4.0:Information of module
roottip control pSCR
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044763 single-organism cellular process BP 1.266e-08
GO:0044699 single-organism process BP 1.223e-06
GO:0006486 protein glycosylation BP 1.725e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0046488 phosphatidylinositol metabolic process BP 8.707e-07
GO:0006661 phosphatidylinositol biosynthetic proces... BP 9.777e-07
GO:0006412 translation BP 1.254e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
roottip control pSCR		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 251044_at AT5G02350 [Cysteine/Histidine-rich C1 domain family protein] 0.799 -0.225
2 245845_at AT1G26150 AtPERK10, proline-rich extensin-like receptor kinase 10, PERK10, proline-rich extensin-like receptor kinase 10 0.762 0.504
3 262228_at AT1G68690 AtPERK9, proline-rich extensin-like receptor kinase 9, PERK9, proline-rich extensin-like receptor kinase 9 0.626 -0.085
4 249016_at AT5G44750 ATREV1, ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, REV1 0.530 -0.715
5 265966_at AT2G37220 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.514 0.178
6 253519_at AT4G31240 AtNRX2, NRX2, nucleoredoxin 2 0.494 0.110
7 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.472 0.693
8 254724_at AT4G13630 unknown 0.461 1.142
9 245702_at AT5G04220 ATSYTC, NTMC2T1.3, NTMC2TYPE1.3, SYT3, synaptotagmin 3, SYTC 0.450 -0.296
10 245117_at AT2G41560 ACA4, autoinhibited Ca(2+)-ATPase, isoform 4 0.442 0.075
11 264223_s_at AT3G16030 CES101, CALLUS EXPRESSION OF RBCS 101, RFO3, RESISTANCE TO FUSARIUM OXYSPORUM 3 0.435 -1.079
12 247015_at AT5G66960 [Prolyl oligopeptidase family protein] 0.431 0.259
13 266507_at AT2G47860 SETH6 0.426 -1.423
14 259429_at AT1G01600 CYP86A4, cytochrome P450, family 86, subfamily A, polypeptide 4 0.416 0.195
15 252962_at AT4G38780 [Pre-mRNA-processing-splicing factor] 0.396 0.413
16 258255_at AT3G26800 unknown 0.387 0.529
17 266733_at AT2G03280 [O-fucosyltransferase family protein] 0.385 -0.483
18 245079_at AT2G23330 [copia-like retrotransposon family, has a 3.9e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] 0.381 -0.747
19 248553_at AT5G50170 [C2 calcium/lipid-binding and GRAM domain containing protein] 0.373 -0.483
20 253278_at AT4G34220 [Leucine-rich repeat protein kinase family protein] 0.367 0.298
21 267015_at AT2G39340 AtSAC3A, SAC3A, yeast Sac3 homolog A 0.366 0.228
22 255265_at AT4G05190 ATK5, kinesin 5 0.364 0.658
23 256661_at AT3G11964 RRP5, Ribosomal RNA Processing 5 0.347 0.640
24 263196_at AT1G36070 [Transducin/WD40 repeat-like superfamily protein] 0.345 0.289
25 252820_at AT3G42640 AHA8, H(+)-ATPase 8, HA8, H(+)-ATPase 8 0.341 -0.556
26 251787_at AT3G55410 [2-oxoglutarate dehydrogenase, E1 component] 0.323 1.016
27 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.323 0.918
28 262068_at AT1G80070 EMB14, EMBRYO DEFECTIVE 14, EMB177, EMBRYO DEFECTIVE 177, EMB33, EMBRYO DEFECTIVE 33, SUS2, ABNORMAL SUSPENSOR 2 0.311 1.033
29 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.309 0.922
30 249550_at AT5G38210 [Protein kinase family protein] 0.307 0.338
31 248547_at AT5G50280 EMB1006, embryo defective 1006 0.305 0.072
32 257963_at AT3G19840 ATPRP40C, pre-mRNA-processing protein 40C, PRP40C, pre-mRNA-processing protein 40C 0.303 0.166
33 259422_at AT1G13810 [Restriction endonuclease, type II-like superfamily protein] 0.302 0.718
34 260660_at AT1G19485 [Transducin/WD40 repeat-like superfamily protein] 0.294 0.040
35 259987_at AT1G75030 ATLP-3, thaumatin-like protein 3, TLP-3, thaumatin-like protein 3 0.294 -0.354
36 266006_at AT2G37360 ABCG2, ATP-binding cassette G2 0.292 -0.364
37 266951_at AT2G18940 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.291 0.098
38 251897_at AT3G54360 NCA1, NO CATALASE ACTIVITY 1 0.289 0.894
39 266349_at AT2G01460 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.286 -0.150
40 261063_at AT1G07520 [GRAS family transcription factor] 0.281 0.128
41 246897_at AT5G25560 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 0.280 0.668
42 247048_at AT5G66560 [Phototropic-responsive NPH3 family protein] 0.278 0.198
43 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.277 -0.763
44 259903_at AT1G74160 TRM4, TON1 Recruiting Motif 4 0.277 0.180
45 254602_at AT4G19040 EDR2, ENHANCED DISEASE RESISTANCE 2 0.276 0.376
46 262299_at AT1G27520 [Glycosyl hydrolase family 47 protein] 0.276 0.620
47 262109_at AT1G02730 ATCSLD5, cellulose synthase-like D5, CSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6 0.274 0.156
48 262296_at AT1G27630 CYCT1;3, cyclin T 1;3 0.273 0.314
49 267406_at AT2G34780 EMB1611, EMBRYO DEFECTIVE 1611, MEE22, MATERNAL EFFECT EMBRYO ARREST 22 0.269 0.736
50 255899_at AT1G17970 [RING/U-box superfamily protein] 0.266 -0.211
51 255639_at AT4G00760 APRR8, pseudo-response regulator 8, PRR8, PSEUDO-RESPONSE REGULATOR 8 0.258 0.800
52 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] 0.258 0.044
53 261979_at AT1G37130 ATNR2, ARABIDOPSIS NITRATE REDUCTASE 2, B29, CHL3, CHLORATE RESISTANT 3, NIA2, nitrate reductase 2, NIA2-1, NR, NITRATE REDUCTASE, NR2, NITRATE REDUCTASE 2 0.255 1.348
54 265302_at AT2G13970 [Mutator-like transposase family, has a 4.1e-39 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.254 -0.476
55 259036_at AT3G09220 LAC7, laccase 7 0.254 -0.110
56 262548_at AT1G31280 AGO2, argonaute 2, AtAGO2 0.251 -0.519
57 256930_at AT3G22460 OASA2, O-acetylserine (thiol) lyase (OAS-TL) isoform A2 0.248 0.396
58 265092_at AT1G03910 CTN, CACTIN 0.248 0.487
59 259235_at AT3G11600 unknown 0.246 0.023
60 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.676 -0.455
61 250562_at AT5G08040 TOM5, mitochondrial import receptor subunit TOM5 homolog -0.648 1.119
62 252612_at AT3G45160 [Putative membrane lipoprotein] -0.631 -1.005
63 251240_at AT3G62450 unknown -0.609 0.804
64 247882_at AT5G57785 unknown -0.604 0.028
65 252169_at AT3G50520 [Phosphoglycerate mutase family protein] -0.575 0.495
66 256563_at AT3G29780 RALFL27, ralf-like 27 -0.551 -0.177
67 262759_at AT1G10800 unknown -0.522 -0.292
68 249134_at AT5G43150 unknown -0.492 0.564
69 259195_at AT3G01730 unknown -0.478 -1.198
70 248972_at AT5G45010 ATDSS1(V), DSS1 homolog on chromosome V, DSS1(V), DSS1 homolog on chromosome V -0.477 1.583
71 251964_at AT3G53370 [S1FA-like DNA-binding protein] -0.465 0.353
72 246270_at AT4G36500 unknown -0.456 -0.236
73 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J -0.455 -0.281
74 251355_at AT3G61100 [Putative endonuclease or glycosyl hydrolase] -0.451 0.183
75 251517_at AT3G59370 [Vacuolar calcium-binding protein-related] -0.450 -0.681
76 245495_at AT4G16400 unknown -0.448 -0.092
77 253291_at AT4G33865 [Ribosomal protein S14p/S29e family protein] -0.444 0.732
78 267084_at AT2G41180 SIB2, sigma factor binding protein 2 -0.444 -0.066
79 265883_at AT2G42310 unknown -0.442 1.413
80 250800_at AT5G05370 [Cytochrome b-c1 complex, subunit 8 protein] -0.442 1.139
81 250454_at AT5G09830 BolA2, homolog of E.coli BolA 2 -0.437 -0.144
82 260549_at AT2G43535 [Scorpion toxin-like knottin superfamily protein] -0.428 0.047
83 247006_at AT5G67490 unknown -0.427 0.270
84 253636_at AT4G30500 unknown -0.425 0.468
85 252390_at AT3G47836 unknown -0.415 0.688
86 262876_at AT1G64750 ATDSS1(I), deletion of SUV3 suppressor 1(I), DSS1(I), deletion of SUV3 suppressor 1(I) -0.414 1.088
87 263673_at AT2G04800 unknown -0.413 -0.241
88 253629_at AT4G30450 [glycine-rich protein] -0.413 0.044
89 246479_at AT5G16060 [Cytochrome c oxidase biogenesis protein Cmc1-like] -0.410 0.913
90 255074_at AT4G09100 [RING/U-box superfamily protein] -0.410 -1.119
91 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 -0.407 0.215
92 250923_at AT5G03455 ACR2, ARSENATE REDUCTASE 2, ARATH;CDC25, AtACR2, CDC25 -0.403 0.294
93 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.397 -0.667
94 246582_at AT1G31750 [proline-rich family protein] -0.394 0.157
95 260683_at AT1G17560 HLL, HUELLENLOS -0.394 -0.202
96 253482_at AT4G31985 [Ribosomal protein L39 family protein] -0.392 0.654
97 260867_at AT1G43790 TED6, tracheary element differentiation-related 6 -0.389 -0.058
98 263785_at AT2G46390 SDH8, succinate dehydrogenase 8 -0.387 0.246
99 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR -0.379 -0.345
100 262558_at AT1G31335 unknown -0.379 0.676
101 266566_at AT2G24040 [Low temperature and salt responsive protein family] -0.376 1.324
102 248631_at AT5G49000 [Galactose oxidase/kelch repeat superfamily protein] -0.374 0.031
103 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.373 -0.260
104 253582_at AT4G30670 [Putative membrane lipoprotein] -0.366 0.078
105 258821_at AT3G07230 [wound-responsive protein-related] -0.364 1.044
106 255525_at AT4G02340 [alpha/beta-Hydrolases superfamily protein] -0.363 -0.073
107 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.361 -0.052
108 252502_at AT3G46900 COPT2, copper transporter 2 -0.358 -0.880
109 248746_at AT5G47890 [NADH-ubiquinone oxidoreductase B8 subunit, putative] -0.357 0.300
110 266796_at AT2G02880 [mucin-related] -0.353 1.117
111 255759_at AT1G16790 [ribosomal protein-related] -0.351 -0.003
112 260564_at AT2G43810 LSM6B, SM-like 6B -0.346 0.709
113 245334_at AT4G15800 RALFL33, ralf-like 33 -0.339 0.766
114 249863_at AT5G22950 VPS24.1 -0.338 -0.216
115 267178_at AT2G37750 unknown -0.336 0.005
116 258713_at AT3G09735 [S1FA-like DNA-binding protein] -0.333 1.548
117 256309_at AT1G30380 PSAK, photosystem I subunit K -0.324 0.893
118 247520_at AT5G61310 [Cytochrome c oxidase subunit Vc family protein] -0.324 0.007