4.0:Information of module
root hypoxia pSHR
In comparison with root epidermis and lateral root cap -S help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044036 cell wall macromolecule metabolic proces... BP 2.546e-08
GO:0010383 cell wall polysaccharide metabolic proce... BP 2.920e-06
GO:0010413 glucuronoxylan metabolic process BP 2.932e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0071705 nitrogen compound transport BP 2.762e-16
GO:0044699 single-organism process BP 3.316e-16
GO:0006810 transport BP 1.091e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root hypoxia pSHR		 Log2 signal ratio
root epidermis and lateral root cap -S
1 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 1.158 -0.032
2 248186_at AT5G53880 unknown 0.784 0.058
3 256131_at AT1G13600 AtbZIP58, basic leucine-zipper 58, bZIP58, basic leucine-zipper 58 0.700 -0.063
4 254217_at AT4G23720 unknown 0.616 -0.015
5 265468_at AT2G37210 LOG3, LONELY GUY 3 0.580 0.278
6 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] 0.573 -0.282
7 262283_at AT1G68590 PSRP3/1, plastid-specific ribosomal protein 3/1 0.571 -0.058
8 264437_at AT1G27510 EX2, EXECUTER 2 0.568 0.083
9 258782_at AT3G11750 FOLB1 0.550 0.144
10 253040_at AT4G37800 XTH7, xyloglucan endotransglucosylase/hydrolase 7 0.548 -0.041
11 248230_at AT5G53830 [VQ motif-containing protein] 0.538 -0.071
12 245845_at AT1G26150 AtPERK10, proline-rich extensin-like receptor kinase 10, PERK10, proline-rich extensin-like receptor kinase 10 0.520 -0.119
13 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.509 0.277
14 255028_at AT4G09890 unknown 0.507 0.153
15 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.484 0.159
16 265025_at AT1G24575 unknown 0.481 -0.084
17 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 0.479 0.176
18 249860_at AT5G22860 [Serine carboxypeptidase S28 family protein] 0.476 0.068
19 257398_at AT2G01990 unknown 0.474 -0.115
20 251916_at AT3G53960 [Major facilitator superfamily protein] 0.457 -0.074
21 249465_at AT5G39720 AIG2L, avirulence induced gene 2 like protein 0.453 -0.105
22 266309_at AT2G27140 [HSP20-like chaperones superfamily protein] 0.444 0.422
23 249992_at AT5G18560 PUCHI 0.437 0.070
24 255651_at AT4G00940 AtDOF4.1, DOF4.1, DNA binding with one finger 4.1, ITD1, INTERCELLULAR TRAFFICKING DOF 1 0.434 0.145
25 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.432 0.027
26 247773_at AT5G58630 TRM31, TON1 Recruiting Motif 31 0.431 -0.004
27 254632_at AT4G18630 unknown 0.424 -0.545
28 251646_at AT3G57780 unknown 0.423 0.107
29 254240_at AT4G23496 SP1L5, SPIRAL1-like5 0.422 -0.086
30 262120_at AT1G02950 ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31, GSTF4, glutathione S-transferase F4 0.419 0.227
31 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] 0.418 0.007
32 251940_at AT3G53450 LOG4, LONELY GUY 4 0.401 0.249
33 252128_at AT3G50870 GATA18, GATA TRANSCRIPTION FACTOR 18, HAN, HANABA TANARU, MNP, MONOPOLE 0.398 0.259
34 250927_at AT5G03270 LOG6, LONELY GUY 6 0.397 0.033
35 256447_at AT1G33440 AtNPF4.4, NPF4.4, NRT1/ PTR family 4.4 0.389 0.045
36 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.384 -0.081
37 261840_at AT1G16070 AtTLP8, tubby like protein 8, TLP8, tubby like protein 8 0.384 0.305
38 263709_at AT1G09310 unknown 0.383 0.311
39 247747_at AT5G59000 [RING/FYVE/PHD zinc finger superfamily protein] 0.380 -0.104
40 262228_at AT1G68690 AtPERK9, proline-rich extensin-like receptor kinase 9, PERK9, proline-rich extensin-like receptor kinase 9 0.380 -0.133
41 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] 0.378 0.366
42 254512_at AT4G20230 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.374 0.196
43 265546_at AT2G28240 [ATP-dependent helicase family protein] 0.371 -0.009
44 252343_at AT3G48610 NPC6, non-specific phospholipase C6 0.368 0.258
45 257054_at AT3G15353 ATMT3, MT3, metallothionein 3 0.365 0.129
46 263028_at AT1G24030 [Protein kinase superfamily protein] 0.363 -0.034
47 263629_at AT2G04850 [Auxin-responsive family protein] 0.361 0.165
48 249915_at AT5G22870 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.361 0.003
49 246275_at AT4G36540 BEE2, BR enhanced expression 2 0.359 0.052
50 249010_at AT5G44580 unknown 0.359 -0.270
51 251162_at AT3G63300 FKD1, FORKED 1 0.357 0.230
52 252533_at AT3G46110 [LOCATED IN: plasma membrane] 0.356 0.120
53 256818_at AT3G21420 LBO1, LATERAL BRANCHING OXIDOREDUCTASE 1 0.351 0.183
54 251243_at AT3G61870 unknown 0.341 -0.090
55 248977_at AT5G45020 [Glutathione S-transferase family protein] 0.341 -0.179
56 247425_at AT5G62550 unknown 0.341 0.500
57 259021_at AT3G07540 [Actin-binding FH2 (formin homology 2) family protein] 0.337 0.039
58 260167_at AT1G71970 unknown 0.336 -0.252
59 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 0.332 0.086
60 263305_at AT2G01930 ATBPC1, BASIC PENTACYSTEINE1, BBR, BPC1, basic pentacysteine1 -0.995 -0.227
61 262719_at AT1G43590 unknown -0.567 -0.033
62 253626_at AT4G30640 [RNI-like superfamily protein] -0.433 -0.443
63 259351_at AT3G05150 [Major facilitator superfamily protein] -0.389 -0.500
64 261099_at AT1G62980 ATEXP18, ATEXPA18, expansin A18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, EXPA18, expansin A18 -0.388 -0.348
65 252502_at AT3G46900 COPT2, copper transporter 2 -0.379 -0.095
66 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.341 -0.197
67 260871_at AT1G29040 unknown -0.328 -0.333
68 267588_at AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] -0.325 -0.831
69 250576_at AT5G08250 [Cytochrome P450 superfamily protein] -0.317 -0.107
70 249868_at AT5G23030 TET12, tetraspanin12 -0.310 -0.809
71 263948_at AT2G35980 ATNHL10, ARABIDOPSIS NDR1/HIN1-LIKE 10, NHL10, NDR1/HIN1-LIKE, YLS9, YELLOW-LEAF-SPECIFIC GENE 9 -0.306 -0.524
72 265501_at AT2G15490 UGT73B4, UDP-glycosyltransferase 73B4 -0.305 0.071
73 251481_at AT3G59730 LecRK-V.6, L-type lectin receptor kinase V.6 -0.301 -0.409
74 255243_at AT4G05590 unknown -0.297 -0.580
75 259462_at AT1G18940 [Nodulin-like / Major Facilitator Superfamily protein] -0.295 -0.126
76 262525_at AT1G17060 CHI2, CHIBI 2, CYP72C1, cytochrome p450 72c1, SHK1, SHRINK 1, SOB7, SUPPRESSOR OF PHYB-4 7 -0.294 -0.208
77 250771_at AT5G05400 [LRR and NB-ARC domains-containing disease resistance protein] -0.281 -0.283
78 254041_at AT4G25830 [Uncharacterised protein family (UPF0497)] -0.279 -0.527
79 256141_at AT1G48640 [Transmembrane amino acid transporter family protein] -0.277 -0.258
80 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.274 0.300
81 265539_at AT2G15830 unknown -0.268 -0.877
82 258745_at AT3G05920 [Heavy metal transport/detoxification superfamily protein ] -0.260 -0.546
83 247678_at AT5G59520 AtZIP2, ZIP2, ZRT/IRT-like protein 2 -0.249 -0.267
84 259276_at AT3G01190 [Peroxidase superfamily protein] -0.247 -0.189
85 251255_at AT3G62280 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.245 -0.154
86 260432_at AT1G68150 ATWRKY9, WRKY9, WRKY DNA-binding protein 9 -0.243 -0.330
87 251983_at AT3G53210 UMAMIT6, Usually multiple acids move in and out Transporters 6 -0.240 -0.338
88 259443_at AT1G02360 [Chitinase family protein] -0.238 -0.327
89 267582_at AT2G41970 [Protein kinase superfamily protein] -0.233 -0.229
90 256250_at AT3G11320 [Nucleotide-sugar transporter family protein] -0.232 -0.157
91 249073_at AT5G44020 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.231 -0.354
92 258729_at AT3G11900 ANT1, aromatic and neutral transporter 1 -0.231 0.021
93 252879_at AT4G39390 ATNST-KT1, A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, NST-K1, nucleotide sugar transporter-KT 1 -0.228 -0.038
94 250972_at AT5G02840 LCL1, LHY/CCA1-like 1 -0.228 -0.715
95 265646_at AT2G27360 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.228 -0.500
96 262457_at AT1G11200 unknown -0.224 0.015
97 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.222 -0.417
98 264716_at AT1G70170 MMP, matrix metalloproteinase -0.221 -0.278
99 266670_at AT2G29740 UGT71C2, UDP-glucosyl transferase 71C2 -0.216 -0.437
100 267418_at AT2G35000 ATL9, Arabidopsis toxicos en levadura 9 -0.215 -0.404
101 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 -0.213 -0.769
102 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.209 -0.205
103 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 -0.209 -0.362
104 256022_at AT1G58360 AAP1, amino acid permease 1, AtAAP1, NAT2, NEUTRAL AMINO ACID TRANSPORTER 2 -0.208 -0.183
105 266500_at AT2G06925 ATSPLA2-ALPHA, PHOSPHOLIPASE A2-ALPHA, PLA2-ALPHA -0.208 -0.212
106 251107_at AT5G01610 unknown -0.205 -0.521
107 264907_at AT2G17280 [Phosphoglycerate mutase family protein] -0.204 -0.238
108 252596_at AT3G45330 LecRK-I.1, L-type lectin receptor kinase I.1 -0.203 -0.773
109 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 -0.202 -0.473
110 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.202 0.483
111 251713_at AT3G56080 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.198 -0.049
112 253006_at AT4G38250 [Transmembrane amino acid transporter family protein] -0.198 -0.254
113 262215_at AT1G74790 [catalytics] -0.198 -0.132
114 260567_at AT2G43820 ATSAGT1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, GT, SAGT1, salicylic acid glucosyltransferase 1, SGT1, UDP-glucose:salicylic acid glucosyltransferase 1, UGT74F2, UDP-glucosyltransferase 74F2 -0.191 -0.082
115 246098_at AT5G20400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.191 -0.125
116 266613_at AT2G14900 [Gibberellin-regulated family protein] -0.188 -0.187
117 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 -0.188 -0.537