4.0:Information of module
roottip control pSCR
In comparison with Col0-PsmES4326-24hpi help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044763 single-organism cellular process BP 1.266e-08
GO:0044699 single-organism process BP 1.223e-06
GO:0006486 protein glycosylation BP 1.725e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0046488 phosphatidylinositol metabolic process BP 8.707e-07
GO:0006661 phosphatidylinositol biosynthetic proces... BP 9.777e-07
GO:0006412 translation BP 1.254e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
roottip control pSCR		 Log2 signal ratio
Col0-PsmES4326-24hpi
1 251044_at AT5G02350 [Cysteine/Histidine-rich C1 domain family protein] 0.799 0.088
2 245845_at AT1G26150 AtPERK10, proline-rich extensin-like receptor kinase 10, PERK10, proline-rich extensin-like receptor kinase 10 0.762 -0.627
3 262228_at AT1G68690 AtPERK9, proline-rich extensin-like receptor kinase 9, PERK9, proline-rich extensin-like receptor kinase 9 0.626 0.687
4 249016_at AT5G44750 ATREV1, ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, REV1 0.530 0.178
5 265966_at AT2G37220 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.514 -0.447
6 253519_at AT4G31240 AtNRX2, NRX2, nucleoredoxin 2 0.494 0.698
7 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.472 0.225
8 254724_at AT4G13630 unknown 0.461 0.200
9 245702_at AT5G04220 ATSYTC, NTMC2T1.3, NTMC2TYPE1.3, SYT3, synaptotagmin 3, SYTC 0.450 0.284
10 245117_at AT2G41560 ACA4, autoinhibited Ca(2+)-ATPase, isoform 4 0.442 -0.443
11 264223_s_at AT3G16030 CES101, CALLUS EXPRESSION OF RBCS 101, RFO3, RESISTANCE TO FUSARIUM OXYSPORUM 3 0.435 0.745
12 247015_at AT5G66960 [Prolyl oligopeptidase family protein] 0.431 -0.082
13 266507_at AT2G47860 SETH6 0.426 0.099
14 259429_at AT1G01600 CYP86A4, cytochrome P450, family 86, subfamily A, polypeptide 4 0.416 0.040
15 252962_at AT4G38780 [Pre-mRNA-processing-splicing factor] 0.396 0.024
16 258255_at AT3G26800 unknown 0.387 0.095
17 266733_at AT2G03280 [O-fucosyltransferase family protein] 0.385 -0.115
18 245079_at AT2G23330 [copia-like retrotransposon family, has a 3.9e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] 0.381 0.189
19 248553_at AT5G50170 [C2 calcium/lipid-binding and GRAM domain containing protein] 0.373 0.126
20 253278_at AT4G34220 [Leucine-rich repeat protein kinase family protein] 0.367 -0.846
21 267015_at AT2G39340 AtSAC3A, SAC3A, yeast Sac3 homolog A 0.366 0.150
22 255265_at AT4G05190 ATK5, kinesin 5 0.364 -0.130
23 256661_at AT3G11964 RRP5, Ribosomal RNA Processing 5 0.347 -0.413
24 263196_at AT1G36070 [Transducin/WD40 repeat-like superfamily protein] 0.345 0.174
25 252820_at AT3G42640 AHA8, H(+)-ATPase 8, HA8, H(+)-ATPase 8 0.341 -0.058
26 251787_at AT3G55410 [2-oxoglutarate dehydrogenase, E1 component] 0.323 0.252
27 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.323 0.450
28 262068_at AT1G80070 EMB14, EMBRYO DEFECTIVE 14, EMB177, EMBRYO DEFECTIVE 177, EMB33, EMBRYO DEFECTIVE 33, SUS2, ABNORMAL SUSPENSOR 2 0.311 -0.069
29 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.309 0.266
30 249550_at AT5G38210 [Protein kinase family protein] 0.307 0.308
31 248547_at AT5G50280 EMB1006, embryo defective 1006 0.305 -0.285
32 257963_at AT3G19840 ATPRP40C, pre-mRNA-processing protein 40C, PRP40C, pre-mRNA-processing protein 40C 0.303 0.124
33 259422_at AT1G13810 [Restriction endonuclease, type II-like superfamily protein] 0.302 -0.362
34 260660_at AT1G19485 [Transducin/WD40 repeat-like superfamily protein] 0.294 -0.018
35 259987_at AT1G75030 ATLP-3, thaumatin-like protein 3, TLP-3, thaumatin-like protein 3 0.294 -0.036
36 266006_at AT2G37360 ABCG2, ATP-binding cassette G2 0.292 0.140
37 266951_at AT2G18940 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.291 -0.406
38 251897_at AT3G54360 NCA1, NO CATALASE ACTIVITY 1 0.289 0.078
39 266349_at AT2G01460 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.286 0.300
40 261063_at AT1G07520 [GRAS family transcription factor] 0.281 0.439
41 246897_at AT5G25560 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 0.280 0.084
42 247048_at AT5G66560 [Phototropic-responsive NPH3 family protein] 0.278 -0.275
43 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.277 0.757
44 259903_at AT1G74160 TRM4, TON1 Recruiting Motif 4 0.277 -0.292
45 254602_at AT4G19040 EDR2, ENHANCED DISEASE RESISTANCE 2 0.276 0.306
46 262299_at AT1G27520 [Glycosyl hydrolase family 47 protein] 0.276 0.057
47 262109_at AT1G02730 ATCSLD5, cellulose synthase-like D5, CSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6 0.274 -0.283
48 262296_at AT1G27630 CYCT1;3, cyclin T 1;3 0.273 0.187
49 267406_at AT2G34780 EMB1611, EMBRYO DEFECTIVE 1611, MEE22, MATERNAL EFFECT EMBRYO ARREST 22 0.269 -0.016
50 255899_at AT1G17970 [RING/U-box superfamily protein] 0.266 -0.570
51 255639_at AT4G00760 APRR8, pseudo-response regulator 8, PRR8, PSEUDO-RESPONSE REGULATOR 8 0.258 -0.140
52 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] 0.258 0.438
53 261979_at AT1G37130 ATNR2, ARABIDOPSIS NITRATE REDUCTASE 2, B29, CHL3, CHLORATE RESISTANT 3, NIA2, nitrate reductase 2, NIA2-1, NR, NITRATE REDUCTASE, NR2, NITRATE REDUCTASE 2 0.255 0.079
54 265302_at AT2G13970 [Mutator-like transposase family, has a 4.1e-39 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.254 0.111
55 259036_at AT3G09220 LAC7, laccase 7 0.254 0.792
56 262548_at AT1G31280 AGO2, argonaute 2, AtAGO2 0.251 0.354
57 256930_at AT3G22460 OASA2, O-acetylserine (thiol) lyase (OAS-TL) isoform A2 0.248 0.491
58 265092_at AT1G03910 CTN, CACTIN 0.248 0.036
59 259235_at AT3G11600 unknown 0.246 0.711
60 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.676 -0.318
61 250562_at AT5G08040 TOM5, mitochondrial import receptor subunit TOM5 homolog -0.648 -0.252
62 252612_at AT3G45160 [Putative membrane lipoprotein] -0.631 -0.458
63 251240_at AT3G62450 unknown -0.609 0.127
64 247882_at AT5G57785 unknown -0.604 -0.148
65 252169_at AT3G50520 [Phosphoglycerate mutase family protein] -0.575 0.128
66 256563_at AT3G29780 RALFL27, ralf-like 27 -0.551 0.118
67 262759_at AT1G10800 unknown -0.522 0.056
68 249134_at AT5G43150 unknown -0.492 -0.155
69 259195_at AT3G01730 unknown -0.478 0.110
70 248972_at AT5G45010 ATDSS1(V), DSS1 homolog on chromosome V, DSS1(V), DSS1 homolog on chromosome V -0.477 0.316
71 251964_at AT3G53370 [S1FA-like DNA-binding protein] -0.465 0.126
72 246270_at AT4G36500 unknown -0.456 0.259
73 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.455 0.035
74 251355_at AT3G61100 [Putative endonuclease or glycosyl hydrolase] -0.451 -0.650
75 251517_at AT3G59370 [Vacuolar calcium-binding protein-related] -0.450 0.118
76 245495_at AT4G16400 unknown -0.448 0.084
77 253291_at AT4G33865 [Ribosomal protein S14p/S29e family protein] -0.444 -0.048
78 267084_at AT2G41180 SIB2, sigma factor binding protein 2 -0.444 -0.258
79 265883_at AT2G42310 unknown -0.442 0.170
80 250800_at AT5G05370 [Cytochrome b-c1 complex, subunit 8 protein] -0.442 0.258
81 250454_at AT5G09830 BolA2, homolog of E.coli BolA 2 -0.437 0.068
82 260549_at AT2G43535 [Scorpion toxin-like knottin superfamily protein] -0.428 0.063
83 247006_at AT5G67490 unknown -0.427 0.246
84 253636_at AT4G30500 unknown -0.425 0.427
85 252390_at AT3G47836 unknown -0.415 0.020
86 262876_at AT1G64750 ATDSS1(I), deletion of SUV3 suppressor 1(I), DSS1(I), deletion of SUV3 suppressor 1(I) -0.414 0.198
87 263673_at AT2G04800 unknown -0.413 0.103
88 253629_at AT4G30450 [glycine-rich protein] -0.413 0.212
89 246479_at AT5G16060 [Cytochrome c oxidase biogenesis protein Cmc1-like] -0.410 -0.190
90 255074_at AT4G09100 [RING/U-box superfamily protein] -0.410 0.848
91 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 -0.407 0.238
92 250923_at AT5G03455 ACR2, ARSENATE REDUCTASE 2, ARATH;CDC25, AtACR2, CDC25 -0.403 0.153
93 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.397 -0.059
94 246582_at AT1G31750 [proline-rich family protein] -0.394 0.427
95 260683_at AT1G17560 HLL, HUELLENLOS -0.394 -0.164
96 253482_at AT4G31985 [Ribosomal protein L39 family protein] -0.392 -0.028
97 260867_at AT1G43790 TED6, tracheary element differentiation-related 6 -0.389 -0.020
98 263785_at AT2G46390 SDH8, succinate dehydrogenase 8 -0.387 0.183
99 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR -0.379 0.969
100 262558_at AT1G31335 unknown -0.379 -0.244
101 266566_at AT2G24040 [Low temperature and salt responsive protein family] -0.376 0.350
102 248631_at AT5G49000 [Galactose oxidase/kelch repeat superfamily protein] -0.374 0.267
103 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.373 0.068
104 253582_at AT4G30670 [Putative membrane lipoprotein] -0.366 -0.005
105 258821_at AT3G07230 [wound-responsive protein-related] -0.364 -0.030
106 255525_at AT4G02340 [alpha/beta-Hydrolases superfamily protein] -0.363 0.092
107 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.361 -0.184
108 252502_at AT3G46900 COPT2, copper transporter 2 -0.358 -0.184
109 248746_at AT5G47890 [NADH-ubiquinone oxidoreductase B8 subunit, putative] -0.357 0.072
110 266796_at AT2G02880 [mucin-related] -0.353 0.020
111 255759_at AT1G16790 [ribosomal protein-related] -0.351 -0.186
112 260564_at AT2G43810 LSM6B, SM-like 6B -0.346 -0.053
113 245334_at AT4G15800 RALFL33, ralf-like 33 -0.339 0.054
114 249863_at AT5G22950 VPS24.1 -0.338 0.199
115 267178_at AT2G37750 unknown -0.336 1.062
116 258713_at AT3G09735 [S1FA-like DNA-binding protein] -0.333 0.161
117 256309_at AT1G30380 PSAK, photosystem I subunit K -0.324 -0.101
118 247520_at AT5G61310 [Cytochrome c oxidase subunit Vc family protein] -0.324 -0.030