4.0:Information of module
root hypoxia pWOL
In comparison with lateral root cap-columella pBRN2 0h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0007389 pattern specification process BP 2.952e-03
GO:0016126 sterol biosynthetic process BP 3.101e-03
GO:0046165 alcohol biosynthetic process BP 3.531e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006810 transport BP 2.133e-13
GO:0051234 establishment of localization BP 2.578e-13
GO:0051179 localization BP 2.031e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root hypoxia pWOL		 Log2 signal ratio
lateral root cap-columella pBRN2 0h BL
1 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 1.189 2.006
2 265025_at AT1G24575 unknown 0.706 -1.524
3 267645_at AT2G32860 BGLU33, beta glucosidase 33 0.698 -0.891
4 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 0.695 -0.204
5 248186_at AT5G53880 unknown 0.650 -3.367
6 264437_at AT1G27510 EX2, EXECUTER 2 0.629 0.847
7 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] 0.608 -3.196
8 252078_at AT3G51740 IMK2, inflorescence meristem receptor-like kinase 2 0.600 -0.450
9 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.582 1.250
10 255945_at AT5G28610 unknown 0.554 -2.350
11 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] 0.550 -2.117
12 253400_at AT4G32860 unknown 0.549 -2.787
13 253040_at AT4G37800 XTH7, xyloglucan endotransglucosylase/hydrolase 7 0.542 -0.243
14 263652_at AT1G04330 unknown 0.531 -3.055
15 266309_at AT2G27140 [HSP20-like chaperones superfamily protein] 0.518 -2.013
16 245845_at AT1G26150 AtPERK10, proline-rich extensin-like receptor kinase 10, PERK10, proline-rich extensin-like receptor kinase 10 0.504 0.208
17 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.492 2.823
18 266587_at AT2G14880 [SWIB/MDM2 domain superfamily protein] 0.482 -1.965
19 264495_at AT1G27380 RIC2, ROP-interactive CRIB motif-containing protein 2 0.478 -1.791
20 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.474 -2.302
21 265769_at AT2G48090 unknown 0.468 -3.169
22 262120_at AT1G02950 ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31, GSTF4, glutathione S-transferase F4 0.461 -2.258
23 259394_at AT1G06420 unknown 0.459 -0.006
24 248230_at AT5G53830 [VQ motif-containing protein] 0.454 -2.552
25 257064_at AT3G18260 [Reticulon family protein] 0.438 -2.070
26 249860_at AT5G22860 [Serine carboxypeptidase S28 family protein] 0.427 -2.271
27 255646_at AT4G00890 [proline-rich family protein] 0.425 -1.010
28 251131_at AT5G01190 LAC10, laccase 10 0.424 -1.470
29 262228_at AT1G68690 AtPERK9, proline-rich extensin-like receptor kinase 9, PERK9, proline-rich extensin-like receptor kinase 9 0.419 1.583
30 249992_at AT5G18560 PUCHI 0.415 -2.116
31 252128_at AT3G50870 GATA18, GATA TRANSCRIPTION FACTOR 18, HAN, HANABA TANARU, MNP, MONOPOLE 0.414 -0.847
32 250211_at AT5G13880 unknown 0.412 -2.630
33 246827_at AT5G26330 [Cupredoxin superfamily protein] 0.405 -1.310
34 265468_at AT2G37210 LOG3, LONELY GUY 3 0.404 -0.693
35 245758_at AT1G32240 KAN2, KANADI 2 0.382 0.492
36 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 0.382 -1.836
37 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 0.374 1.246
38 262778_at AT1G13050 unknown 0.372 -0.969
39 253419_at AT4G32780 [phosphoinositide binding] 0.368 -3.382
40 257054_at AT3G15353 ATMT3, MT3, metallothionein 3 0.367 -2.038
41 257583_at AT1G66480 [plastid movement impaired 2 (PMI2)] 0.358 1.321
42 266325_at AT2G46630 unknown 0.358 -1.656
43 265546_at AT2G28240 [ATP-dependent helicase family protein] 0.355 0.171
44 245353_at AT4G16000 unknown 0.348 -2.709
45 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.348 -3.197
46 259765_at AT1G64370 unknown 0.348 -2.773
47 265930_at AT2G18510 emb2444, embryo defective 2444 0.343 -1.469
48 260666_at AT1G19300 ATGATL1, GATL1, GALACTURONOSYLTRANSFERASE-LIKE 1, GLZ1, GAOLAOZHUANGREN 1, PARVUS, PARVUS 0.342 0.140
49 249915_at AT5G22870 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.340 -1.984
50 266954_at AT2G34530 unknown 0.339 -1.284
51 251243_at AT3G61870 unknown 0.337 -1.668
52 253571_at AT4G31000 [Calmodulin-binding protein] 0.337 -0.110
53 248696_at AT5G48360 [Actin-binding FH2 (formin homology 2) family protein] 0.335 0.022
54 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.334 -2.247
55 251162_at AT3G63300 FKD1, FORKED 1 0.333 0.037
56 256710_at AT3G30350 GLV3, GOLVEN 3, RGF4, root meristem growth factor 4 0.331 -1.156
57 258865_at AT3G03200 anac045, NAC domain containing protein 45, NAC045, NAC domain containing protein 45 0.329 -0.741
58 247625_at AT5G60200 TMO6, TARGET OF MONOPTEROS 6 0.329 -2.636
59 252321_at AT3G48510 unknown 0.329 0.320
60 265483_at AT2G15790 CYP40, CYCLOPHILIN 40, SQN, SQUINT 0.326 -0.921
61 258001_at AT3G28950 [AIG2-like (avirulence induced gene) family protein] 0.324 -0.403
62 252569_at AT3G45420 LecRK-I.4, L-type lectin receptor kinase I.4 0.323 0.586
63 256574_at AT3G14780 unknown 0.320 -1.338
64 249162_at AT5G42765 unknown 0.315 0.162
65 247830_at AT5G58530 [Glutaredoxin family protein] 0.310 1.063
66 245617_at AT4G14490 [SMAD/FHA domain-containing protein ] 0.310 -0.547
67 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.308 3.028
68 245990_at AT5G20640 unknown 0.308 -1.886
69 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 0.305 -3.767
70 249848_at AT5G23220 NIC3, nicotinamidase 3 0.302 2.051
71 259021_at AT3G07540 [Actin-binding FH2 (formin homology 2) family protein] 0.299 -1.060
72 266099_at AT2G38040 CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 0.297 0.020
73 266507_at AT2G47860 SETH6 0.294 -1.463
74 247425_at AT5G62550 unknown 0.292 -1.542
75 249441_at AT5G39730 [AIG2-like (avirulence induced gene) family protein] 0.291 -0.430
76 249034_at AT5G44160 AtIDD8, IDD8, INDETERMINATE DOMAIN 8, NUC, nutcracker 0.290 -0.999
77 256400_at AT3G06140 LUL4, LOG2-LIKE UBIQUITIN LIGASE4 0.286 0.218
78 257093_at AT3G20570 AtENODL9, ENODL9, early nodulin-like protein 9 0.285 -2.041
79 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.281 -2.607
80 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.275 3.525
81 266753_at AT2G46990 IAA20, indole-3-acetic acid inducible 20 0.275 0.602
82 261901_at AT1G80920 AtJ8, AtToc12, translocon at the outer envelope membrane of chloroplasts 12, DJC22, DNA J protein C22, J8, Toc12, translocon at the outer envelope membrane of chloroplasts 12 0.274 0.047
83 246261_at AT1G31810 AFH14, Formin Homology 14 0.274 -0.416
84 265100_at AT1G31010 OSB4, organellar single-stranded DNA binding protein 4 0.273 -0.628
85 252358_at AT3G48425 [DNAse I-like superfamily protein] 0.273 -0.892
86 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.511 2.737
87 251364_at AT3G61300 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.495 0.222
88 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] -0.367 3.574
89 251107_at AT5G01610 unknown -0.362 -0.678
90 253626_at AT4G30640 [RNI-like superfamily protein] -0.350 0.991
91 261691_at AT1G50060 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.342 3.312
92 247634_at AT5G60520 [Late embryogenesis abundant (LEA) protein-related] -0.338 2.357
93 256334_at AT1G72125 AtNPF5.13, NPF5.13, NRT1/ PTR family 5.13 -0.329 0.364
94 259351_at AT3G05150 [Major facilitator superfamily protein] -0.327 -1.254
95 265049_at AT1G52060 [Mannose-binding lectin superfamily protein] -0.303 3.480
96 265134_at AT1G51260 LPAT3, lysophosphatidyl acyltransferase 3 -0.298 3.250
97 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.296 2.862
98 247645_at AT5G60530 [late embryogenesis abundant protein-related / LEA protein-related] -0.294 3.728
99 253931_at AT4G26770 [Phosphatidate cytidylyltransferase family protein] -0.294 1.928
100 251255_at AT3G62280 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.285 2.496
101 256900_at AT3G24670 [Pectin lyase-like superfamily protein] -0.282 2.328
102 265048_at AT1G52050 [Mannose-binding lectin superfamily protein] -0.278 3.538
103 245001_at ATCG00220 PSBM, photosystem II reaction center protein M -0.268 2.603
104 261203_at AT1G12845 unknown -0.259 -0.270
105 245019_at ATCG00530 YCF10 -0.258 0.637
106 259337_at AT3G03720 CAT4, cationic amino acid transporter 4 -0.256 -0.592
107 251634_at AT3G57480 [zinc finger (C2H2 type, AN1-like) family protein] -0.255 0.966
108 267582_at AT2G41970 [Protein kinase superfamily protein] -0.252 -0.315
109 248763_at AT5G47550 [Cystatin/monellin superfamily protein] -0.250 2.106
110 245004_at ATCG00300 YCF9 -0.246 2.434
111 256250_at AT3G11320 [Nucleotide-sugar transporter family protein] -0.246 0.248
112 245015_at ATCG00490 RBCL -0.245 2.719
113 250273_at AT5G13010 EMB3011, embryo defective 3011 -0.244 0.025
114 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.243 0.347
115 247483_at AT5G62420 [NAD(P)-linked oxidoreductase superfamily protein] -0.242 1.411
116 261320_at AT1G53120 [RNA-binding S4 domain-containing protein] -0.240 0.159
117 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.237 -0.972
118 259134_at AT3G05390 unknown -0.235 2.798
119 249346_at AT5G40780 LHT1, lysine histidine transporter 1 -0.234 2.477
120 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.234 3.286
121 267439_at AT2G19060 [SGNH hydrolase-type esterase superfamily protein] -0.234 -0.862
122 267143_at AT2G38100 [proton-dependent oligopeptide transport (POT) family protein] -0.231 -0.866
123 245013_at ATCG00470 ATPE, ATP synthase epsilon chain -0.231 2.689
124 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 -0.230 -0.849
125 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor -0.226 -0.548
126 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 -0.224 -1.460
127 265175_at AT1G23480 ATCSLA03, cellulose synthase-like A3, ATCSLA3, CSLA03, CSLA03, cellulose synthase-like A3, CSLA3, CELLULOSE SYNTHASE-LIKE A3 -0.224 -1.311
128 261846_at AT1G11540 [Sulfite exporter TauE/SafE family protein] -0.219 1.763
129 246259_at AT1G31830 PUT2, POLYAMINE UPTAKE TRANSPORTER 2 -0.219 -0.314
130 264880_at AT1G61210 DWA3, DWD hypersensitive to ABA 3 -0.216 -0.037
131 253147_at AT4G35600 CST, CAST AWAY, CX32, CONNEXIN 32, Kin4, kinase 4 -0.215 1.158
132 267588_at AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] -0.215 -1.628
133 258844_at AT3G04740 ATMED14, ARABIDOPSIS MEDIATOR COMPONENTS 14, MED14, MEDIATOR COMPONENTS 14, SWP, STRUWWELPETER -0.213 -0.243
134 247356_at AT5G63800 BGAL6, beta-galactosidase 6, MUM2, MUCILAGE-MODIFIED 2 -0.213 -1.404
135 258760_at AT3G10780 [emp24/gp25L/p24 family/GOLD family protein] -0.212 -2.349
136 245553_at AT4G15370 BARS1, baruol synthase 1, PEN2, PENTACYCLIC TRITERPENE SYNTHASE 2 -0.212 2.217
137 260381_at AT1G73860 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.211 0.155
138 246581_at AT1G31760 [SWIB/MDM2 domain superfamily protein] -0.210 -1.003
139 258912_at AT3G06460 [GNS1/SUR4 membrane protein family] -0.209 2.485
140 258729_at AT3G11900 ANT1, aromatic and neutral transporter 1 -0.208 -1.170
141 266613_at AT2G14900 [Gibberellin-regulated family protein] -0.205 -2.456
142 258008_at AT3G19430 [late embryogenesis abundant protein-related / LEA protein-related] -0.205 2.558
143 253957_at AT4G26320 AGP13, arabinogalactan protein 13 -0.205 -1.538
144 257420_at AT1G77250 [RING/FYVE/PHD-type zinc finger family protein] -0.205 -0.010
145 252879_at AT4G39390 ATNST-KT1, A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, NST-K1, nucleotide sugar transporter-KT 1 -0.203 1.788
146 249406_at AT5G40210 UMAMIT42, Usually multiple acids move in and out Transporters 42 -0.201 0.741
147 249452_at AT5G39500 ERMO1, ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNL1, GNOM-like 1 -0.200 0.230
148 251983_at AT3G53210 UMAMIT6, Usually multiple acids move in and out Transporters 6 -0.200 0.981
149 266191_at AT2G39040 [Peroxidase superfamily protein] -0.199 2.349
150 261202_at AT1G12910 ATAN11, ANTHOCYANIN11, LWD1, LIGHT-REGULATED WD 1 -0.199 -0.057
151 264407_at AT1G10180 unknown -0.199 -0.453
152 249523_at AT5G38630 ACYB-1, cytochrome B561-1, CYB-1, cytochrome B561-1 -0.196 0.456
153 247277_at AT5G64420 [DNA polymerase V family] -0.196 -1.218
154 263243_at AT2G31350 GLX2-5, glyoxalase 2-5 -0.195 -0.061
155 263327_at AT2G15300 [Leucine-rich repeat protein kinase family protein] -0.194 -1.549
156 263456_at AT2G22125 CSI1, cellulose synthase-interactive protein 1, POM2, POM-POM 2 -0.193 0.207
157 254558_at AT4G19185 UMAMIT2, Usually multiple acids move in and out Transporters 2 -0.193 0.104
158 254774_at AT4G13440 [Calcium-binding EF-hand family protein] -0.192 -1.297
159 264907_at AT2G17280 [Phosphoglycerate mutase family protein] -0.191 1.921
160 253564_at AT4G31170 [Protein kinase superfamily protein] -0.190 0.352
161 263834_at AT2G40316 unknown -0.189 -0.487
162 254018_at AT4G26180 CoAc2, CoA Carrier 2 -0.189 -0.546
163 250102_at AT5G16590 LRR1, Leucine rich repeat protein 1 -0.188 -0.050
164 262904_at AT1G59725 [DNAJ heat shock family protein] -0.188 -0.473
165 263707_at AT1G09300 [Metallopeptidase M24 family protein] -0.187 -1.221
166 254041_at AT4G25830 [Uncharacterised protein family (UPF0497)] -0.186 -1.403
167 265424_at AT2G20780 [Major facilitator superfamily protein] -0.186 1.156
168 251053_at AT5G01490 ATCAX4, CAX4, cation exchanger 4 -0.186 1.485
169 265279_at AT2G28460 [Cysteine/Histidine-rich C1 domain family protein] -0.185 1.056