4.0:Information of module
root hypoxia pSCR
In comparison with root cap pGL2(QC pSCRBRI1) 0h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009698 phenylpropanoid metabolic process BP 5.800e-07
GO:0044550 secondary metabolite biosynthetic proces... BP 3.325e-06
GO:0006633 fatty acid biosynthetic process BP 5.352e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006811 ion transport BP 1.288e-11
GO:0010167 response to nitrate BP 2.045e-11
GO:0015706 nitrate transport BP 6.297e-11
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root hypoxia pSCR		 Log2 signal ratio
root cap pGL2(QC pSCRBRI1) 0h BL
1 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 1.197 2.994
2 260535_at AT2G43390 unknown 0.770 2.829
3 257704_at AT3G12720 ATMYB67, myb domain protein 67, ATY53, MYB67, MYB67, myb domain protein 67 0.693 3.924
4 262339_at AT1G64000 ATWRKY56, WRKY56, WRKY DNA-binding protein 56 0.674 2.712
5 260091_at AT1G73290 scpl5, serine carboxypeptidase-like 5 0.632 3.345
6 252195_at AT3G50190 unknown 0.625 2.241
7 255903_at AT1G17950 ATMYB52, MYB DOMAIN PROTEIN 52, BW52, MYB52, myb domain protein 52 0.612 2.664
8 245845_at AT1G26150 AtPERK10, proline-rich extensin-like receptor kinase 10, PERK10, proline-rich extensin-like receptor kinase 10 0.599 -1.196
9 252988_at AT4G38410 [Dehydrin family protein] 0.592 2.336
10 254404_at AT4G21340 B70 0.592 3.022
11 248990_at AT5G45210 [Disease resistance protein (TIR-NBS-LRR class) family] 0.589 2.845
12 256131_at AT1G13600 AtbZIP58, basic leucine-zipper 58, bZIP58, basic leucine-zipper 58 0.550 2.456
13 267391_at AT2G44480 BGLU17, beta glucosidase 17 0.545 3.507
14 264437_at AT1G27510 EX2, EXECUTER 2 0.543 0.483
15 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.540 0.337
16 263387_at AT2G40160 TBL30 0.512 2.538
17 261385_at AT1G05450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.500 3.306
18 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] 0.494 3.087
19 248424_at AT5G51680 [hydroxyproline-rich glycoprotein family protein] 0.484 1.283
20 245345_at AT4G16640 [Matrixin family protein] 0.480 2.485
21 247231_at AT5G65230 AtMYB53, myb domain protein 53, MYB53, myb domain protein 53 0.478 3.568
22 252196_at AT3G50200 unknown 0.471 2.391
23 247769_at AT5G58910 LAC16, laccase 16 0.469 3.812
24 263005_at AT1G54540 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.462 3.121
25 263467_at AT2G31730 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.461 2.463
26 256710_at AT3G30350 GLV3, GOLVEN 3, RGF4, root meristem growth factor 4 0.459 1.069
27 256176_at AT1G51640 ATEXO70G2, exocyst subunit exo70 family protein G2, EXO70G2, exocyst subunit exo70 family protein G2 0.451 2.749
28 263825_at AT2G40370 LAC5, laccase 5 0.449 3.180
29 250572_at AT5G08210 MIR834A, microRNA834A 0.447 0.146
30 258625_at AT3G04370 PDLP4, plasmodesmata-located protein 4 0.443 2.726
31 263327_at AT2G15300 [Leucine-rich repeat protein kinase family protein] 0.442 2.609
32 262640_at AT1G62760 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.438 2.777
33 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 0.433 0.634
34 260684_at AT1G17590 NF-YA8, nuclear factor Y, subunit A8 0.432 1.455
35 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 0.431 2.302
36 250474_at AT5G10230 ANN7, ANNEXIN 7, ANNAT7, annexin 7 0.430 3.281
37 254415_at AT4G21326 ATSBT3.12, subtilase 3.12, SBT3.12, subtilase 3.12 0.427 -1.721
38 267048_at AT2G34200 [RING/FYVE/PHD zinc finger superfamily protein] 0.427 1.198
39 266126_at AT2G45040 [Matrixin family protein] 0.426 2.895
40 246181_at AT5G20860 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.422 2.499
41 259624_at AT1G43020 unknown 0.421 2.962
42 248205_at AT5G54300 unknown 0.420 2.213
43 260035_at AT1G68850 [Peroxidase superfamily protein] 0.401 2.911
44 264010_at AT2G21100 [Disease resistance-responsive (dirigent-like protein) family protein] 0.400 2.717
45 248761_at AT5G47635 [Pollen Ole e 1 allergen and extensin family protein] 0.397 2.215
46 253397_at AT4G32710 PERK14, proline-rich extensin-like receptor kinase 14 0.393 2.100
47 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.386 3.545
48 245702_at AT5G04220 ATSYTC, NTMC2T1.3, NTMC2TYPE1.3, SYT3, synaptotagmin 3, SYTC 0.384 1.917
49 259282_at AT3G11430 ATGPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5, GPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5 0.373 2.958
50 252233_at AT3G49690 ATMYB84, MYB DOMAIN PROTEIN 84, MYB84, myb domain protein 84, RAX3, REGULATOR OF AXILLARY MERISTEMS3 0.371 2.954
51 254914_at AT4G11290 [Peroxidase superfamily protein] 0.370 2.267
52 246826_at AT5G26310 UGT72E3 0.369 2.722
53 248696_at AT5G48360 [Actin-binding FH2 (formin homology 2) family protein] 0.369 1.584
54 267344_at AT2G44230 unknown 0.368 3.080
55 252569_at AT3G45420 LecRK-I.4, L-type lectin receptor kinase I.4 0.367 -1.742
56 250157_at AT5G15180 [Peroxidase superfamily protein] -0.545 -4.518
57 252430_at AT3G47470 CAB4, LHCA4, light-harvesting chlorophyll-protein complex I subunit A4 -0.408 -0.058
58 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.404 -3.657
59 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 -0.370 -3.639
60 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] -0.349 -7.720
61 267191_at AT2G44110 ATMLO15, MILDEW RESISTANCE LOCUS O 15, MLO15, MILDEW RESISTANCE LOCUS O 15 -0.349 -4.307
62 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 -0.341 -3.362
63 266669_at AT2G29750 UGT71C1, UDP-glucosyl transferase 71C1 -0.338 -3.212
64 264826_at AT1G03410 2A6 -0.337 -3.159
65 255016_at AT4G10120 ATSPS4F -0.334 -5.725
66 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.332 -1.328
67 254041_at AT4G25830 [Uncharacterised protein family (UPF0497)] -0.310 -1.621
68 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] -0.307 -5.411
69 265463_at AT2G37090 IRX9, IRREGULAR XYLEM 9 -0.306 -4.874
70 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] -0.303 -3.266
71 259268_at AT3G01070 AtENODL16, ENODL16, early nodulin-like protein 16 -0.296 -3.161
72 265852_at AT2G42350 [RING/U-box superfamily protein] -0.289 -2.215
73 258183_at AT3G21550 AtDMP2, Arabidopsis thaliana DUF679 domain membrane protein 2, DMP2, DUF679 domain membrane protein 2 -0.284 -4.625
74 247483_at AT5G62420 [NAD(P)-linked oxidoreductase superfamily protein] -0.276 -3.736
75 264574_at AT1G05300 ZIP5, zinc transporter 5 precursor -0.276 -2.818
76 259774_at AT1G29520 [AWPM-19-like family protein] -0.271 -4.553
77 266670_at AT2G29740 UGT71C2, UDP-glucosyl transferase 71C2 -0.266 -1.181
78 249868_at AT5G23030 TET12, tetraspanin12 -0.265 -2.408
79 248885_at AT5G46150 [LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein] -0.262 0.435
80 262388_at AT1G49320 unknown -0.258 -3.369
81 253626_at AT4G30640 [RNI-like superfamily protein] -0.257 -1.666
82 267582_at AT2G41970 [Protein kinase superfamily protein] -0.255 -2.381
83 247970_at AT5G56720 c-NAD-MDH3, cytosolic-NAD-dependent malate dehydrogenase 3 -0.249 -3.803
84 265279_at AT2G28460 [Cysteine/Histidine-rich C1 domain family protein] -0.247 -3.303
85 252502_at AT3G46900 COPT2, copper transporter 2 -0.247 -4.631
86 246868_at AT5G26010 [Protein phosphatase 2C family protein] -0.245 -2.719
87 267128_at AT2G23620 ATMES1, ARABIDOPSIS THALIANA METHYL ESTERASE 1, MES1, methyl esterase 1 -0.245 -2.970
88 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -0.237 -4.711
89 247882_at AT5G57785 unknown -0.233 -0.435
90 262525_at AT1G17060 CHI2, CHIBI 2, CYP72C1, cytochrome p450 72c1, SHK1, SHRINK 1, SOB7, SUPPRESSOR OF PHYB-4 7 -0.233 -2.242
91 251255_at AT3G62280 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.232 -4.263
92 248263_at AT5G53370 ATPMEPCRF, PECTIN METHYLESTERASE PCR FRAGMENT F, PMEPCRF, pectin methylesterase PCR fragment F -0.224 -2.809
93 260553_at AT2G41800 unknown -0.224 -5.595
94 247902_at AT5G57350 AHA3, H(+)-ATPase 3, ATAHA3, ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE, HA3, H(+)-ATPase 3 -0.223 -4.041
95 253816_at AT4G28210 EMB1923, embryo defective 1923 -0.222 -0.575
96 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor -0.221 -2.925
97 265333_at AT2G18350 AtHB24, homeobox protein 24, HB24, homeobox protein 24, ZHD6, ZINC FINGER HOMEODOMAIN 6 -0.221 -2.788
98 250438_at AT5G10580 unknown -0.219 -4.345
99 259462_at AT1G18940 [Nodulin-like / Major Facilitator Superfamily protein] -0.216 -0.633
100 246993_at AT5G67450 AZF1, zinc-finger protein 1, ZF1, zinc-finger protein 1 -0.216 -3.505
101 247487_at AT5G62150 [peptidoglycan-binding LysM domain-containing protein] -0.215 -3.167
102 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 -0.214 -2.776
103 251918_at AT3G54040 [PAR1 protein] -0.212 -3.138
104 258760_at AT3G10780 [emp24/gp25L/p24 family/GOLD family protein] -0.206 -4.161
105 261937_at AT1G22570 [Major facilitator superfamily protein] -0.205 -1.623
106 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 -0.204 -3.419
107 254774_at AT4G13440 [Calcium-binding EF-hand family protein] -0.204 -3.838
108 252879_at AT4G39390 ATNST-KT1, A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, NST-K1, nucleotide sugar transporter-KT 1 -0.204 -1.485
109 264907_at AT2G17280 [Phosphoglycerate mutase family protein] -0.201 -5.221
110 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor -0.199 -1.737