4.0:Information of module
root hypoxia pSCR
In comparison with Col BTH help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009698 phenylpropanoid metabolic process BP 5.800e-07
GO:0044550 secondary metabolite biosynthetic proces... BP 3.325e-06
GO:0006633 fatty acid biosynthetic process BP 5.352e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006811 ion transport BP 1.288e-11
GO:0010167 response to nitrate BP 2.045e-11
GO:0015706 nitrate transport BP 6.297e-11
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root hypoxia pSCR		 Log2 signal ratio
Col BTH
1 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 1.197 -0.005
2 260535_at AT2G43390 unknown 0.770 -0.003
3 257704_at AT3G12720 ATMYB67, myb domain protein 67, ATY53, MYB67, MYB67, myb domain protein 67 0.693 0.015
4 262339_at AT1G64000 ATWRKY56, WRKY56, WRKY DNA-binding protein 56 0.674 -0.035
5 260091_at AT1G73290 scpl5, serine carboxypeptidase-like 5 0.632 -0.034
6 252195_at AT3G50190 unknown 0.625 -0.082
7 255903_at AT1G17950 ATMYB52, MYB DOMAIN PROTEIN 52, BW52, MYB52, myb domain protein 52 0.612 -0.017
8 245845_at AT1G26150 AtPERK10, proline-rich extensin-like receptor kinase 10, PERK10, proline-rich extensin-like receptor kinase 10 0.599 0.000
9 252988_at AT4G38410 [Dehydrin family protein] 0.592 -0.031
10 254404_at AT4G21340 B70 0.592 -0.071
11 248990_at AT5G45210 [Disease resistance protein (TIR-NBS-LRR class) family] 0.589 -0.017
12 256131_at AT1G13600 AtbZIP58, basic leucine-zipper 58, bZIP58, basic leucine-zipper 58 0.550 0.003
13 267391_at AT2G44480 BGLU17, beta glucosidase 17 0.545 0.105
14 264437_at AT1G27510 EX2, EXECUTER 2 0.543 0.009
15 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.540 -0.072
16 263387_at AT2G40160 TBL30 0.512 0.006
17 261385_at AT1G05450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.500 0.002
18 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] 0.494 0.199
19 248424_at AT5G51680 [hydroxyproline-rich glycoprotein family protein] 0.484 -0.026
20 245345_at AT4G16640 [Matrixin family protein] 0.480 -0.034
21 247231_at AT5G65230 AtMYB53, myb domain protein 53, MYB53, myb domain protein 53 0.478 0.010
22 252196_at AT3G50200 unknown 0.471 -0.013
23 247769_at AT5G58910 LAC16, laccase 16 0.469 -0.009
24 263005_at AT1G54540 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.462 0.071
25 263467_at AT2G31730 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.461 0.013
26 256710_at AT3G30350 GLV3, GOLVEN 3, RGF4, root meristem growth factor 4 0.459 0.046
27 256176_at AT1G51640 ATEXO70G2, exocyst subunit exo70 family protein G2, EXO70G2, exocyst subunit exo70 family protein G2 0.451 0.052
28 263825_at AT2G40370 LAC5, laccase 5 0.449 -0.017
29 250572_at AT5G08210 MIR834A, microRNA834A 0.447 0.111
30 258625_at AT3G04370 PDLP4, plasmodesmata-located protein 4 0.443 0.001
31 263327_at AT2G15300 [Leucine-rich repeat protein kinase family protein] 0.442 0.028
32 262640_at AT1G62760 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.438 -0.046
33 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 0.433 -0.036
34 260684_at AT1G17590 NF-YA8, nuclear factor Y, subunit A8 0.432 0.090
35 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 0.431 0.028
36 250474_at AT5G10230 ANN7, ANNEXIN 7, ANNAT7, annexin 7 0.430 -0.057
37 254415_at AT4G21326 ATSBT3.12, subtilase 3.12, SBT3.12, subtilase 3.12 0.427 0.076
38 267048_at AT2G34200 [RING/FYVE/PHD zinc finger superfamily protein] 0.427 -0.019
39 266126_at AT2G45040 [Matrixin family protein] 0.426 -0.104
40 246181_at AT5G20860 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.422 0.044
41 259624_at AT1G43020 unknown 0.421 -0.006
42 248205_at AT5G54300 unknown 0.420 -0.135
43 260035_at AT1G68850 [Peroxidase superfamily protein] 0.401 0.005
44 264010_at AT2G21100 [Disease resistance-responsive (dirigent-like protein) family protein] 0.400 0.053
45 248761_at AT5G47635 [Pollen Ole e 1 allergen and extensin family protein] 0.397 -0.088
46 253397_at AT4G32710 PERK14, proline-rich extensin-like receptor kinase 14 0.393 -0.126
47 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.386 -0.021
48 245702_at AT5G04220 ATSYTC, NTMC2T1.3, NTMC2TYPE1.3, SYT3, synaptotagmin 3, SYTC 0.384 0.115
49 259282_at AT3G11430 ATGPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5, GPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5 0.373 0.038
50 252233_at AT3G49690 ATMYB84, MYB DOMAIN PROTEIN 84, MYB84, myb domain protein 84, RAX3, REGULATOR OF AXILLARY MERISTEMS3 0.371 -0.062
51 254914_at AT4G11290 [Peroxidase superfamily protein] 0.370 -0.016
52 246826_at AT5G26310 UGT72E3 0.369 -0.050
53 248696_at AT5G48360 [Actin-binding FH2 (formin homology 2) family protein] 0.369 -0.056
54 267344_at AT2G44230 unknown 0.368 -0.099
55 252569_at AT3G45420 LecRK-I.4, L-type lectin receptor kinase I.4 0.367 0.026
56 250157_at AT5G15180 [Peroxidase superfamily protein] -0.545 -0.012
57 252430_at AT3G47470 CAB4, LHCA4, light-harvesting chlorophyll-protein complex I subunit A4 -0.408 -0.012
58 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.404 -0.094
59 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 -0.370 0.327
60 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] -0.349 0.008
61 267191_at AT2G44110 ATMLO15, MILDEW RESISTANCE LOCUS O 15, MLO15, MILDEW RESISTANCE LOCUS O 15 -0.349 0.020
62 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 -0.341 0.244
63 266669_at AT2G29750 UGT71C1, UDP-glucosyl transferase 71C1 -0.338 0.042
64 264826_at AT1G03410 2A6 -0.337 -0.021
65 255016_at AT4G10120 ATSPS4F -0.334 0.084
66 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.332 -0.091
67 254041_at AT4G25830 [Uncharacterised protein family (UPF0497)] -0.310 -0.100
68 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] -0.307 0.012
69 265463_at AT2G37090 IRX9, IRREGULAR XYLEM 9 -0.306 -0.100
70 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] -0.303 -0.002
71 259268_at AT3G01070 AtENODL16, ENODL16, early nodulin-like protein 16 -0.296 -0.073
72 265852_at AT2G42350 [RING/U-box superfamily protein] -0.289 0.286
73 258183_at AT3G21550 AtDMP2, Arabidopsis thaliana DUF679 domain membrane protein 2, DMP2, DUF679 domain membrane protein 2 -0.284 -0.037
74 247483_at AT5G62420 [NAD(P)-linked oxidoreductase superfamily protein] -0.276 -0.071
75 264574_at AT1G05300 ZIP5, zinc transporter 5 precursor -0.276 0.141
76 259774_at AT1G29520 [AWPM-19-like family protein] -0.271 -0.149
77 266670_at AT2G29740 UGT71C2, UDP-glucosyl transferase 71C2 -0.266 0.001
78 249868_at AT5G23030 TET12, tetraspanin12 -0.265 -0.014
79 248885_at AT5G46150 [LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein] -0.262 0.035
80 262388_at AT1G49320 unknown -0.258 -0.103
81 253626_at AT4G30640 [RNI-like superfamily protein] -0.257 0.392
82 267582_at AT2G41970 [Protein kinase superfamily protein] -0.255 -0.035
83 247970_at AT5G56720 c-NAD-MDH3, cytosolic-NAD-dependent malate dehydrogenase 3 -0.249 -0.116
84 265279_at AT2G28460 [Cysteine/Histidine-rich C1 domain family protein] -0.247 0.018
85 252502_at AT3G46900 COPT2, copper transporter 2 -0.247 0.183
86 246868_at AT5G26010 [Protein phosphatase 2C family protein] -0.245 -0.032
87 267128_at AT2G23620 ATMES1, ARABIDOPSIS THALIANA METHYL ESTERASE 1, MES1, methyl esterase 1 -0.245 0.014
88 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -0.237 -0.147
89 247882_at AT5G57785 unknown -0.233 -0.064
90 262525_at AT1G17060 CHI2, CHIBI 2, CYP72C1, cytochrome p450 72c1, SHK1, SHRINK 1, SOB7, SUPPRESSOR OF PHYB-4 7 -0.233 0.200
91 251255_at AT3G62280 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.232 0.033
92 248263_at AT5G53370 ATPMEPCRF, PECTIN METHYLESTERASE PCR FRAGMENT F, PMEPCRF, pectin methylesterase PCR fragment F -0.224 0.130
93 260553_at AT2G41800 unknown -0.224 -0.016
94 247902_at AT5G57350 AHA3, H(+)-ATPase 3, ATAHA3, ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE, HA3, H(+)-ATPase 3 -0.223 -0.022
95 253816_at AT4G28210 EMB1923, embryo defective 1923 -0.222 -0.096
96 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor -0.221 -0.016
97 265333_at AT2G18350 AtHB24, homeobox protein 24, HB24, homeobox protein 24, ZHD6, ZINC FINGER HOMEODOMAIN 6 -0.221 0.024
98 250438_at AT5G10580 unknown -0.219 -0.034
99 259462_at AT1G18940 [Nodulin-like / Major Facilitator Superfamily protein] -0.216 0.063
100 246993_at AT5G67450 AZF1, zinc-finger protein 1, ZF1, zinc-finger protein 1 -0.216 0.137
101 247487_at AT5G62150 [peptidoglycan-binding LysM domain-containing protein] -0.215 0.128
102 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 -0.214 -0.040
103 251918_at AT3G54040 [PAR1 protein] -0.212 -0.088
104 258760_at AT3G10780 [emp24/gp25L/p24 family/GOLD family protein] -0.206 -0.046
105 261937_at AT1G22570 [Major facilitator superfamily protein] -0.205 0.072
106 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 -0.204 -0.178
107 254774_at AT4G13440 [Calcium-binding EF-hand family protein] -0.204 -0.084
108 252879_at AT4G39390 ATNST-KT1, A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, NST-K1, nucleotide sugar transporter-KT 1 -0.204 0.155
109 264907_at AT2G17280 [Phosphoglycerate mutase family protein] -0.201 -0.103
110 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor -0.199 -0.089