4.0:Information of module
root hypoxia pCO2
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044036 cell wall macromolecule metabolic proces... BP 1.928e-04
GO:0009943 adaxial/abaxial axis specification BP 7.165e-04
GO:0009944 polarity specification of adaxial/abaxia... BP 7.165e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006810 transport BP 4.557e-10
GO:0051234 establishment of localization BP 1.226e-09
GO:0051179 localization BP 2.215e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root hypoxia pCO2		 Log2 signal ratio
Leafminer damaged seedlings
1 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 1.261 0.015
2 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] 0.875 0.043
3 252078_at AT3G51740 IMK2, inflorescence meristem receptor-like kinase 2 0.799 -0.084
4 264145_at AT1G79310 AtMC7, metacaspase 7, AtMCP2a, metacaspase 2a, MC7, metacaspase 7, MCP2a, metacaspase 2a 0.785 0.463
5 252432_at AT3G47680 [DNA binding] 0.769 -0.023
6 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.767 -0.096
7 245845_at AT1G26150 AtPERK10, proline-rich extensin-like receptor kinase 10, PERK10, proline-rich extensin-like receptor kinase 10 0.755 -0.216
8 261873_at AT1G11350 CBRLK1, CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, RKS2, SD1-13, S-domain-1 13 0.729 -0.157
9 264437_at AT1G27510 EX2, EXECUTER 2 0.715 -0.170
10 250425_at AT5G10530 LecRK-IX.1, L-type lectin receptor kinase IX.1 0.711 -0.090
11 245758_at AT1G32240 KAN2, KANADI 2 0.709 -0.269
12 262778_at AT1G13050 unknown 0.689 -0.079
13 261215_at AT1G32970 [Subtilisin-like serine endopeptidase family protein] 0.680 0.037
14 264912_at AT1G60750 [NAD(P)-linked oxidoreductase superfamily protein] 0.676 -0.039
15 246620_at AT5G36220 CYP81D1, cytochrome P450, family 81, subfamily D, polypeptide 1, CYP91A1, CYTOCHROME P450 91A1 0.650 0.329
16 262228_at AT1G68690 AtPERK9, proline-rich extensin-like receptor kinase 9, PERK9, proline-rich extensin-like receptor kinase 9 0.646 0.346
17 264454_at AT1G10320 [Zinc finger C-x8-C-x5-C-x3-H type family protein] 0.638 -0.016
18 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 0.633 0.971
19 249860_at AT5G22860 [Serine carboxypeptidase S28 family protein] 0.632 0.143
20 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 0.629 -0.420
21 263194_at AT1G36060 [Integrase-type DNA-binding superfamily protein] 0.610 -0.045
22 265546_at AT2G28240 [ATP-dependent helicase family protein] 0.608 0.017
23 252195_at AT3G50190 unknown 0.592 0.008
24 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.562 0.001
25 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 0.549 0.042
26 265195_at AT2G36730 [Pentatricopeptide repeat (PPR) superfamily protein] 0.533 -0.005
27 257185_at AT3G13100 ABCC7, ATP-binding cassette C7, ATMRP7, multidrug resistance-associated protein 7, MRP7, MRP7, multidrug resistance-associated protein 7 0.530 0.060
28 250132_at AT5G16560 KAN, KANADI, KAN1, KANADI 1 0.526 0.182
29 252534_at AT3G46130 ATMYB48, myb domain protein 48, ATMYB48-1, ATMYB48-2, ATMYB48-3, MYB48, myb domain protein 48 0.525 -0.416
30 255646_at AT4G00890 [proline-rich family protein] 0.524 -0.007
31 253571_at AT4G31000 [Calmodulin-binding protein] 0.509 -0.159
32 247959_at AT5G57080 unknown 0.507 0.014
33 249006_at AT5G44660 unknown 0.506 -0.374
34 250572_at AT5G08210 MIR834A, microRNA834A 0.505 -0.072
35 264587_at AT1G05200 ATGLR3.4, glutamate receptor 3.4, GLR3.4, glutamate receptor 3.4, GLUR3 0.493 -0.180
36 254894_at AT4G11840 PLDGAMMA3, phospholipase D gamma 3 0.476 -0.062
37 245079_at AT2G23330 [copia-like retrotransposon family, has a 3.9e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] 0.471 0.124
38 253397_at AT4G32710 PERK14, proline-rich extensin-like receptor kinase 14 0.469 -0.364
39 266325_at AT2G46630 unknown 0.466 -0.361
40 247549_at AT5G61420 AtMYB28, HAG1, HIGH ALIPHATIC GLUCOSINOLATE 1, MYB28, myb domain protein 28, PMG1, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1 0.462 -0.411
41 254415_at AT4G21326 ATSBT3.12, subtilase 3.12, SBT3.12, subtilase 3.12 0.460 0.089
42 249029_at AT5G44870 LAZ5, LAZARUS 5, TTR1, tolerance to Tobacco ringspot virus 1 0.458 -0.000
43 260684_at AT1G17590 NF-YA8, nuclear factor Y, subunit A8 0.456 0.037
44 250103_at AT5G16600 AtMYB43, myb domain protein 43, MYB43, myb domain protein 43 0.455 -0.216
45 258581_at AT3G04160 unknown 0.455 -0.056
46 261041_at AT1G17440 CKH1, CYTOKININ-HYPERSENSITIVE 1, EER4, ENHANCED ETHYLENE RESPONSE 4, TAF12B, TBP-ASSOCIATED FACTOR 12B 0.452 0.039
47 265038_at AT1G03920 [Protein kinase family protein] 0.451 -0.047
48 256710_at AT3G30350 GLV3, GOLVEN 3, RGF4, root meristem growth factor 4 0.449 -0.030
49 262829_at AT1G14970 [O-fucosyltransferase family protein] 0.447 -0.201
50 249162_at AT5G42765 unknown 0.446 -0.085
51 261615_at AT1G33050 unknown 0.444 0.078
52 255893_at AT1G17960 [Threonyl-tRNA synthetase] 0.444 0.053
53 264489_at AT1G27370 SPL10, squamosa promoter binding protein-like 10 0.443 -0.177
54 260307_at AT1G70620 [cyclin-related] 0.443 -0.056
55 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] 0.442 0.114
56 251347_at AT3G61010 [Ferritin/ribonucleotide reductase-like family protein] 0.441 -0.017
57 245702_at AT5G04220 ATSYTC, NTMC2T1.3, NTMC2TYPE1.3, SYT3, synaptotagmin 3, SYTC 0.439 0.272
58 253913_at AT4G27370 ATVIIIB, MYOSIN VIII B, VIIIB 0.431 -0.143
59 260341_at AT1G69170 AtSPL6, SPL6, SQUAMOSA PROMOTER BINDING PROTEIN (SBP)-domain transcription factor 6 0.429 -0.146
60 255703_at AT4G00040 [Chalcone and stilbene synthase family protein] 0.423 -0.058
61 260666_at AT1G19300 ATGATL1, GATL1, GALACTURONOSYLTRANSFERASE-LIKE 1, GLZ1, GAOLAOZHUANGREN 1, PARVUS, PARVUS 0.420 0.449
62 251695_at AT3G56590 [hydroxyproline-rich glycoprotein family protein] 0.414 -0.173
63 251711_at AT3G56960 PIP5K4, phosphatidyl inositol monophosphate 5 kinase 4 0.412 -0.066
64 246261_at AT1G31810 AFH14, Formin Homology 14 0.412 -0.150
65 267627_at AT2G42270 [U5 small nuclear ribonucleoprotein helicase] 0.410 -0.099
66 248137_at AT5G54950 [Aconitase family protein] 0.409 0.032
67 248696_at AT5G48360 [Actin-binding FH2 (formin homology 2) family protein] 0.408 -0.420
68 258833_at AT3G07274 0.405 0.198
69 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] 0.399 -0.383
70 249877_at AT5G23150 HUA2, ENHANCER OF AG-4 2 0.399 0.025
71 267015_at AT2G39340 AtSAC3A, SAC3A, yeast Sac3 homolog A 0.396 -0.034
72 262561_at AT1G34340 [alpha/beta-Hydrolases superfamily protein] 0.393 0.144
73 258014_at AT3G19330 unknown 0.392 0.019
74 253400_at AT4G32860 unknown 0.392 0.077
75 256945_at AT3G19020 [Leucine-rich repeat (LRR) family protein] 0.390 0.046
76 257610_at AT3G13810 AtIDD11, indeterminate(ID)-domain 11, IDD11, indeterminate(ID)-domain 11 0.386 -0.123
77 252905_at AT4G39720 [VQ motif-containing protein] 0.382 0.067
78 246550_at AT5G14920 GASA14, A-stimulated in Arabidopsis 14 0.380 -0.190
79 256493_at AT1G31600 AtTRM9, Arabidopsis thaliana tRNA methyltransferase 9, TRM9, tRNA methyltransferase 9 0.379 0.026
80 251766_at AT3G55910 unknown 0.379 0.304
81 258906_at AT3G06380 ATTLP9, tubby-like protein 9, TLP9, tubby-like protein 9 0.376 -0.040
82 264257_at AT1G09230 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.376 0.037
83 255873_at AT2G30340 LBD13, LOB domain-containing protein 13 0.372 -0.029
84 246653_at AT5G35200 [ENTH/ANTH/VHS superfamily protein] 0.368 0.038
85 266099_at AT2G38040 CAC3, acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 0.368 -0.136
86 258063_at AT3G14620 CYP72A8, cytochrome P450, family 72, subfamily A, polypeptide 8 0.367 0.001
87 258663_at AT3G08670 unknown 0.365 -0.021
88 264169_at AT1G02020 [nitroreductase family protein] 0.363 -0.069
89 256908_at AT3G24040 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.360 -0.111
90 260979_at AT1G53510 ATMPK18, ARABIDOPSIS THALIANA MAP KINASE 18, MPK18, mitogen-activated protein kinase 18 0.360 -0.021
91 263260_at AT1G10570 OTS2, OVERLY TOLERANT TO SALT 2, ULP1C, UB-LIKE PROTEASE 1C 0.358 -0.012
92 260599_at AT1G55940 CYP708A1, cytochrome P450, family 708, subfamily A, polypeptide 1 0.357 -0.037
93 255148_at AT4G08470 MAPKKK10, MEKK3, MAPK/ERK kinase kinase 3 0.356 0.227
94 264672_at AT1G09750 [Eukaryotic aspartyl protease family protein] 0.356 -0.327
95 264905_at AT2G17430 ATMLO7, MLO7, MILDEW RESISTANCE LOCUS O 7, NTA, NORTIA 0.355 -0.042
96 266910_at AT2G45920 [U-box domain-containing protein] 0.355 -0.119
97 248106_at AT5G55100 [SWAP (Suppressor-of-White-APricot)/surp domain-containing protein] 0.353 -0.057
98 261099_at AT1G62980 ATEXP18, ATEXPA18, expansin A18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, EXPA18, expansin A18 -0.374 -0.006
99 260389_at AT1G74055 unknown -0.328 -0.080
100 262496_at AT1G21790 [TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein] -0.299 0.180
101 246581_at AT1G31760 [SWIB/MDM2 domain superfamily protein] -0.297 -0.078
102 253957_at AT4G26320 AGP13, arabinogalactan protein 13 -0.294 0.011
103 262457_at AT1G11200 unknown -0.276 0.226
104 253626_at AT4G30640 [RNI-like superfamily protein] -0.268 0.052
105 245386_at AT4G14010 RALFL32, ralf-like 32 -0.265 -0.018
106 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 -0.264 0.856
107 249061_at AT5G44550 [Uncharacterised protein family (UPF0497)] -0.263 -0.079
108 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.263 0.271
109 255016_at AT4G10120 ATSPS4F -0.261 -0.557
110 248763_at AT5G47550 [Cystatin/monellin superfamily protein] -0.258 -0.132
111 258183_at AT3G21550 AtDMP2, Arabidopsis thaliana DUF679 domain membrane protein 2, DMP2, DUF679 domain membrane protein 2 -0.256 -0.102
112 246842_at AT5G26731 unknown -0.255 0.204
113 261256_at AT1G05760 RTM1, restricted tev movement 1 -0.248 -0.107
114 260330_at AT1G80400 [RING/U-box superfamily protein] -0.247 -0.026
115 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.247 -0.073
116 265391_at AT2G20810 GAUT10, galacturonosyltransferase 10, LGT4 -0.244 0.019
117 255053_at AT4G09730 RH39, RH39 -0.244 -0.202
118 257715_at AT3G12750 AtZIP1, ZIP1, zinc transporter 1 precursor -0.242 -0.266
119 244961_at ATCG01040 YCF5 -0.241 -0.045
120 251087_at AT5G01460 [LMBR1-like membrane protein] -0.241 -0.091
121 265663_at AT2G24290 unknown -0.238 -0.109
122 264907_at AT2G17280 [Phosphoglycerate mutase family protein] -0.238 -0.066
123 251383_at AT3G60740 CHO, CHAMPIGNON, EMB133, EMBRYO DEFECTIVE 133, TFC D, TUBULIN FOLDING COFACTOR D, TTN1, TITAN 1 -0.238 -0.110
124 247882_at AT5G57785 unknown -0.238 -0.084
125 254010_at AT4G26240 unknown -0.235 0.125
126 254037_at AT4G25760 ATGDU2, glutamine dumper 2, GDU2, glutamine dumper 2 -0.235 -0.090
127 266441_at AT2G43250 unknown -0.234 -0.042
128 256387_at AT3G06170 [Serinc-domain containing serine and sphingolipid biosynthesis protein] -0.231 0.043
129 265628_at AT2G27290 unknown -0.229 -0.025
130 251255_at AT3G62280 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.227 0.033
131 253810_at AT4G28220 NDB1, NAD(P)H dehydrogenase B1 -0.223 -0.143
132 266561_at AT2G23960 [Class I glutamine amidotransferase-like superfamily protein] -0.221 -0.115
133 257861_at AT3G13050 AtNiaP, NiaP, nicotinate transporter -0.220 0.263
134 245818_at AT1G26100 [Cytochrome b561/ferric reductase transmembrane protein family] -0.220 -0.177
135 264842_at AT1G03700 [Uncharacterised protein family (UPF0497)] -0.219 0.047
136 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor -0.219 -0.075
137 250025_at AT5G18290 SIP1;2, SIP1B, SMALL AND BASIC INTRINSIC PROTEIN 1B -0.219 -0.113
138 247902_at AT5G57350 AHA3, H(+)-ATPase 3, ATAHA3, ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE, HA3, H(+)-ATPase 3 -0.218 -0.015
139 251194_at AT3G62920 unknown -0.217 0.067
140 249139_at AT5G43170 AZF3, zinc-finger protein 3, ZF3, zinc-finger protein 3 -0.216 0.291
141 259774_at AT1G29520 [AWPM-19-like family protein] -0.215 -0.049
142 245644_at AT1G25320 [Leucine-rich repeat protein kinase family protein] -0.213 0.095
143 262413_at AT1G34780 APRL4, APR-like 4, ATAPRL4, APR-like 4 -0.213 0.105
144 245940_at AT5G19630 [alpha/beta-Hydrolases superfamily protein] -0.209 -0.035
145 249070_at AT5G44030 CESA4, cellulose synthase A4, IRX5, IRREGULAR XYLEM 5, NWS2 -0.208 -0.185
146 267494_at AT2G30410 KIS, KIESEL, TFCA, TUBULIN FOLDING FACTOR A -0.208 0.021
147 263351_at AT2G22120 [RING/FYVE/PHD zinc finger superfamily protein] -0.208 0.018
148 249868_at AT5G23030 TET12, tetraspanin12 -0.207 0.006
149 253776_at AT4G28390 AAC3, ADP/ATP carrier 3, ATAAC3 -0.206 0.162
150 265279_at AT2G28460 [Cysteine/Histidine-rich C1 domain family protein] -0.206 -0.188
151 256900_at AT3G24670 [Pectin lyase-like superfamily protein] -0.205 -0.073
152 263612_at AT2G16440 MCM4, MINICHROMOSOME MAINTENANCE 4 -0.205 -0.284
153 259938_at AT1G71310 ODB1, Organellar DNA-Binding protein 1, RAD52-1, radiation sensitive 51-1, RAD52-1A, RAD52-1B.1, RAD52-1B.2 -0.205 0.069
154 253931_at AT4G26770 [Phosphatidate cytidylyltransferase family protein] -0.204 0.051
155 254125_at AT4G24670 TAR2, tryptophan aminotransferase related 2 -0.204 -0.311
156 264336_at AT1G70360 [F-box family protein] -0.204 0.098
157 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 -0.204 -0.597
158 256928_at AT3G22590 CDC73, PHP, PLANT HOMOLOGOUS TO PARAFIBROMIN -0.203 -0.043
159 256964_at AT3G13520 AGP12, arabinogalactan protein 12, ATAGP12 -0.203 -0.195
160 260983_at AT1G53560 [Ribosomal protein L18ae family] -0.202 0.273
161 266774_at AT2G29050 ATRBL1, RHOMBOID-like 1, RBL1, RHOMBOID-like 1 -0.201 -0.050
162 265416_at AT2G37120 [S1FA-like DNA-binding protein] -0.201 0.083
163 259002_at AT3G02000 ROXY1 -0.200 -0.007
164 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.200 -0.295
165 251858_at AT3G54820 PIP2;5, plasma membrane intrinsic protein 2;5, PIP2D, PLASMA MEMBRANE INTRINSIC PROTEIN 2D -0.199 0.103
166 245388_at AT4G16410 unknown -0.199 -0.122
167 260354_at AT1G69330 [RING/U-box superfamily protein] -0.199 0.106
168 250438_at AT5G10580 unknown -0.198 0.015
169 256611_at AT3G29270 [RING/U-box superfamily protein] -0.198 0.000
170 262200_at AT2G01070 [Lung seven transmembrane receptor family protein] -0.197 -0.241
171 264022_at AT2G21185 unknown -0.197 -0.005
172 256383_at AT1G66820 [glycine-rich protein] -0.197 -0.247
173 245739_at AT1G44110 CYCA1;1, Cyclin A1;1 -0.196 0.014
174 264930_at AT1G60800 AtNIK3, NIK3, NSP-interacting kinase 3 -0.194 -0.499
175 245338_at AT4G16442 [Uncharacterised protein family (UPF0497)] -0.194 0.077
176 253569_at AT4G31250 [Leucine-rich repeat protein kinase family protein] -0.194 -0.134
177 260724_at AT1G48140 DPMS3, dolichol phosphate mannose synthase 3 -0.193 0.114
178 258844_at AT3G04740 ATMED14, ARABIDOPSIS MEDIATOR COMPONENTS 14, MED14, MEDIATOR COMPONENTS 14, SWP, STRUWWELPETER -0.192 -0.056
179 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 -0.191 -0.031
180 248640_at AT5G48910 LPA66, LOW PSII ACCUMULATION 66 -0.190 -0.310
181 252896_at AT4G39480 CYP96A9, cytochrome P450, family 96, subfamily A, polypeptide 9 -0.188 0.002
182 254351_at AT4G22300 SOBER1, SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1 -0.187 -0.010
183 249874_at AT5G23070 AtTK1b, TK1b, thymidine kinase 1b -0.186 -0.095
184 251066_at AT5G01880 DAFL2, DAF-Like gene 2 -0.186 -0.168
185 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] -0.184 0.562
186 260946_at AT1G06010 unknown -0.184 0.043
187 249523_at AT5G38630 ACYB-1, cytochrome B561-1, CYB-1, cytochrome B561-1 -0.183 0.100
188 260386_at AT1G74010 [Calcium-dependent phosphotriesterase superfamily protein] -0.182 0.824
189 248149_at AT5G54855 [Pollen Ole e 1 allergen and extensin family protein] -0.182 0.036
190 245564_at AT4G14590 emb2739, embryo defective 2739 -0.181 0.013
191 255951_at AT1G22050 MUB6, membrane-anchored ubiquitin-fold protein 6 precursor -0.180 -0.047
192 267143_at AT2G38100 [proton-dependent oligopeptide transport (POT) family protein] -0.180 0.014
193 245101_at AT2G40890 CYP98A3, cytochrome P450, family 98, subfamily A, polypeptide 3 -0.179 0.004