4.0:Information of module
root hypoxia pSHR
In comparison with 2hr continuous KNO3 and MSX and Gln PeR cell help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044036 cell wall macromolecule metabolic proces... BP 2.546e-08
GO:0010383 cell wall polysaccharide metabolic proce... BP 2.920e-06
GO:0010413 glucuronoxylan metabolic process BP 2.932e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0071705 nitrogen compound transport BP 2.762e-16
GO:0044699 single-organism process BP 3.316e-16
GO:0006810 transport BP 1.091e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root hypoxia pSHR		 Log2 signal ratio
2hr continuous KNO3 and MSX and Gln PeR cell
1 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 1.158 -0.069
2 248186_at AT5G53880 unknown 0.784 0.316
3 256131_at AT1G13600 AtbZIP58, basic leucine-zipper 58, bZIP58, basic leucine-zipper 58 0.700 0.191
4 254217_at AT4G23720 unknown 0.616 -0.034
5 265468_at AT2G37210 LOG3, LONELY GUY 3 0.580 0.109
6 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] 0.573 -0.079
7 262283_at AT1G68590 PSRP3/1, plastid-specific ribosomal protein 3/1 0.571 0.329
8 264437_at AT1G27510 EX2, EXECUTER 2 0.568 -0.081
9 258782_at AT3G11750 FOLB1 0.550 0.038
10 253040_at AT4G37800 XTH7, xyloglucan endotransglucosylase/hydrolase 7 0.548 0.130
11 248230_at AT5G53830 [VQ motif-containing protein] 0.538 0.121
12 245845_at AT1G26150 AtPERK10, proline-rich extensin-like receptor kinase 10, PERK10, proline-rich extensin-like receptor kinase 10 0.520 -0.360
13 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.509 0.143
14 255028_at AT4G09890 unknown 0.507 -0.014
15 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.484 -0.034
16 265025_at AT1G24575 unknown 0.481 0.112
17 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 0.479 -0.033
18 249860_at AT5G22860 [Serine carboxypeptidase S28 family protein] 0.476 0.016
19 257398_at AT2G01990 unknown 0.474 0.104
20 251916_at AT3G53960 [Major facilitator superfamily protein] 0.457 0.035
21 249465_at AT5G39720 AIG2L, avirulence induced gene 2 like protein 0.453 0.206
22 266309_at AT2G27140 [HSP20-like chaperones superfamily protein] 0.444 0.185
23 249992_at AT5G18560 PUCHI 0.437 0.077
24 255651_at AT4G00940 AtDOF4.1, DOF4.1, DNA binding with one finger 4.1, ITD1, INTERCELLULAR TRAFFICKING DOF 1 0.434 -0.066
25 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.432 0.309
26 247773_at AT5G58630 TRM31, TON1 Recruiting Motif 31 0.431 0.027
27 254632_at AT4G18630 unknown 0.424 -0.215
28 251646_at AT3G57780 unknown 0.423 0.119
29 254240_at AT4G23496 SP1L5, SPIRAL1-like5 0.422 -0.032
30 262120_at AT1G02950 ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31, GSTF4, glutathione S-transferase F4 0.419 0.136
31 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] 0.418 0.264
32 251940_at AT3G53450 LOG4, LONELY GUY 4 0.401 -0.204
33 252128_at AT3G50870 GATA18, GATA TRANSCRIPTION FACTOR 18, HAN, HANABA TANARU, MNP, MONOPOLE 0.398 0.184
34 250927_at AT5G03270 LOG6, LONELY GUY 6 0.397 0.053
35 256447_at AT1G33440 AtNPF4.4, NPF4.4, NRT1/ PTR family 4.4 0.389 0.054
36 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.384 0.523
37 261840_at AT1G16070 AtTLP8, tubby like protein 8, TLP8, tubby like protein 8 0.384 0.200
38 263709_at AT1G09310 unknown 0.383 0.152
39 247747_at AT5G59000 [RING/FYVE/PHD zinc finger superfamily protein] 0.380 0.003
40 262228_at AT1G68690 AtPERK9, proline-rich extensin-like receptor kinase 9, PERK9, proline-rich extensin-like receptor kinase 9 0.380 -0.515
41 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] 0.378 0.217
42 254512_at AT4G20230 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.374 0.176
43 265546_at AT2G28240 [ATP-dependent helicase family protein] 0.371 -0.053
44 252343_at AT3G48610 NPC6, non-specific phospholipase C6 0.368 0.011
45 257054_at AT3G15353 ATMT3, MT3, metallothionein 3 0.365 0.180
46 263028_at AT1G24030 [Protein kinase superfamily protein] 0.363 0.092
47 263629_at AT2G04850 [Auxin-responsive family protein] 0.361 0.035
48 249915_at AT5G22870 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.361 -0.033
49 246275_at AT4G36540 BEE2, BR enhanced expression 2 0.359 0.203
50 249010_at AT5G44580 unknown 0.359 -0.147
51 251162_at AT3G63300 FKD1, FORKED 1 0.357 -0.013
52 252533_at AT3G46110 [LOCATED IN: plasma membrane] 0.356 0.035
53 256818_at AT3G21420 LBO1, LATERAL BRANCHING OXIDOREDUCTASE 1 0.351 -0.316
54 251243_at AT3G61870 unknown 0.341 0.146
55 248977_at AT5G45020 [Glutathione S-transferase family protein] 0.341 0.121
56 247425_at AT5G62550 unknown 0.341 0.010
57 259021_at AT3G07540 [Actin-binding FH2 (formin homology 2) family protein] 0.337 -0.093
58 260167_at AT1G71970 unknown 0.336 -0.224
59 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 0.332 0.040
60 263305_at AT2G01930 ATBPC1, BASIC PENTACYSTEINE1, BBR, BPC1, basic pentacysteine1 -0.995 -0.004
61 262719_at AT1G43590 unknown -0.567 -0.123
62 253626_at AT4G30640 [RNI-like superfamily protein] -0.433 -0.089
63 259351_at AT3G05150 [Major facilitator superfamily protein] -0.389 -0.264
64 261099_at AT1G62980 ATEXP18, ATEXPA18, expansin A18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, EXPA18, expansin A18 -0.388 0.142
65 252502_at AT3G46900 COPT2, copper transporter 2 -0.379 0.060
66 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.341 -0.419
67 260871_at AT1G29040 unknown -0.328 0.022
68 267588_at AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] -0.325 0.058
69 250576_at AT5G08250 [Cytochrome P450 superfamily protein] -0.317 -0.209
70 249868_at AT5G23030 TET12, tetraspanin12 -0.310 0.002
71 263948_at AT2G35980 ATNHL10, ARABIDOPSIS NDR1/HIN1-LIKE 10, NHL10, NDR1/HIN1-LIKE, YLS9, YELLOW-LEAF-SPECIFIC GENE 9 -0.306 0.139
72 265501_at AT2G15490 UGT73B4, UDP-glycosyltransferase 73B4 -0.305 -0.229
73 251481_at AT3G59730 LecRK-V.6, L-type lectin receptor kinase V.6 -0.301 -0.258
74 255243_at AT4G05590 unknown -0.297 -0.215
75 259462_at AT1G18940 [Nodulin-like / Major Facilitator Superfamily protein] -0.295 -0.001
76 262525_at AT1G17060 CHI2, CHIBI 2, CYP72C1, cytochrome p450 72c1, SHK1, SHRINK 1, SOB7, SUPPRESSOR OF PHYB-4 7 -0.294 -0.337
77 250771_at AT5G05400 [LRR and NB-ARC domains-containing disease resistance protein] -0.281 -0.020
78 254041_at AT4G25830 [Uncharacterised protein family (UPF0497)] -0.279 0.325
79 256141_at AT1G48640 [Transmembrane amino acid transporter family protein] -0.277 -0.063
80 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.274 0.002
81 265539_at AT2G15830 unknown -0.268 0.270
82 258745_at AT3G05920 [Heavy metal transport/detoxification superfamily protein ] -0.260 -0.371
83 247678_at AT5G59520 AtZIP2, ZIP2, ZRT/IRT-like protein 2 -0.249 -0.013
84 259276_at AT3G01190 [Peroxidase superfamily protein] -0.247 -0.361
85 251255_at AT3G62280 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.245 -0.268
86 260432_at AT1G68150 ATWRKY9, WRKY9, WRKY DNA-binding protein 9 -0.243 -0.269
87 251983_at AT3G53210 UMAMIT6, Usually multiple acids move in and out Transporters 6 -0.240 -0.074
88 259443_at AT1G02360 [Chitinase family protein] -0.238 -0.015
89 267582_at AT2G41970 [Protein kinase superfamily protein] -0.233 -0.195
90 256250_at AT3G11320 [Nucleotide-sugar transporter family protein] -0.232 -0.235
91 249073_at AT5G44020 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.231 -0.264
92 258729_at AT3G11900 ANT1, aromatic and neutral transporter 1 -0.231 -0.073
93 252879_at AT4G39390 ATNST-KT1, A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, NST-K1, nucleotide sugar transporter-KT 1 -0.228 0.042
94 250972_at AT5G02840 LCL1, LHY/CCA1-like 1 -0.228 0.040
95 265646_at AT2G27360 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.228 -0.016
96 262457_at AT1G11200 unknown -0.224 -0.009
97 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.222 -0.299
98 264716_at AT1G70170 MMP, matrix metalloproteinase -0.221 -0.079
99 266670_at AT2G29740 UGT71C2, UDP-glucosyl transferase 71C2 -0.216 -0.211
100 267418_at AT2G35000 ATL9, Arabidopsis toxicos en levadura 9 -0.215 -0.038
101 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 -0.213 -0.370
102 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.209 -0.051
103 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 -0.209 0.136
104 256022_at AT1G58360 AAP1, amino acid permease 1, AtAAP1, NAT2, NEUTRAL AMINO ACID TRANSPORTER 2 -0.208 -0.287
105 266500_at AT2G06925 ATSPLA2-ALPHA, PHOSPHOLIPASE A2-ALPHA, PLA2-ALPHA -0.208 -0.176
106 251107_at AT5G01610 unknown -0.205 -0.231
107 264907_at AT2G17280 [Phosphoglycerate mutase family protein] -0.204 -0.199
108 252596_at AT3G45330 LecRK-I.1, L-type lectin receptor kinase I.1 -0.203 -0.126
109 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 -0.202 0.173
110 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.202 -0.007
111 251713_at AT3G56080 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.198 -0.179
112 253006_at AT4G38250 [Transmembrane amino acid transporter family protein] -0.198 -0.102
113 262215_at AT1G74790 [catalytics] -0.198 -0.198
114 260567_at AT2G43820 ATSAGT1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, GT, SAGT1, salicylic acid glucosyltransferase 1, SGT1, UDP-glucose:salicylic acid glucosyltransferase 1, UGT74F2, UDP-glucosyltransferase 74F2 -0.191 -0.263
115 246098_at AT5G20400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.191 -0.242
116 266613_at AT2G14900 [Gibberellin-regulated family protein] -0.188 -0.000
117 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 -0.188 0.157