4.0:Information of module
root hypoxia pWOL
In comparison with 2hr continuous KNO3 and MSX and Gln PeR cell help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0007389 pattern specification process BP 2.952e-03
GO:0016126 sterol biosynthetic process BP 3.101e-03
GO:0046165 alcohol biosynthetic process BP 3.531e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006810 transport BP 2.133e-13
GO:0051234 establishment of localization BP 2.578e-13
GO:0051179 localization BP 2.031e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root hypoxia pWOL		 Log2 signal ratio
2hr continuous KNO3 and MSX and Gln PeR cell
1 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 1.189 -0.069
2 265025_at AT1G24575 unknown 0.706 0.112
3 267645_at AT2G32860 BGLU33, beta glucosidase 33 0.698 0.069
4 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 0.695 0.162
5 248186_at AT5G53880 unknown 0.650 0.316
6 264437_at AT1G27510 EX2, EXECUTER 2 0.629 -0.081
7 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] 0.608 0.264
8 252078_at AT3G51740 IMK2, inflorescence meristem receptor-like kinase 2 0.600 -0.015
9 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.582 0.026
10 255945_at AT5G28610 unknown 0.554 0.114
11 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] 0.550 -0.079
12 253400_at AT4G32860 unknown 0.549 0.129
13 253040_at AT4G37800 XTH7, xyloglucan endotransglucosylase/hydrolase 7 0.542 0.130
14 263652_at AT1G04330 unknown 0.531 0.054
15 266309_at AT2G27140 [HSP20-like chaperones superfamily protein] 0.518 0.185
16 245845_at AT1G26150 AtPERK10, proline-rich extensin-like receptor kinase 10, PERK10, proline-rich extensin-like receptor kinase 10 0.504 -0.360
17 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.492 -0.034
18 266587_at AT2G14880 [SWIB/MDM2 domain superfamily protein] 0.482 0.224
19 264495_at AT1G27380 RIC2, ROP-interactive CRIB motif-containing protein 2 0.478 0.077
20 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.474 0.143
21 265769_at AT2G48090 unknown 0.468 0.068
22 262120_at AT1G02950 ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31, GSTF4, glutathione S-transferase F4 0.461 0.136
23 259394_at AT1G06420 unknown 0.459 -0.434
24 248230_at AT5G53830 [VQ motif-containing protein] 0.454 0.121
25 257064_at AT3G18260 [Reticulon family protein] 0.438 0.131
26 249860_at AT5G22860 [Serine carboxypeptidase S28 family protein] 0.427 0.016
27 255646_at AT4G00890 [proline-rich family protein] 0.425 0.209
28 251131_at AT5G01190 LAC10, laccase 10 0.424 0.089
29 262228_at AT1G68690 AtPERK9, proline-rich extensin-like receptor kinase 9, PERK9, proline-rich extensin-like receptor kinase 9 0.419 -0.515
30 249992_at AT5G18560 PUCHI 0.415 0.077
31 252128_at AT3G50870 GATA18, GATA TRANSCRIPTION FACTOR 18, HAN, HANABA TANARU, MNP, MONOPOLE 0.414 0.184
32 250211_at AT5G13880 unknown 0.412 0.378
33 246827_at AT5G26330 [Cupredoxin superfamily protein] 0.405 0.011
34 265468_at AT2G37210 LOG3, LONELY GUY 3 0.404 0.109
35 245758_at AT1G32240 KAN2, KANADI 2 0.382 -0.101
36 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 0.382 0.240
37 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 0.374 0.055
38 262778_at AT1G13050 unknown 0.372 0.086
39 253419_at AT4G32780 [phosphoinositide binding] 0.368 -0.163
40 257054_at AT3G15353 ATMT3, MT3, metallothionein 3 0.367 0.180
41 257583_at AT1G66480 [plastid movement impaired 2 (PMI2)] 0.358 -0.008
42 266325_at AT2G46630 unknown 0.358 0.045
43 265546_at AT2G28240 [ATP-dependent helicase family protein] 0.355 -0.053
44 245353_at AT4G16000 unknown 0.348 0.571
45 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.348 0.004
46 259765_at AT1G64370 unknown 0.348 0.197
47 265930_at AT2G18510 emb2444, embryo defective 2444 0.343 -0.008
48 260666_at AT1G19300 ATGATL1, GATL1, GALACTURONOSYLTRANSFERASE-LIKE 1, GLZ1, GAOLAOZHUANGREN 1, PARVUS, PARVUS 0.342 -0.097
49 249915_at AT5G22870 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.340 -0.033
50 266954_at AT2G34530 unknown 0.339 0.002
51 251243_at AT3G61870 unknown 0.337 0.146
52 253571_at AT4G31000 [Calmodulin-binding protein] 0.337 -0.280
53 248696_at AT5G48360 [Actin-binding FH2 (formin homology 2) family protein] 0.335 0.168
54 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.334 0.364
55 251162_at AT3G63300 FKD1, FORKED 1 0.333 -0.013
56 256710_at AT3G30350 GLV3, GOLVEN 3, RGF4, root meristem growth factor 4 0.331 0.023
57 258865_at AT3G03200 anac045, NAC domain containing protein 45, NAC045, NAC domain containing protein 45 0.329 -0.020
58 247625_at AT5G60200 TMO6, TARGET OF MONOPTEROS 6 0.329 0.106
59 252321_at AT3G48510 unknown 0.329 0.117
60 265483_at AT2G15790 CYP40, CYCLOPHILIN 40, SQN, SQUINT 0.326 0.107
61 258001_at AT3G28950 [AIG2-like (avirulence induced gene) family protein] 0.324 0.033
62 252569_at AT3G45420 LecRK-I.4, L-type lectin receptor kinase I.4 0.323 -0.096
63 256574_at AT3G14780 unknown 0.320 0.050
64 249162_at AT5G42765 unknown 0.315 0.176
65 247830_at AT5G58530 [Glutaredoxin family protein] 0.310 -0.032
66 245617_at AT4G14490 [SMAD/FHA domain-containing protein ] 0.310 -0.014
67 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.308 0.153
68 245990_at AT5G20640 unknown 0.308 -0.153
69 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 0.305 0.244
70 249848_at AT5G23220 NIC3, nicotinamidase 3 0.302 -0.281
71 259021_at AT3G07540 [Actin-binding FH2 (formin homology 2) family protein] 0.299 -0.093
72 266099_at AT2G38040 CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 0.297 -0.067
73 266507_at AT2G47860 SETH6 0.294 -0.279
74 247425_at AT5G62550 unknown 0.292 0.010
75 249441_at AT5G39730 [AIG2-like (avirulence induced gene) family protein] 0.291 -0.090
76 249034_at AT5G44160 AtIDD8, IDD8, INDETERMINATE DOMAIN 8, NUC, nutcracker 0.290 -0.239
77 256400_at AT3G06140 LUL4, LOG2-LIKE UBIQUITIN LIGASE4 0.286 -0.050
78 257093_at AT3G20570 AtENODL9, ENODL9, early nodulin-like protein 9 0.285 0.065
79 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.281 0.523
80 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.275 -0.148
81 266753_at AT2G46990 IAA20, indole-3-acetic acid inducible 20 0.275 0.051
82 261901_at AT1G80920 AtJ8, AtToc12, translocon at the outer envelope membrane of chloroplasts 12, DJC22, DNA J protein C22, J8, Toc12, translocon at the outer envelope membrane of chloroplasts 12 0.274 0.079
83 246261_at AT1G31810 AFH14, Formin Homology 14 0.274 -0.148
84 265100_at AT1G31010 OSB4, organellar single-stranded DNA binding protein 4 0.273 0.111
85 252358_at AT3G48425 [DNAse I-like superfamily protein] 0.273 0.180
86 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.511 0.023
87 251364_at AT3G61300 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.495 0.214
88 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] -0.367 0.676
89 251107_at AT5G01610 unknown -0.362 -0.231
90 253626_at AT4G30640 [RNI-like superfamily protein] -0.350 -0.089
91 261691_at AT1G50060 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.342 0.627
92 247634_at AT5G60520 [Late embryogenesis abundant (LEA) protein-related] -0.338 0.212
93 256334_at AT1G72125 AtNPF5.13, NPF5.13, NRT1/ PTR family 5.13 -0.329 -0.259
94 259351_at AT3G05150 [Major facilitator superfamily protein] -0.327 -0.264
95 265049_at AT1G52060 [Mannose-binding lectin superfamily protein] -0.303 0.512
96 265134_at AT1G51260 LPAT3, lysophosphatidyl acyltransferase 3 -0.298 0.191
97 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.296 0.004
98 247645_at AT5G60530 [late embryogenesis abundant protein-related / LEA protein-related] -0.294 0.526
99 253931_at AT4G26770 [Phosphatidate cytidylyltransferase family protein] -0.294 0.107
100 251255_at AT3G62280 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.285 -0.268
101 256900_at AT3G24670 [Pectin lyase-like superfamily protein] -0.282 -0.186
102 265048_at AT1G52050 [Mannose-binding lectin superfamily protein] -0.278 0.520
103 245001_at ATCG00220 PSBM, photosystem II reaction center protein M -0.268 0.094
104 261203_at AT1G12845 unknown -0.259 0.024
105 245019_at ATCG00530 YCF10 -0.258 -0.163
106 259337_at AT3G03720 CAT4, cationic amino acid transporter 4 -0.256 -0.199
107 251634_at AT3G57480 [zinc finger (C2H2 type, AN1-like) family protein] -0.255 -0.092
108 267582_at AT2G41970 [Protein kinase superfamily protein] -0.252 -0.195
109 248763_at AT5G47550 [Cystatin/monellin superfamily protein] -0.250 0.095
110 245004_at ATCG00300 YCF9 -0.246 -0.018
111 256250_at AT3G11320 [Nucleotide-sugar transporter family protein] -0.246 -0.235
112 245015_at ATCG00490 RBCL -0.245 -0.285
113 250273_at AT5G13010 EMB3011, embryo defective 3011 -0.244 -0.220
114 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.243 -0.419
115 247483_at AT5G62420 [NAD(P)-linked oxidoreductase superfamily protein] -0.242 0.053
116 261320_at AT1G53120 [RNA-binding S4 domain-containing protein] -0.240 0.072
117 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.237 -0.007
118 259134_at AT3G05390 unknown -0.235 -0.025
119 249346_at AT5G40780 LHT1, lysine histidine transporter 1 -0.234 -0.362
120 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.234 0.275
121 267439_at AT2G19060 [SGNH hydrolase-type esterase superfamily protein] -0.234 -0.028
122 267143_at AT2G38100 [proton-dependent oligopeptide transport (POT) family protein] -0.231 -0.024
123 245013_at ATCG00470 ATPE, ATP synthase epsilon chain -0.231 -0.008
124 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 -0.230 -0.509
125 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor -0.226 -0.295
126 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 -0.224 0.237
127 265175_at AT1G23480 ATCSLA03, cellulose synthase-like A3, ATCSLA3, CSLA03, CSLA03, cellulose synthase-like A3, CSLA3, CELLULOSE SYNTHASE-LIKE A3 -0.224 -0.151
128 261846_at AT1G11540 [Sulfite exporter TauE/SafE family protein] -0.219 -0.108
129 246259_at AT1G31830 PUT2, POLYAMINE UPTAKE TRANSPORTER 2 -0.219 -0.313
130 264880_at AT1G61210 DWA3, DWD hypersensitive to ABA 3 -0.216 0.146
131 253147_at AT4G35600 CST, CAST AWAY, CX32, CONNEXIN 32, Kin4, kinase 4 -0.215 -0.225
132 267588_at AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] -0.215 0.058
133 258844_at AT3G04740 ATMED14, ARABIDOPSIS MEDIATOR COMPONENTS 14, MED14, MEDIATOR COMPONENTS 14, SWP, STRUWWELPETER -0.213 -0.315
134 247356_at AT5G63800 BGAL6, beta-galactosidase 6, MUM2, MUCILAGE-MODIFIED 2 -0.213 -0.189
135 258760_at AT3G10780 [emp24/gp25L/p24 family/GOLD family protein] -0.212 -0.023
136 245553_at AT4G15370 BARS1, baruol synthase 1, PEN2, PENTACYCLIC TRITERPENE SYNTHASE 2 -0.212 0.006
137 260381_at AT1G73860 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.211 0.127
138 246581_at AT1G31760 [SWIB/MDM2 domain superfamily protein] -0.210 0.175
139 258912_at AT3G06460 [GNS1/SUR4 membrane protein family] -0.209 0.226
140 258729_at AT3G11900 ANT1, aromatic and neutral transporter 1 -0.208 -0.073
141 266613_at AT2G14900 [Gibberellin-regulated family protein] -0.205 -0.000
142 258008_at AT3G19430 [late embryogenesis abundant protein-related / LEA protein-related] -0.205 0.303
143 253957_at AT4G26320 AGP13, arabinogalactan protein 13 -0.205 0.073
144 257420_at AT1G77250 [RING/FYVE/PHD-type zinc finger family protein] -0.205 -0.076
145 252879_at AT4G39390 ATNST-KT1, A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, NST-K1, nucleotide sugar transporter-KT 1 -0.203 0.042
146 249406_at AT5G40210 UMAMIT42, Usually multiple acids move in and out Transporters 42 -0.201 -0.005
147 249452_at AT5G39500 ERMO1, ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNL1, GNOM-like 1 -0.200 -0.058
148 251983_at AT3G53210 UMAMIT6, Usually multiple acids move in and out Transporters 6 -0.200 -0.074
149 266191_at AT2G39040 [Peroxidase superfamily protein] -0.199 0.274
150 261202_at AT1G12910 ATAN11, ANTHOCYANIN11, LWD1, LIGHT-REGULATED WD 1 -0.199 0.050
151 264407_at AT1G10180 unknown -0.199 -0.064
152 249523_at AT5G38630 ACYB-1, cytochrome B561-1, CYB-1, cytochrome B561-1 -0.196 -0.038
153 247277_at AT5G64420 [DNA polymerase V family] -0.196 0.019
154 263243_at AT2G31350 GLX2-5, glyoxalase 2-5 -0.195 -0.062
155 263327_at AT2G15300 [Leucine-rich repeat protein kinase family protein] -0.194 0.022
156 263456_at AT2G22125 CSI1, cellulose synthase-interactive protein 1, POM2, POM-POM 2 -0.193 -0.292
157 254558_at AT4G19185 UMAMIT2, Usually multiple acids move in and out Transporters 2 -0.193 -0.032
158 254774_at AT4G13440 [Calcium-binding EF-hand family protein] -0.192 -0.095
159 264907_at AT2G17280 [Phosphoglycerate mutase family protein] -0.191 -0.199
160 253564_at AT4G31170 [Protein kinase superfamily protein] -0.190 -0.155
161 263834_at AT2G40316 unknown -0.189 -0.123
162 254018_at AT4G26180 CoAc2, CoA Carrier 2 -0.189 -0.136
163 250102_at AT5G16590 LRR1, Leucine rich repeat protein 1 -0.188 -0.125
164 262904_at AT1G59725 [DNAJ heat shock family protein] -0.188 0.017
165 263707_at AT1G09300 [Metallopeptidase M24 family protein] -0.187 0.166
166 254041_at AT4G25830 [Uncharacterised protein family (UPF0497)] -0.186 0.325
167 265424_at AT2G20780 [Major facilitator superfamily protein] -0.186 -0.058
168 251053_at AT5G01490 ATCAX4, CAX4, cation exchanger 4 -0.186 -0.115
169 265279_at AT2G28460 [Cysteine/Histidine-rich C1 domain family protein] -0.185 -0.380