4.0:Information of module
root hypoxia pGL2
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009799 specification of symmetry BP 9.009e-05
GO:0009855 determination of bilateral symmetry BP 9.009e-05
GO:0007389 pattern specification process BP 4.902e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006694 steroid biosynthetic process BP 3.492e-12
GO:0008202 steroid metabolic process BP 1.548e-10
GO:0016126 sterol biosynthetic process BP 1.999e-09
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root hypoxia pGL2		 Log2 signal ratio
bri1-116
1 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 1.067 0.033
2 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] 1.016 0.124
3 265025_at AT1G24575 unknown 0.855 0.178
4 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] 0.767 0.181
5 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein 0.763 0.162
6 265769_at AT2G48090 unknown 0.735 0.095
7 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.730 0.046
8 255016_at AT4G10120 ATSPS4F 0.660 -0.109
9 263652_at AT1G04330 unknown 0.655 0.005
10 248230_at AT5G53830 [VQ motif-containing protein] 0.649 -0.117
11 255621_at AT4G01390 [TRAF-like family protein] 0.618 0.084
12 245845_at AT1G26150 AtPERK10, proline-rich extensin-like receptor kinase 10, PERK10, proline-rich extensin-like receptor kinase 10 0.614 0.307
13 255626_at AT4G00780 [TRAF-like family protein] 0.603 0.144
14 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.597 0.320
15 250650_at AT5G06850 FTIP1, FT-interacting protein 1 0.592 0.102
16 250031_at AT5G18240 ATMYR1, ARABIDOPSIS MYB-RELATED PROTEIN 1, MYR1, myb-related protein 1 0.575 0.117
17 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.575 0.079
18 261133_at AT1G19715 [Mannose-binding lectin superfamily protein] 0.572 0.159
19 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 0.569 0.045
20 267497_at AT2G30540 [Thioredoxin superfamily protein] 0.553 0.452
21 252078_at AT3G51740 IMK2, inflorescence meristem receptor-like kinase 2 0.539 -0.032
22 245990_at AT5G20640 unknown 0.533 0.000
23 262921_at AT1G79430 APL, ALTERED PHLOEM DEVELOPMENT, WDY, WOODY 0.531 0.140
24 265546_at AT2G28240 [ATP-dependent helicase family protein] 0.528 0.060
25 255448_at AT4G02810 FAF1, FANTASTIC FOUR 1 0.528 0.093
26 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.528 -0.079
27 259632_at AT1G56430 ATNAS4, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, NAS4, nicotianamine synthase 4 0.526 0.302
28 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.524 0.093
29 260831_at AT1G06830 [Glutaredoxin family protein] 0.521 0.311
30 256537_at AT1G33340 [ENTH/ANTH/VHS superfamily protein] 0.520 -0.054
31 260773_at AT1G78440 ATGA2OX1, Arabidopsis thaliana gibberellin 2-oxidase 1, GA2OX1, gibberellin 2-oxidase 1 0.516 0.044
32 249482_at AT5G38980 unknown 0.515 0.203
33 253040_at AT4G37800 XTH7, xyloglucan endotransglucosylase/hydrolase 7 0.510 -0.188
34 261574_at AT1G01190 CYP78A8, cytochrome P450, family 78, subfamily A, polypeptide 8 0.510 -0.059
35 258807_at AT3G04030 MYR2 0.507 0.062
36 265939_at AT2G19650 [Cysteine/Histidine-rich C1 domain family protein] 0.502 0.130
37 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 0.496 0.086
38 259765_at AT1G64370 unknown 0.490 -0.165
39 264437_at AT1G27510 EX2, EXECUTER 2 0.486 0.049
40 266325_at AT2G46630 unknown 0.479 -0.033
41 263632_at AT2G04795 unknown 0.468 0.144
42 258170_at AT3G21600 [Senescence/dehydration-associated protein-related] 0.462 0.174
43 248137_at AT5G54950 [Aconitase family protein] 0.457 0.037
44 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.457 0.085
45 247282_at AT5G64240 AtMC3, metacaspase 3, AtMCP1a, metacaspase 1a, MC3, metacaspase 3, MCP1a, metacaspase 1a 0.450 0.169
46 262778_at AT1G13050 unknown 0.450 0.022
47 258456_at AT3G22420 ATWNK2, ARABIDOPSIS THALIANA WITH NO K 2, WNK2, with no lysine (K) kinase 2, ZIK3 0.449 0.224
48 257502_at AT1G78110 unknown 0.446 0.049
49 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.444 0.041
50 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.442 -0.054
51 250223_at AT5G14070 ROXY2 0.437 -0.319
52 257054_at AT3G15353 ATMT3, MT3, metallothionein 3 0.436 0.164
53 250869_at AT5G03840 TFL-1, TERMINAL FLOWER 1, TFL1, TERMINAL FLOWER 1 0.435 0.050
54 253571_at AT4G31000 [Calmodulin-binding protein] 0.433 0.062
55 262228_at AT1G68690 AtPERK9, proline-rich extensin-like receptor kinase 9, PERK9, proline-rich extensin-like receptor kinase 9 0.429 -0.116
56 253002_at AT4G38530 ATPLC1, phospholipase C1, PLC1, phospholipase C1 0.427 0.200
57 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.422 -0.143
58 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.419 0.301
59 265719_at AT2G03500 [Homeodomain-like superfamily protein] 0.410 0.037
60 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.406 0.072
61 254374_at AT4G21780 unknown 0.394 0.099
62 253397_at AT4G32710 PERK14, proline-rich extensin-like receptor kinase 14 0.394 -0.046
63 247959_at AT5G57080 unknown 0.392 0.129
64 256754_at AT3G25690 AtCHUP1, Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, CHUP1, CHLOROPLAST UNUSUAL POSITIONING 1 0.392 0.174
65 246440_at AT5G17650 [glycine/proline-rich protein] 0.389 -0.009
66 260307_at AT1G70620 [cyclin-related] 0.388 0.045
67 264204_at AT1G22710 ATSUC2, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, SUC2, sucrose-proton symporter 2, SUT1, SUCROSE TRANSPORTER 1 0.385 0.126
68 254551_at AT4G19840 ATPP2-A1, phloem protein 2-A1, ATPP2A-1, phloem protein 2-A1, PP2-A1, phloem protein 2-A1 0.383 0.195
69 247340_at AT5G63700 [zinc ion binding] 0.375 0.109
70 255893_at AT1G17960 [Threonyl-tRNA synthetase] 0.373 -0.240
71 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.370 0.172
72 254305_at AT4G22200 AKT2, AKT2/3, potassium transport 2/3, AKT3, KT2/3, potassium transport 2/3 0.367 0.058
73 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] 0.365 0.027
74 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.364 -0.171
75 247357_at AT5G63710 [Leucine-rich repeat protein kinase family protein] 0.362 0.034
76 262728_at AT1G75820 ATCLV1, CLV1, CLAVATA 1, FAS3, FASCIATA 3, FLO5, FLOWER DEVELOPMENT 5 0.360 0.225
77 256400_at AT3G06140 LUL4, LOG2-LIKE UBIQUITIN LIGASE4 0.358 0.130
78 259423_at AT1G13880 [ELM2 domain-containing protein] 0.358 0.073
79 251646_at AT3G57780 unknown 0.358 0.030
80 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.357 0.075
81 252929_at AT4G38970 AtFBA2, FBA2, fructose-bisphosphate aldolase 2 0.350 0.209
82 248186_at AT5G53880 unknown 0.346 0.041
83 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 0.343 0.078
84 250157_at AT5G15180 [Peroxidase superfamily protein] -0.709 -0.121
85 264403_at AT2G25150 [HXXXD-type acyl-transferase family protein] -0.662 -0.822
86 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] -0.640 0.003
87 247657_at AT5G59845 [Gibberellin-regulated family protein] -0.583 -0.112
88 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.582 0.058
89 261691_at AT1G50060 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.547 0.078
90 249934_at AT5G22410 RHS18, root hair specific 18 -0.519 0.028
91 262719_at AT1G43590 unknown -0.512 -0.168
92 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 -0.488 0.173
93 249773_at AT5G24140 SQP2, squalene monooxygenase 2 -0.485 -0.072
94 245889_at AT5G09480 [hydroxyproline-rich glycoprotein family protein] -0.447 -0.123
95 260941_at AT1G44970 [Peroxidase superfamily protein] -0.435 -0.373
96 252302_at AT3G49190 [O-acyltransferase (WSD1-like) family protein] -0.424 0.125
97 265048_at AT1G52050 [Mannose-binding lectin superfamily protein] -0.420 0.047
98 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.420 0.010
99 245412_at AT4G17280 [Auxin-responsive family protein] -0.393 -0.407
100 253957_at AT4G26320 AGP13, arabinogalactan protein 13 -0.384 -0.594
101 258183_at AT3G21550 AtDMP2, Arabidopsis thaliana DUF679 domain membrane protein 2, DMP2, DUF679 domain membrane protein 2 -0.382 -0.097
102 254313_at AT4G22460 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.380 -0.715
103 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 -0.375 -0.063
104 266244_at AT2G27740 unknown -0.373 -0.215
105 245001_at ATCG00220 PSBM, photosystem II reaction center protein M -0.370 0.033
106 264577_at AT1G05260 RCI3, RARE COLD INDUCIBLE GENE 3, RCI3A -0.370 -0.404
107 247091_at AT5G66390 PRX72, PEROXIDASE 72 -0.367 -0.281
108 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] -0.355 0.032
109 267038_at AT2G38480 [Uncharacterised protein family (UPF0497)] -0.355 -0.236
110 263555_at AT2G16460 unknown -0.354 -0.038
111 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 -0.346 -0.618
112 265539_at AT2G15830 unknown -0.346 0.146
113 248382_at AT5G51890 [Peroxidase superfamily protein] -0.345 -0.067
114 267582_at AT2G41970 [Protein kinase superfamily protein] -0.344 -0.009
115 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.326 -0.455
116 266708_at AT2G03200 [Eukaryotic aspartyl protease family protein] -0.318 -0.304
117 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 -0.317 -0.110
118 249868_at AT5G23030 TET12, tetraspanin12 -0.316 0.021
119 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] -0.314 -0.151
120 263005_at AT1G54540 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.313 -0.062
121 260983_at AT1G53560 [Ribosomal protein L18ae family] -0.310 -0.015
122 258745_at AT3G05920 [Heavy metal transport/detoxification superfamily protein ] -0.309 -0.208
123 255528_at AT4G02090 unknown -0.306 -0.119
124 250958_at AT5G03260 LAC11, laccase 11 -0.303 -0.244
125 249439_at AT5G40020 [Pathogenesis-related thaumatin superfamily protein] -0.302 -0.178
126 263687_at AT1G26940 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] -0.299 -0.234
127 260386_at AT1G74010 [Calcium-dependent phosphotriesterase superfamily protein] -0.299 0.039
128 245792_at AT1G32100 ATPRR1, PRR1, pinoresinol reductase 1 -0.299 -0.243
129 260867_at AT1G43790 TED6, tracheary element differentiation-related 6 -0.295 0.006
130 245665_at AT1G28250 unknown -0.293 -0.049
131 249061_at AT5G44550 [Uncharacterised protein family (UPF0497)] -0.288 -0.091
132 249622_at AT5G37550 unknown -0.288 -0.129
133 246966_at AT5G24850 CRY3, cryptochrome 3 -0.276 0.257
134 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] -0.273 -0.628
135 265463_at AT2G37090 IRX9, IRREGULAR XYLEM 9 -0.271 -0.232
136 254213_at AT4G23590 [Tyrosine transaminase family protein] -0.269 0.070
137 264842_at AT1G03700 [Uncharacterised protein family (UPF0497)] -0.266 0.123
138 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 -0.260 0.065
139 254226_at AT4G23690 AtDIR6, Arabidopsis thaliana dirigent protein 6, DIR6, dirigent protein 6 -0.259 -0.231
140 246826_at AT5G26310 UGT72E3 -0.258 -0.322
141 256933_at AT3G22600 LTPG5, glycosylphosphatidylinositol-anchored lipid protein transfer 5 -0.258 -0.223
142 260035_at AT1G68850 [Peroxidase superfamily protein] -0.256 -0.184
143 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.252 -0.226
144 262796_at AT1G20850 XCP2, xylem cysteine peptidase 2 -0.251 -0.077
145 245612_at AT4G14440 ATECI3, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, ECI3, DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, HCD1, 3-hydroxyacyl-CoA dehydratase 1 -0.246 -0.023
146 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 -0.246 -0.112
147 265334_at AT2G18370 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.245 -0.110
148 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -0.240 -0.190
149 251087_at AT5G01460 [LMBR1-like membrane protein] -0.238 -0.031
150 255901_at AT1G17890 GER2 -0.237 -0.020
151 254907_at AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] -0.234 -0.507
152 263681_at AT1G26840 ATORC6, ARABIDOPSIS THALIANA ORIGIN RECOGNITION COMPLEX PROTEIN 6, ORC6, origin recognition complex protein 6 -0.233 -0.046
153 263948_at AT2G35980 ATNHL10, ARABIDOPSIS NDR1/HIN1-LIKE 10, NHL10, NDR1/HIN1-LIKE, YLS9, YELLOW-LEAF-SPECIFIC GENE 9 -0.233 -0.239
154 256900_at AT3G24670 [Pectin lyase-like superfamily protein] -0.232 -0.009
155 250102_at AT5G16590 LRR1, Leucine rich repeat protein 1 -0.232 -0.270
156 266613_at AT2G14900 [Gibberellin-regulated family protein] -0.229 0.032
157 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.229 -0.096
158 245553_at AT4G15370 BARS1, baruol synthase 1, PEN2, PENTACYCLIC TRITERPENE SYNTHASE 2 -0.229 0.050
159 250224_at AT5G14150 unknown -0.228 0.082
160 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.228 0.058
161 256141_at AT1G48640 [Transmembrane amino acid transporter family protein] -0.227 0.021
162 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 -0.227 -0.102
163 259737_at AT1G64400 LACS3, long-chain acyl-CoA synthetase 3 -0.226 0.013
164 248068_at AT5G55610 unknown -0.225 -0.064
165 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 -0.225 0.167