4.0:Information of module
root hypoxia p35S
In comparison with 2hr continuous KNO3 and MSX and Gln PeR cell help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009799 specification of symmetry BP 1.917e-06
GO:0010073 meristem maintenance BP 2.599e-06
GO:0009944 polarity specification of adaxial/abaxia... BP 4.865e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.166e-16
GO:0015979 photosynthesis BP 8.661e-12
GO:0000041 transition metal ion transport BP 2.091e-10
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root hypoxia p35S		 Log2 signal ratio
2hr continuous KNO3 and MSX and Gln PeR cell
1 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 0.764 0.276
2 256535_at AT1G33280 ANAC015, NAC domain containing protein 15, BRN1, BEARSKIN 1, NAC015, NAC domain containing protein 15 0.581 0.175
3 267137_at AT2G23410 ACPT, cis-prenyltransferase, AtcPT3, CPT, cis-prenyltransferase, cPT3, cis-prenyltransferase 3 0.561 0.189
4 261691_at AT1G50060 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.493 0.627
5 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 0.475 0.178
6 262283_at AT1G68590 PSRP3/1, plastid-specific ribosomal protein 3/1 0.473 0.329
7 264947_at AT1G77020 [DNAJ heat shock N-terminal domain-containing protein] 0.471 0.056
8 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] 0.454 -0.079
9 261954_at AT1G64510 [Translation elongation factor EF1B/ribosomal protein S6 family protein] 0.450 0.279
10 254632_at AT4G18630 unknown 0.439 -0.215
11 258935_at AT3G10120 unknown 0.437 -0.105
12 251113_at AT5G01370 ACI1, ALC-interacting protein 1, TRM29, TON1 Recruiting Motif 29 0.434 0.285
13 262312_at AT1G70830 MLP28, MLP-like protein 28 0.421 0.211
14 247397_at AT5G62940 DOF5.6, DNA BINDING WITH ONE FINGER 5.6, HCA2, HIGH CAMBIAL ACTIVITY2 0.405 0.193
15 255028_at AT4G09890 unknown 0.400 -0.014
16 262286_at AT1G68585 unknown 0.389 0.268
17 252210_at AT3G50410 OBP1, OBF binding protein 1 0.388 0.242
18 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D 0.386 -0.298
19 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] 0.385 0.217
20 247747_at AT5G59000 [RING/FYVE/PHD zinc finger superfamily protein] 0.381 0.003
21 251491_at AT3G59480 [pfkB-like carbohydrate kinase family protein] 0.377 0.103
22 252248_at AT3G49750 AtRLP44, receptor like protein 44, RLP44, receptor like protein 44 0.372 0.022
23 266325_at AT2G46630 unknown 0.371 0.045
24 252661_at AT3G44450 unknown 0.370 0.140
25 262443_at AT1G47655 [Dof-type zinc finger DNA-binding family protein] 0.362 0.083
26 261653_at AT1G01900 ATSBT1.1, SBTI1.1 0.361 0.143
27 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.357 -0.004
28 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 0.345 0.240
29 255652_at AT4G00950 MEE47, maternal effect embryo arrest 47 0.345 0.011
30 257502_at AT1G78110 unknown 0.344 -0.095
31 248186_at AT5G53880 unknown 0.343 0.316
32 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.339 0.143
33 265995_at AT2G24140 unknown 0.338 0.007
34 249046_at AT5G44400 [FAD-binding Berberine family protein] 0.338 0.140
35 255602_at AT4G01026 PYL7, PYR1-like 7, RCAR2, regulatory components of ABA receptor 2 0.336 0.115
36 258222_at AT3G15680 [Ran BP2/NZF zinc finger-like superfamily protein] 0.334 -0.007
37 247625_at AT5G60200 TMO6, TARGET OF MONOPTEROS 6 0.332 0.106
38 252944_at AT4G39320 [microtubule-associated protein-related] 0.329 0.099
39 250694_at AT5G06710 HAT14, homeobox from Arabidopsis thaliana 0.328 0.122
40 256400_at AT3G06140 LUL4, LOG2-LIKE UBIQUITIN LIGASE4 0.323 -0.050
41 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] 0.321 0.676
42 265494_at AT2G15680 AtCML30, CML30, calmodulin-like 30 0.321 0.315
43 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.319 0.309
44 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.317 -0.006
45 265468_at AT2G37210 LOG3, LONELY GUY 3 0.317 0.109
46 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 0.317 0.244
47 252173_at AT3G50650 [GRAS family transcription factor] 0.316 -0.017
48 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.313 -0.034
49 258008_at AT3G19430 [late embryogenesis abundant protein-related / LEA protein-related] 0.312 0.303
50 262120_at AT1G02950 ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31, GSTF4, glutathione S-transferase F4 0.310 0.136
51 262759_at AT1G10800 unknown 0.309 0.038
52 253010_at AT4G37750 ANT, AINTEGUMENTA, CKC, CKC1, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, DRG, DRAGON 0.308 0.131
53 255016_at AT4G10120 ATSPS4F 0.308 -0.168
54 267012_at AT2G39220 PLA IIB, PLP6, PATATIN-like protein 6 0.308 -0.088
55 253871_at AT4G27440 PORB, protochlorophyllide oxidoreductase B 0.307 0.048
56 253419_at AT4G32780 [phosphoinositide binding] 0.307 -0.163
57 267526_at AT2G30570 PSBW, photosystem II reaction center W 0.305 0.095
58 259373_at AT1G69160 unknown 0.304 -0.040
59 267197_at AT2G30960 unknown 0.304 -0.017
60 249809_at AT5G23910 [ATP binding microtubule motor family protein] 0.303 0.207
61 263913_at AT2G36570 PXC1, PXY/TDR-correlated 1 0.301 0.146
62 255628_at AT4G00850 GIF3, GRF1-interacting factor 3 0.301 0.009
63 245353_at AT4G16000 unknown 0.299 0.571
64 248674_at AT5G48800 [Phototropic-responsive NPH3 family protein] 0.296 -0.046
65 255022_at AT4G10350 ANAC070, NAC domain containing protein 70, BRN2, BEARSKIN 2, NAC070, NAC domain containing protein 70 0.296 0.140
66 247794_at AT5G58670 ATPLC, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, ATPLC1, phospholipase C1, PLC1, phospholipase C 1, PLC1, phospholipase C1 0.292 -0.091
67 249214_at AT5G42720 [Glycosyl hydrolase family 17 protein] 0.292 -0.182
68 248684_at AT5G48485 DIR1, DEFECTIVE IN INDUCED RESISTANCE 1 0.292 -0.241
69 248772_at AT5G47800 [Phototropic-responsive NPH3 family protein] 0.292 -0.167
70 259765_at AT1G64370 unknown 0.289 0.197
71 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.289 0.523
72 263365_at AT2G20550 [HSP40/DnaJ peptide-binding protein] 0.288 -0.049
73 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] 0.287 0.090
74 259058_at AT3G03470 CYP89A9, cytochrome P450, family 87, subfamily A, polypeptide 9 0.287 0.112
75 266891_at AT2G44690 ARAC9, Arabidopsis RAC-like 9, ATROP8, RHO-RELATED PROTEIN FROM PLANTS 8, ROP8, RHO-RELATED PROTEIN FROM PLANTS 8 0.286 0.135
76 249256_at AT5G41620 unknown 0.285 0.040
77 248685_at AT5G48500 unknown 0.284 0.108
78 253804_at AT4G28230 unknown 0.284 0.042
79 252343_at AT3G48610 NPC6, non-specific phospholipase C6 0.284 0.011
80 252956_at AT4G38580 ATFP6, farnesylated protein 6, FP6, farnesylated protein 6, HIPP26, HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26 0.283 -0.006
81 262785_at AT1G10750 unknown 0.282 -0.009
82 248431_at AT5G51470 [Auxin-responsive GH3 family protein] 0.282 0.018
83 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 0.280 0.315
84 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] 0.279 0.025
85 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 0.279 0.268
86 261427_at AT1G18670 IBS1, IMPAIRED IN BABA-INDUCED STERILITY 1 0.278 -0.179
87 244960_at ATCG01020 RPL32, ribosomal protein L32 -1.019 0.023
88 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.832 -0.354
89 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.800 0.003
90 244935_at ATCG01090 NDHI -0.732 0.105
91 244962_at ATCG01050 NDHD -0.675 0.065
92 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.636 -0.027
93 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.611 -0.144
94 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 -0.610 0.241
95 244961_at ATCG01040 YCF5 -0.592 -0.093
96 244903_at ATMG00660 ORF149 -0.533 -0.444
97 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.526 -0.090
98 244967_at ATCG00630 PSAJ -0.518 0.055
99 264403_at AT2G25150 [HXXXD-type acyl-transferase family protein] -0.514 0.020
100 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.513 -0.123
101 263850_at AT2G04480 unknown -0.508 -0.015
102 245017_at ATCG00510 PSAI, photsystem I subunit I -0.507 -0.088
103 267264_at AT2G22970 SCPL11, serine carboxypeptidase-like 11 -0.497 -0.731
104 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.492 -0.302
105 244976_at ATCG00720 PETB, photosynthetic electron transfer B -0.487 -0.045
106 249773_at AT5G24140 SQP2, squalene monooxygenase 2 -0.469 0.124
107 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.466 0.004
108 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.460 0.002
109 245006_at ATCG00340 PSAB -0.453 -0.075
110 251766_at AT3G55910 unknown -0.441 0.202
111 255675_at AT4G00480 ATMYC1, myc1 -0.440 -0.043
112 266307_at AT2G27000 CYP705A8, cytochrome P450, family 705, subfamily A, polypeptide 8 -0.433 -0.976
113 259462_at AT1G18940 [Nodulin-like / Major Facilitator Superfamily protein] -0.432 -0.001
114 249934_at AT5G22410 RHS18, root hair specific 18 -0.429 0.064
115 245050_at ATCG00070 PSBK, photosystem II reaction center protein K precursor -0.428 0.030
116 258675_at AT3G08770 LTP6, lipid transfer protein 6 -0.419 0.091
117 246103_at AT5G28640 AN3, ANGUSTIFOLIA 3, ATGIF1, ARABIDOPSIS GRF1-INTERACTING FACTOR 1, GIF, GRF1-INTERACTING FACTOR, GIF1, GRF1-INTERACTING FACTOR 1 -0.403 0.149
118 245012_at ATCG00440 NDHC -0.395 0.017
119 245023_at ATCG00080 PSBI, photosystem II reaction center protein I -0.385 -0.010
120 253910_at AT4G27290 [S-locus lectin protein kinase family protein] -0.373 -0.730
121 254044_at AT4G25820 ATXTH14, XTH14, xyloglucan endotransglucosylase/hydrolase 14, XTR9, xyloglucan endotransglycosylase 9 -0.373 0.059
122 263192_at AT1G36160 ACC1, acetyl-CoA carboxylase 1, AT-ACC1, EMB22, EMBRYO DEFECTIVE 22, GK, GURKE, GSD1, GLOSSYHEAD 1, PAS3, PASTICCINO 3, SFR3, SENSITIVE TO FREEZING 3 -0.372 -0.253
123 251481_at AT3G59730 LecRK-V.6, L-type lectin receptor kinase V.6 -0.368 -0.258
124 265350_at AT2G22620 [Rhamnogalacturonate lyase family protein] -0.365 -0.129
125 244978_at ATCG00740 RPOA, RNA polymerase subunit alpha -0.363 0.080
126 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.359 -0.185
127 263795_at AT2G24610 ATCNGC14, cyclic nucleotide-gated channel 14, CNGC14, cyclic nucleotide-gated channel 14 -0.357 -0.599
128 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.356 -0.035
129 245013_at ATCG00470 ATPE, ATP synthase epsilon chain -0.349 -0.008
130 256366_at AT1G66880 [Protein kinase superfamily protein] -0.349 -0.547
131 259351_at AT3G05150 [Major facilitator superfamily protein] -0.347 -0.264
132 245004_at ATCG00300 YCF9 -0.341 -0.018
133 264137_at AT1G78960 ATLUP2, lupeol synthase 2, LUP2, lupeol synthase 2 -0.330 -0.019
134 253522_at AT4G31290 AtGGCT2;2, GGCT2;2, gamma-glutamyl cyclotransferase 2;2 -0.323 -0.225
135 267627_at AT2G42270 [U5 small nuclear ribonucleoprotein helicase] -0.322 0.124
136 245019_at ATCG00530 YCF10 -0.321 -0.163
137 263165_at AT1G03060 SPI, SPIRRIG -0.316 -0.239
138 267582_at AT2G41970 [Protein kinase superfamily protein] -0.315 -0.195
139 249092_at AT5G43710 [Glycosyl hydrolase family 47 protein] -0.311 -0.360
140 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.306 -0.019
141 251717_at AT3G55850 LAF3, LONG AFTER FAR-RED 3, LAF3 ISF1, LONG AFTER FAR-RED 3 ISOFORM 1, LAF3 ISF2, LAF3 ISOFORM 2 -0.304 -0.294
142 245944_at AT5G19520 ATMSL9, MSL9, mechanosensitive channel of small conductance-like 9 -0.301 -0.130
143 250572_at AT5G08210 MIR834A, microRNA834A -0.299 -0.168
144 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.292 -0.123
145 262887_at AT1G14780 [MAC/Perforin domain-containing protein] -0.289 -0.441
146 254894_at AT4G11840 PLDGAMMA3, phospholipase D gamma 3 -0.285 -0.398
147 265902_at AT2G25590 [Plant Tudor-like protein] -0.285 -0.245
148 246367_at AT1G51880 RHS6, root hair specific 6 -0.284 0.049
149 252208_at AT3G50380 [INVOLVED IN: protein localization] -0.282 -0.174
150 260109_at AT1G63260 TET10, tetraspanin10 -0.278 -0.234
151 245926_at AT5G24740 SHBY, SHRUBBY -0.277 -0.253
152 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 -0.277 -0.180
153 267191_at AT2G44110 ATMLO15, MILDEW RESISTANCE LOCUS O 15, MLO15, MILDEW RESISTANCE LOCUS O 15 -0.274 -0.081
154 261475_at AT1G14550 [Peroxidase superfamily protein] -0.274 0.244
155 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.273 -0.211
156 260969_at AT1G12240 ATBETAFRUCT4, AtFRUCT4, AtVI2, FRUCT4, fructosidase 4, VAC-INV, VACUOLAR INVERTASE, VI2, vacuolar invertase 2 -0.272 -0.277
157 251970_at AT3G53150 UGT73D1, UDP-glucosyl transferase 73D1 -0.272 -0.379
158 264476_at AT1G77130 GUX3, glucuronic acid substitution of xylan 3, PGSIP2, plant glycogenin-like starch initiation protein 2 -0.270 -0.495
159 258228_at AT3G27610 [Nucleotidylyl transferase superfamily protein] -0.269 -0.171
160 265539_at AT2G15830 unknown -0.267 0.270
161 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.267 0.090
162 264672_at AT1G09750 [Eukaryotic aspartyl protease family protein] -0.264 -0.272
163 259321_at AT3G01040 GAUT13, galacturonosyltransferase 13 -0.264 -0.319
164 261240_at AT1G32940 ATSBT3.5, SBT3.5 -0.263 -0.313
165 251873_at AT3G54230 SUA, suppressor of abi3-5 -0.262 -0.138
166 251713_at AT3G56080 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.261 -0.179
167 259891_at AT1G72730 [DEA(D/H)-box RNA helicase family protein] -0.260 -0.149
168 252303_at AT3G49210 [O-acyltransferase (WSD1-like) family protein] -0.259 -0.273
169 262299_at AT1G27520 [Glycosyl hydrolase family 47 protein] -0.258 -0.076
170 257477_at AT1G10660 unknown -0.257 -0.120
171 256778_at AT3G13782 NAP1;4, nucleosome assembly protein1;4, NFA04, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, NFA4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4 -0.254 -0.219