4.0:Information of module
root hypoxia p35S
In comparison with root cap pGL2(QC pSCRBRI1) 0h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009799 specification of symmetry BP 1.917e-06
GO:0010073 meristem maintenance BP 2.599e-06
GO:0009944 polarity specification of adaxial/abaxia... BP 4.865e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.166e-16
GO:0015979 photosynthesis BP 8.661e-12
GO:0000041 transition metal ion transport BP 2.091e-10
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root hypoxia p35S		 Log2 signal ratio
root cap pGL2(QC pSCRBRI1) 0h BL
1 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 0.764 -3.452
2 256535_at AT1G33280 ANAC015, NAC domain containing protein 15, BRN1, BEARSKIN 1, NAC015, NAC domain containing protein 15 0.581 -7.546
3 267137_at AT2G23410 ACPT, cis-prenyltransferase, AtcPT3, CPT, cis-prenyltransferase, cPT3, cis-prenyltransferase 3 0.561 -6.892
4 261691_at AT1G50060 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.493 -7.210
5 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 0.475 -5.501
6 262283_at AT1G68590 PSRP3/1, plastid-specific ribosomal protein 3/1 0.473 -1.432
7 264947_at AT1G77020 [DNAJ heat shock N-terminal domain-containing protein] 0.471 -3.381
8 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] 0.454 -2.204
9 261954_at AT1G64510 [Translation elongation factor EF1B/ribosomal protein S6 family protein] 0.450 -0.239
10 254632_at AT4G18630 unknown 0.439 -2.541
11 258935_at AT3G10120 unknown 0.437 -3.324
12 251113_at AT5G01370 ACI1, ALC-interacting protein 1, TRM29, TON1 Recruiting Motif 29 0.434 -3.284
13 262312_at AT1G70830 MLP28, MLP-like protein 28 0.421 0.888
14 247397_at AT5G62940 DOF5.6, DNA BINDING WITH ONE FINGER 5.6, HCA2, HIGH CAMBIAL ACTIVITY2 0.405 -5.421
15 255028_at AT4G09890 unknown 0.400 0.177
16 262286_at AT1G68585 unknown 0.389 -4.027
17 252210_at AT3G50410 OBP1, OBF binding protein 1 0.388 -2.331
18 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D 0.386 -3.871
19 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] 0.385 -5.743
20 247747_at AT5G59000 [RING/FYVE/PHD zinc finger superfamily protein] 0.381 -3.532
21 251491_at AT3G59480 [pfkB-like carbohydrate kinase family protein] 0.377 -0.710
22 252248_at AT3G49750 AtRLP44, receptor like protein 44, RLP44, receptor like protein 44 0.372 -2.140
23 266325_at AT2G46630 unknown 0.371 -4.380
24 252661_at AT3G44450 unknown 0.370 -1.093
25 262443_at AT1G47655 [Dof-type zinc finger DNA-binding family protein] 0.362 -3.207
26 261653_at AT1G01900 ATSBT1.1, SBTI1.1 0.361 -5.176
27 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.357 -5.680
28 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 0.345 -2.949
29 255652_at AT4G00950 MEE47, maternal effect embryo arrest 47 0.345 -2.514
30 257502_at AT1G78110 unknown 0.344 -3.554
31 248186_at AT5G53880 unknown 0.343 -2.316
32 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.339 0.849
33 265995_at AT2G24140 unknown 0.338 -3.655
34 249046_at AT5G44400 [FAD-binding Berberine family protein] 0.338 -2.272
35 255602_at AT4G01026 PYL7, PYR1-like 7, RCAR2, regulatory components of ABA receptor 2 0.336 -3.143
36 258222_at AT3G15680 [Ran BP2/NZF zinc finger-like superfamily protein] 0.334 -4.857
37 247625_at AT5G60200 TMO6, TARGET OF MONOPTEROS 6 0.332 -5.045
38 252944_at AT4G39320 [microtubule-associated protein-related] 0.329 1.155
39 250694_at AT5G06710 HAT14, homeobox from Arabidopsis thaliana 0.328 0.800
40 256400_at AT3G06140 LUL4, LOG2-LIKE UBIQUITIN LIGASE4 0.323 -1.154
41 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] 0.321 -7.720
42 265494_at AT2G15680 AtCML30, CML30, calmodulin-like 30 0.321 0.146
43 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.319 2.327
44 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.317 -5.659
45 265468_at AT2G37210 LOG3, LONELY GUY 3 0.317 -1.518
46 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 0.317 -4.536
47 252173_at AT3G50650 [GRAS family transcription factor] 0.316 -2.946
48 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.313 0.337
49 258008_at AT3G19430 [late embryogenesis abundant protein-related / LEA protein-related] 0.312 -6.845
50 262120_at AT1G02950 ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31, GSTF4, glutathione S-transferase F4 0.310 -4.655
51 262759_at AT1G10800 unknown 0.309 -3.989
52 253010_at AT4G37750 ANT, AINTEGUMENTA, CKC, CKC1, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, DRG, DRAGON 0.308 -3.688
53 255016_at AT4G10120 ATSPS4F 0.308 -5.725
54 267012_at AT2G39220 PLA IIB, PLP6, PATATIN-like protein 6 0.308 -3.030
55 253871_at AT4G27440 PORB, protochlorophyllide oxidoreductase B 0.307 -1.520
56 253419_at AT4G32780 [phosphoinositide binding] 0.307 -5.051
57 267526_at AT2G30570 PSBW, photosystem II reaction center W 0.305 -1.098
58 259373_at AT1G69160 unknown 0.304 -2.988
59 267197_at AT2G30960 unknown 0.304 -2.115
60 249809_at AT5G23910 [ATP binding microtubule motor family protein] 0.303 -0.906
61 263913_at AT2G36570 PXC1, PXY/TDR-correlated 1 0.301 -4.941
62 255628_at AT4G00850 GIF3, GRF1-interacting factor 3 0.301 0.338
63 245353_at AT4G16000 unknown 0.299 -3.874
64 248674_at AT5G48800 [Phototropic-responsive NPH3 family protein] 0.296 -3.975
65 255022_at AT4G10350 ANAC070, NAC domain containing protein 70, BRN2, BEARSKIN 2, NAC070, NAC domain containing protein 70 0.296 -6.915
66 247794_at AT5G58670 ATPLC, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, ATPLC1, phospholipase C1, PLC1, phospholipase C 1, PLC1, phospholipase C1 0.292 -3.473
67 249214_at AT5G42720 [Glycosyl hydrolase family 17 protein] 0.292 -3.294
68 248684_at AT5G48485 DIR1, DEFECTIVE IN INDUCED RESISTANCE 1 0.292 -3.686
69 248772_at AT5G47800 [Phototropic-responsive NPH3 family protein] 0.292 -3.242
70 259765_at AT1G64370 unknown 0.289 -3.991
71 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.289 -4.964
72 263365_at AT2G20550 [HSP40/DnaJ peptide-binding protein] 0.288 -3.061
73 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] 0.287 -2.632
74 259058_at AT3G03470 CYP89A9, cytochrome P450, family 87, subfamily A, polypeptide 9 0.287 -3.725
75 266891_at AT2G44690 ARAC9, Arabidopsis RAC-like 9, ATROP8, RHO-RELATED PROTEIN FROM PLANTS 8, ROP8, RHO-RELATED PROTEIN FROM PLANTS 8 0.286 -3.850
76 249256_at AT5G41620 unknown 0.285 -1.462
77 248685_at AT5G48500 unknown 0.284 -2.830
78 253804_at AT4G28230 unknown 0.284 -1.631
79 252343_at AT3G48610 NPC6, non-specific phospholipase C6 0.284 -0.581
80 252956_at AT4G38580 ATFP6, farnesylated protein 6, FP6, farnesylated protein 6, HIPP26, HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26 0.283 -1.161
81 262785_at AT1G10750 unknown 0.282 -5.265
82 248431_at AT5G51470 [Auxin-responsive GH3 family protein] 0.282 -7.108
83 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 0.280 -1.627
84 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] 0.279 -1.382
85 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 0.279 -6.962
86 261427_at AT1G18670 IBS1, IMPAIRED IN BABA-INDUCED STERILITY 1 0.278 0.145
87 244960_at ATCG01020 RPL32, ribosomal protein L32 -1.019 1.397
88 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.832 1.559
89 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.800 0.551
90 244935_at ATCG01090 NDHI -0.732 0.411
91 244962_at ATCG01050 NDHD -0.675 0.800
92 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.636 1.210
93 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.611 0.953
94 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 -0.610 3.045
95 244961_at ATCG01040 YCF5 -0.592 0.860
96 244903_at ATMG00660 ORF149 -0.533 1.984
97 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.526 0.966
98 244967_at ATCG00630 PSAJ -0.518 -0.148
99 264403_at AT2G25150 [HXXXD-type acyl-transferase family protein] -0.514 5.208
100 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.513 0.498
101 263850_at AT2G04480 unknown -0.508 0.887
102 245017_at ATCG00510 PSAI, photsystem I subunit I -0.507 2.040
103 267264_at AT2G22970 SCPL11, serine carboxypeptidase-like 11 -0.497 -0.714
104 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.492 -1.421
105 244976_at ATCG00720 PETB, photosynthetic electron transfer B -0.487 0.633
106 249773_at AT5G24140 SQP2, squalene monooxygenase 2 -0.469 -1.751
107 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.466 1.501
108 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.460 -1.328
109 245006_at ATCG00340 PSAB -0.453 0.715
110 251766_at AT3G55910 unknown -0.441 1.142
111 255675_at AT4G00480 ATMYC1, myc1 -0.440 -2.345
112 266307_at AT2G27000 CYP705A8, cytochrome P450, family 705, subfamily A, polypeptide 8 -0.433 -0.400
113 259462_at AT1G18940 [Nodulin-like / Major Facilitator Superfamily protein] -0.432 -0.633
114 249934_at AT5G22410 RHS18, root hair specific 18 -0.429 -2.050
115 245050_at ATCG00070 PSBK, photosystem II reaction center protein K precursor -0.428 0.466
116 258675_at AT3G08770 LTP6, lipid transfer protein 6 -0.419 2.303
117 246103_at AT5G28640 AN3, ANGUSTIFOLIA 3, ATGIF1, ARABIDOPSIS GRF1-INTERACTING FACTOR 1, GIF, GRF1-INTERACTING FACTOR, GIF1, GRF1-INTERACTING FACTOR 1 -0.403 2.120
118 245012_at ATCG00440 NDHC -0.395 0.648
119 245023_at ATCG00080 PSBI, photosystem II reaction center protein I -0.385 0.612
120 253910_at AT4G27290 [S-locus lectin protein kinase family protein] -0.373 -1.538
121 254044_at AT4G25820 ATXTH14, XTH14, xyloglucan endotransglucosylase/hydrolase 14, XTR9, xyloglucan endotransglycosylase 9 -0.373 -1.810
122 263192_at AT1G36160 ACC1, acetyl-CoA carboxylase 1, AT-ACC1, EMB22, EMBRYO DEFECTIVE 22, GK, GURKE, GSD1, GLOSSYHEAD 1, PAS3, PASTICCINO 3, SFR3, SENSITIVE TO FREEZING 3 -0.372 2.179
123 251481_at AT3G59730 LecRK-V.6, L-type lectin receptor kinase V.6 -0.368 -0.420
124 265350_at AT2G22620 [Rhamnogalacturonate lyase family protein] -0.365 2.874
125 244978_at ATCG00740 RPOA, RNA polymerase subunit alpha -0.363 0.763
126 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.359 1.318
127 263795_at AT2G24610 ATCNGC14, cyclic nucleotide-gated channel 14, CNGC14, cyclic nucleotide-gated channel 14 -0.357 -2.690
128 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.356 1.541
129 245013_at ATCG00470 ATPE, ATP synthase epsilon chain -0.349 0.991
130 256366_at AT1G66880 [Protein kinase superfamily protein] -0.349 1.510
131 259351_at AT3G05150 [Major facilitator superfamily protein] -0.347 -0.496
132 245004_at ATCG00300 YCF9 -0.341 1.413
133 264137_at AT1G78960 ATLUP2, lupeol synthase 2, LUP2, lupeol synthase 2 -0.330 1.193
134 253522_at AT4G31290 AtGGCT2;2, GGCT2;2, gamma-glutamyl cyclotransferase 2;2 -0.323 -0.190
135 267627_at AT2G42270 [U5 small nuclear ribonucleoprotein helicase] -0.322 1.141
136 245019_at ATCG00530 YCF10 -0.321 0.259
137 263165_at AT1G03060 SPI, SPIRRIG -0.316 0.098
138 267582_at AT2G41970 [Protein kinase superfamily protein] -0.315 -2.381
139 249092_at AT5G43710 [Glycosyl hydrolase family 47 protein] -0.311 0.382
140 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.306 0.480
141 251717_at AT3G55850 LAF3, LONG AFTER FAR-RED 3, LAF3 ISF1, LONG AFTER FAR-RED 3 ISOFORM 1, LAF3 ISF2, LAF3 ISOFORM 2 -0.304 0.967
142 245944_at AT5G19520 ATMSL9, MSL9, mechanosensitive channel of small conductance-like 9 -0.301 0.549
143 250572_at AT5G08210 MIR834A, microRNA834A -0.299 0.146
144 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.292 0.529
145 262887_at AT1G14780 [MAC/Perforin domain-containing protein] -0.289 -2.149
146 254894_at AT4G11840 PLDGAMMA3, phospholipase D gamma 3 -0.285 0.243
147 265902_at AT2G25590 [Plant Tudor-like protein] -0.285 1.723
148 246367_at AT1G51880 RHS6, root hair specific 6 -0.284 -0.973
149 252208_at AT3G50380 [INVOLVED IN: protein localization] -0.282 0.972
150 260109_at AT1G63260 TET10, tetraspanin10 -0.278 1.880
151 245926_at AT5G24740 SHBY, SHRUBBY -0.277 0.324
152 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 -0.277 1.847
153 267191_at AT2G44110 ATMLO15, MILDEW RESISTANCE LOCUS O 15, MLO15, MILDEW RESISTANCE LOCUS O 15 -0.274 -4.307
154 261475_at AT1G14550 [Peroxidase superfamily protein] -0.274 -2.492
155 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.273 1.875
156 260969_at AT1G12240 ATBETAFRUCT4, AtFRUCT4, AtVI2, FRUCT4, fructosidase 4, VAC-INV, VACUOLAR INVERTASE, VI2, vacuolar invertase 2 -0.272 0.664
157 251970_at AT3G53150 UGT73D1, UDP-glucosyl transferase 73D1 -0.272 -2.130
158 264476_at AT1G77130 GUX3, glucuronic acid substitution of xylan 3, PGSIP2, plant glycogenin-like starch initiation protein 2 -0.270 -0.055
159 258228_at AT3G27610 [Nucleotidylyl transferase superfamily protein] -0.269 -0.210
160 265539_at AT2G15830 unknown -0.267 -3.996
161 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.267 -2.008
162 264672_at AT1G09750 [Eukaryotic aspartyl protease family protein] -0.264 -3.786
163 259321_at AT3G01040 GAUT13, galacturonosyltransferase 13 -0.264 -0.190
164 261240_at AT1G32940 ATSBT3.5, SBT3.5 -0.263 0.414
165 251873_at AT3G54230 SUA, suppressor of abi3-5 -0.262 0.066
166 251713_at AT3G56080 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.261 2.649
167 259891_at AT1G72730 [DEA(D/H)-box RNA helicase family protein] -0.260 0.131
168 252303_at AT3G49210 [O-acyltransferase (WSD1-like) family protein] -0.259 -1.732
169 262299_at AT1G27520 [Glycosyl hydrolase family 47 protein] -0.258 0.591
170 257477_at AT1G10660 unknown -0.257 0.053
171 256778_at AT3G13782 NAP1;4, nucleosome assembly protein1;4, NFA04, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, NFA4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4 -0.254 -1.131