4.0:Information of module
root hypoxia pWOL
In comparison with root hypoxia pGL2 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0007389 pattern specification process BP 2.952e-03
GO:0016126 sterol biosynthetic process BP 3.101e-03
GO:0046165 alcohol biosynthetic process BP 3.531e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006810 transport BP 2.133e-13
GO:0051234 establishment of localization BP 2.578e-13
GO:0051179 localization BP 2.031e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root hypoxia pWOL		 Log2 signal ratio
root hypoxia pGL2
1 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 1.189 1.067
2 265025_at AT1G24575 unknown 0.706 0.855
3 267645_at AT2G32860 BGLU33, beta glucosidase 33 0.698 0.210
4 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 0.695 0.569
5 248186_at AT5G53880 unknown 0.650 0.346
6 264437_at AT1G27510 EX2, EXECUTER 2 0.629 0.486
7 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] 0.608 1.016
8 252078_at AT3G51740 IMK2, inflorescence meristem receptor-like kinase 2 0.600 0.539
9 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.582 0.528
10 255945_at AT5G28610 unknown 0.554 0.286
11 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] 0.550 0.365
12 253400_at AT4G32860 unknown 0.549 0.332
13 253040_at AT4G37800 XTH7, xyloglucan endotransglucosylase/hydrolase 7 0.542 0.510
14 263652_at AT1G04330 unknown 0.531 0.655
15 266309_at AT2G27140 [HSP20-like chaperones superfamily protein] 0.518 -0.018
16 245845_at AT1G26150 AtPERK10, proline-rich extensin-like receptor kinase 10, PERK10, proline-rich extensin-like receptor kinase 10 0.504 0.614
17 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.492 0.730
18 266587_at AT2G14880 [SWIB/MDM2 domain superfamily protein] 0.482 0.078
19 264495_at AT1G27380 RIC2, ROP-interactive CRIB motif-containing protein 2 0.478 -0.130
20 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.474 0.170
21 265769_at AT2G48090 unknown 0.468 0.735
22 262120_at AT1G02950 ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31, GSTF4, glutathione S-transferase F4 0.461 0.094
23 259394_at AT1G06420 unknown 0.459 0.173
24 248230_at AT5G53830 [VQ motif-containing protein] 0.454 0.649
25 257064_at AT3G18260 [Reticulon family protein] 0.438 0.010
26 249860_at AT5G22860 [Serine carboxypeptidase S28 family protein] 0.427 0.316
27 255646_at AT4G00890 [proline-rich family protein] 0.425 0.223
28 251131_at AT5G01190 LAC10, laccase 10 0.424 -0.050
29 262228_at AT1G68690 AtPERK9, proline-rich extensin-like receptor kinase 9, PERK9, proline-rich extensin-like receptor kinase 9 0.419 0.429
30 249992_at AT5G18560 PUCHI 0.415 -0.081
31 252128_at AT3G50870 GATA18, GATA TRANSCRIPTION FACTOR 18, HAN, HANABA TANARU, MNP, MONOPOLE 0.414 -0.087
32 250211_at AT5G13880 unknown 0.412 0.063
33 246827_at AT5G26330 [Cupredoxin superfamily protein] 0.405 0.084
34 265468_at AT2G37210 LOG3, LONELY GUY 3 0.404 0.253
35 245758_at AT1G32240 KAN2, KANADI 2 0.382 0.321
36 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 0.382 0.207
37 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 0.374 -0.096
38 262778_at AT1G13050 unknown 0.372 0.450
39 253419_at AT4G32780 [phosphoinositide binding] 0.368 0.099
40 257054_at AT3G15353 ATMT3, MT3, metallothionein 3 0.367 0.436
41 257583_at AT1G66480 [plastid movement impaired 2 (PMI2)] 0.358 0.044
42 266325_at AT2G46630 unknown 0.358 0.479
43 265546_at AT2G28240 [ATP-dependent helicase family protein] 0.355 0.528
44 245353_at AT4G16000 unknown 0.348 0.208
45 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.348 0.163
46 259765_at AT1G64370 unknown 0.348 0.490
47 265930_at AT2G18510 emb2444, embryo defective 2444 0.343 0.105
48 260666_at AT1G19300 ATGATL1, GATL1, GALACTURONOSYLTRANSFERASE-LIKE 1, GLZ1, GAOLAOZHUANGREN 1, PARVUS, PARVUS 0.342 0.181
49 249915_at AT5G22870 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.340 -0.051
50 266954_at AT2G34530 unknown 0.339 0.075
51 251243_at AT3G61870 unknown 0.337 0.324
52 253571_at AT4G31000 [Calmodulin-binding protein] 0.337 0.433
53 248696_at AT5G48360 [Actin-binding FH2 (formin homology 2) family protein] 0.335 0.324
54 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.334 -0.034
55 251162_at AT3G63300 FKD1, FORKED 1 0.333 0.252
56 256710_at AT3G30350 GLV3, GOLVEN 3, RGF4, root meristem growth factor 4 0.331 0.131
57 258865_at AT3G03200 anac045, NAC domain containing protein 45, NAC045, NAC domain containing protein 45 0.329 -0.076
58 247625_at AT5G60200 TMO6, TARGET OF MONOPTEROS 6 0.329 0.185
59 252321_at AT3G48510 unknown 0.329 0.119
60 265483_at AT2G15790 CYP40, CYCLOPHILIN 40, SQN, SQUINT 0.326 0.025
61 258001_at AT3G28950 [AIG2-like (avirulence induced gene) family protein] 0.324 0.001
62 252569_at AT3G45420 LecRK-I.4, L-type lectin receptor kinase I.4 0.323 0.207
63 256574_at AT3G14780 unknown 0.320 -0.113
64 249162_at AT5G42765 unknown 0.315 0.266
65 247830_at AT5G58530 [Glutaredoxin family protein] 0.310 0.068
66 245617_at AT4G14490 [SMAD/FHA domain-containing protein ] 0.310 0.291
67 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.308 0.592
68 245990_at AT5G20640 unknown 0.308 0.533
69 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 0.305 0.165
70 249848_at AT5G23220 NIC3, nicotinamidase 3 0.302 0.055
71 259021_at AT3G07540 [Actin-binding FH2 (formin homology 2) family protein] 0.299 0.234
72 266099_at AT2G38040 CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 0.297 0.214
73 266507_at AT2G47860 SETH6 0.294 0.189
74 247425_at AT5G62550 unknown 0.292 -0.000
75 249441_at AT5G39730 [AIG2-like (avirulence induced gene) family protein] 0.291 0.276
76 249034_at AT5G44160 AtIDD8, IDD8, INDETERMINATE DOMAIN 8, NUC, nutcracker 0.290 -0.075
77 256400_at AT3G06140 LUL4, LOG2-LIKE UBIQUITIN LIGASE4 0.286 0.358
78 257093_at AT3G20570 AtENODL9, ENODL9, early nodulin-like protein 9 0.285 0.034
79 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.281 0.045
80 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.275 0.422
81 266753_at AT2G46990 IAA20, indole-3-acetic acid inducible 20 0.275 -0.020
82 261901_at AT1G80920 AtJ8, AtToc12, translocon at the outer envelope membrane of chloroplasts 12, DJC22, DNA J protein C22, J8, Toc12, translocon at the outer envelope membrane of chloroplasts 12 0.274 0.006
83 246261_at AT1G31810 AFH14, Formin Homology 14 0.274 0.246
84 265100_at AT1G31010 OSB4, organellar single-stranded DNA binding protein 4 0.273 -0.119
85 252358_at AT3G48425 [DNAse I-like superfamily protein] 0.273 0.029
86 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.511 -0.582
87 251364_at AT3G61300 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.495 -0.142
88 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] -0.367 -0.640
89 251107_at AT5G01610 unknown -0.362 -0.075
90 253626_at AT4G30640 [RNI-like superfamily protein] -0.350 -0.220
91 261691_at AT1G50060 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.342 -0.547
92 247634_at AT5G60520 [Late embryogenesis abundant (LEA) protein-related] -0.338 -0.284
93 256334_at AT1G72125 AtNPF5.13, NPF5.13, NRT1/ PTR family 5.13 -0.329 -0.188
94 259351_at AT3G05150 [Major facilitator superfamily protein] -0.327 -0.252
95 265049_at AT1G52060 [Mannose-binding lectin superfamily protein] -0.303 -0.374
96 265134_at AT1G51260 LPAT3, lysophosphatidyl acyltransferase 3 -0.298 -0.227
97 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.296 -0.050
98 247645_at AT5G60530 [late embryogenesis abundant protein-related / LEA protein-related] -0.294 -0.289
99 253931_at AT4G26770 [Phosphatidate cytidylyltransferase family protein] -0.294 -0.231
100 251255_at AT3G62280 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.285 -0.205
101 256900_at AT3G24670 [Pectin lyase-like superfamily protein] -0.282 -0.232
102 265048_at AT1G52050 [Mannose-binding lectin superfamily protein] -0.278 -0.420
103 245001_at ATCG00220 PSBM, photosystem II reaction center protein M -0.268 -0.370
104 261203_at AT1G12845 unknown -0.259 -0.177
105 245019_at ATCG00530 YCF10 -0.258 -0.140
106 259337_at AT3G03720 CAT4, cationic amino acid transporter 4 -0.256 -0.045
107 251634_at AT3G57480 [zinc finger (C2H2 type, AN1-like) family protein] -0.255 -0.074
108 267582_at AT2G41970 [Protein kinase superfamily protein] -0.252 -0.344
109 248763_at AT5G47550 [Cystatin/monellin superfamily protein] -0.250 -0.052
110 245004_at ATCG00300 YCF9 -0.246 -0.061
111 256250_at AT3G11320 [Nucleotide-sugar transporter family protein] -0.246 -0.199
112 245015_at ATCG00490 RBCL -0.245 -0.124
113 250273_at AT5G13010 EMB3011, embryo defective 3011 -0.244 0.048
114 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.243 -0.326
115 247483_at AT5G62420 [NAD(P)-linked oxidoreductase superfamily protein] -0.242 -0.179
116 261320_at AT1G53120 [RNA-binding S4 domain-containing protein] -0.240 0.013
117 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.237 -0.228
118 259134_at AT3G05390 unknown -0.235 -0.163
119 249346_at AT5G40780 LHT1, lysine histidine transporter 1 -0.234 -0.119
120 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.234 -0.168
121 267439_at AT2G19060 [SGNH hydrolase-type esterase superfamily protein] -0.234 -0.150
122 267143_at AT2G38100 [proton-dependent oligopeptide transport (POT) family protein] -0.231 -0.168
123 245013_at ATCG00470 ATPE, ATP synthase epsilon chain -0.231 -0.071
124 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 -0.230 -0.088
125 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor -0.226 -0.086
126 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 -0.224 -0.089
127 265175_at AT1G23480 ATCSLA03, cellulose synthase-like A3, ATCSLA3, CSLA03, CSLA03, cellulose synthase-like A3, CSLA3, CELLULOSE SYNTHASE-LIKE A3 -0.224 -0.091
128 261846_at AT1G11540 [Sulfite exporter TauE/SafE family protein] -0.219 -0.125
129 246259_at AT1G31830 PUT2, POLYAMINE UPTAKE TRANSPORTER 2 -0.219 -0.089
130 264880_at AT1G61210 DWA3, DWD hypersensitive to ABA 3 -0.216 -0.056
131 253147_at AT4G35600 CST, CAST AWAY, CX32, CONNEXIN 32, Kin4, kinase 4 -0.215 -0.136
132 267588_at AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] -0.215 -0.132
133 258844_at AT3G04740 ATMED14, ARABIDOPSIS MEDIATOR COMPONENTS 14, MED14, MEDIATOR COMPONENTS 14, SWP, STRUWWELPETER -0.213 -0.117
134 247356_at AT5G63800 BGAL6, beta-galactosidase 6, MUM2, MUCILAGE-MODIFIED 2 -0.213 -0.100
135 258760_at AT3G10780 [emp24/gp25L/p24 family/GOLD family protein] -0.212 -0.184
136 245553_at AT4G15370 BARS1, baruol synthase 1, PEN2, PENTACYCLIC TRITERPENE SYNTHASE 2 -0.212 -0.229
137 260381_at AT1G73860 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.211 -0.170
138 246581_at AT1G31760 [SWIB/MDM2 domain superfamily protein] -0.210 -0.185
139 258912_at AT3G06460 [GNS1/SUR4 membrane protein family] -0.209 -0.257
140 258729_at AT3G11900 ANT1, aromatic and neutral transporter 1 -0.208 -0.188
141 266613_at AT2G14900 [Gibberellin-regulated family protein] -0.205 -0.229
142 258008_at AT3G19430 [late embryogenesis abundant protein-related / LEA protein-related] -0.205 -0.232
143 253957_at AT4G26320 AGP13, arabinogalactan protein 13 -0.205 -0.384
144 257420_at AT1G77250 [RING/FYVE/PHD-type zinc finger family protein] -0.205 -0.036
145 252879_at AT4G39390 ATNST-KT1, A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, NST-K1, nucleotide sugar transporter-KT 1 -0.203 -0.209
146 249406_at AT5G40210 UMAMIT42, Usually multiple acids move in and out Transporters 42 -0.201 -0.091
147 249452_at AT5G39500 ERMO1, ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNL1, GNOM-like 1 -0.200 -0.076
148 251983_at AT3G53210 UMAMIT6, Usually multiple acids move in and out Transporters 6 -0.200 -0.187
149 266191_at AT2G39040 [Peroxidase superfamily protein] -0.199 -0.203
150 261202_at AT1G12910 ATAN11, ANTHOCYANIN11, LWD1, LIGHT-REGULATED WD 1 -0.199 -0.078
151 264407_at AT1G10180 unknown -0.199 -0.023
152 249523_at AT5G38630 ACYB-1, cytochrome B561-1, CYB-1, cytochrome B561-1 -0.196 -0.131
153 247277_at AT5G64420 [DNA polymerase V family] -0.196 -0.069
154 263243_at AT2G31350 GLX2-5, glyoxalase 2-5 -0.195 -0.121
155 263327_at AT2G15300 [Leucine-rich repeat protein kinase family protein] -0.194 -0.132
156 263456_at AT2G22125 CSI1, cellulose synthase-interactive protein 1, POM2, POM-POM 2 -0.193 -0.053
157 254558_at AT4G19185 UMAMIT2, Usually multiple acids move in and out Transporters 2 -0.193 -0.074
158 254774_at AT4G13440 [Calcium-binding EF-hand family protein] -0.192 -0.138
159 264907_at AT2G17280 [Phosphoglycerate mutase family protein] -0.191 -0.181
160 253564_at AT4G31170 [Protein kinase superfamily protein] -0.190 0.025
161 263834_at AT2G40316 unknown -0.189 -0.121
162 254018_at AT4G26180 CoAc2, CoA Carrier 2 -0.189 0.031
163 250102_at AT5G16590 LRR1, Leucine rich repeat protein 1 -0.188 -0.232
164 262904_at AT1G59725 [DNAJ heat shock family protein] -0.188 -0.143
165 263707_at AT1G09300 [Metallopeptidase M24 family protein] -0.187 -0.051
166 254041_at AT4G25830 [Uncharacterised protein family (UPF0497)] -0.186 -0.212
167 265424_at AT2G20780 [Major facilitator superfamily protein] -0.186 -0.004
168 251053_at AT5G01490 ATCAX4, CAX4, cation exchanger 4 -0.186 -0.125
169 265279_at AT2G28460 [Cysteine/Histidine-rich C1 domain family protein] -0.185 -0.130