acid transporter family protein] -0.267 0.019
87 262658_at AT1G14220 [Ribonuclease T2 family protein] -0.266 0.044
88 253047_at AT4G37295 unknown -0.264 0.076
89 266857_at AT2G26900 BASS2, bile acid:sodium symporter family protein 2 -0.263 -0.101