4.0:Information of module
root hypoxia p35S
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009799 specification of symmetry BP 1.917e-06
GO:0010073 meristem maintenance BP 2.599e-06
GO:0009944 polarity specification of adaxial/abaxia... BP 4.865e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.166e-16
GO:0015979 photosynthesis BP 8.661e-12
GO:0000041 transition metal ion transport BP 2.091e-10
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root hypoxia p35S		 Log2 signal ratio
Leafminer damaged seedlings
1 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 0.764 -0.031
2 256535_at AT1G33280 ANAC015, NAC domain containing protein 15, BRN1, BEARSKIN 1, NAC015, NAC domain containing protein 15 0.581 0.024
3 267137_at AT2G23410 ACPT, cis-prenyltransferase, AtcPT3, CPT, cis-prenyltransferase, cPT3, cis-prenyltransferase 3 0.561 -0.008
4 261691_at AT1G50060 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.493 -0.098
5 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 0.475 0.427
6 262283_at AT1G68590 PSRP3/1, plastid-specific ribosomal protein 3/1 0.473 -0.173
7 264947_at AT1G77020 [DNAJ heat shock N-terminal domain-containing protein] 0.471 -0.403
8 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] 0.454 -0.138
9 261954_at AT1G64510 [Translation elongation factor EF1B/ribosomal protein S6 family protein] 0.450 -0.121
10 254632_at AT4G18630 unknown 0.439 0.323
11 258935_at AT3G10120 unknown 0.437 0.019
12 251113_at AT5G01370 ACI1, ALC-interacting protein 1, TRM29, TON1 Recruiting Motif 29 0.434 -0.121
13 262312_at AT1G70830 MLP28, MLP-like protein 28 0.421 0.072
14 247397_at AT5G62940 DOF5.6, DNA BINDING WITH ONE FINGER 5.6, HCA2, HIGH CAMBIAL ACTIVITY2 0.405 -0.070
15 255028_at AT4G09890 unknown 0.400 -0.490
16 262286_at AT1G68585 unknown 0.389 -0.401
17 252210_at AT3G50410 OBP1, OBF binding protein 1 0.388 0.320
18 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D 0.386 -0.001
19 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] 0.385 -0.112
20 247747_at AT5G59000 [RING/FYVE/PHD zinc finger superfamily protein] 0.381 -0.104
21 251491_at AT3G59480 [pfkB-like carbohydrate kinase family protein] 0.377 0.058
22 252248_at AT3G49750 AtRLP44, receptor like protein 44, RLP44, receptor like protein 44 0.372 -0.141
23 266325_at AT2G46630 unknown 0.371 -0.361
24 252661_at AT3G44450 unknown 0.370 -0.018
25 262443_at AT1G47655 [Dof-type zinc finger DNA-binding family protein] 0.362 -0.026
26 261653_at AT1G01900 ATSBT1.1, SBTI1.1 0.361 -0.298
27 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.357 0.788
28 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 0.345 -0.051
29 255652_at AT4G00950 MEE47, maternal effect embryo arrest 47 0.345 -0.472
30 257502_at AT1G78110 unknown 0.344 -0.190
31 248186_at AT5G53880 unknown 0.343 -0.423
32 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.339 -0.299
33 265995_at AT2G24140 unknown 0.338 -0.035
34 249046_at AT5G44400 [FAD-binding Berberine family protein] 0.338 0.052
35 255602_at AT4G01026 PYL7, PYR1-like 7, RCAR2, regulatory components of ABA receptor 2 0.336 0.303
36 258222_at AT3G15680 [Ran BP2/NZF zinc finger-like superfamily protein] 0.334 -0.235
37 247625_at AT5G60200 TMO6, TARGET OF MONOPTEROS 6 0.332 -0.100
38 252944_at AT4G39320 [microtubule-associated protein-related] 0.329 0.431
39 250694_at AT5G06710 HAT14, homeobox from Arabidopsis thaliana 0.328 -0.029
40 256400_at AT3G06140 LUL4, LOG2-LIKE UBIQUITIN LIGASE4 0.323 -0.508
41 265050_at AT1G52070 [Mannose-binding lectin superfamily protein] 0.321 0.012
42 265494_at AT2G15680 AtCML30, CML30, calmodulin-like 30 0.321 -0.171
43 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.319 0.048
44 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.317 -0.035
45 265468_at AT2G37210 LOG3, LONELY GUY 3 0.317 -0.010
46 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 0.317 -0.020
47 252173_at AT3G50650 [GRAS family transcription factor] 0.316 0.240
48 260672_at AT1G19480 [DNA glycosylase superfamily protein] 0.313 0.001
49 258008_at AT3G19430 [late embryogenesis abundant protein-related / LEA protein-related] 0.312 0.067
50 262120_at AT1G02950 ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31, GSTF4, glutathione S-transferase F4 0.310 -0.106
51 262759_at AT1G10800 unknown 0.309 0.009
52 253010_at AT4G37750 ANT, AINTEGUMENTA, CKC, CKC1, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, DRG, DRAGON 0.308 -0.214
53 255016_at AT4G10120 ATSPS4F 0.308 -0.557
54 267012_at AT2G39220 PLA IIB, PLP6, PATATIN-like protein 6 0.308 -0.075
55 253871_at AT4G27440 PORB, protochlorophyllide oxidoreductase B 0.307 0.136
56 253419_at AT4G32780 [phosphoinositide binding] 0.307 0.072
57 267526_at AT2G30570 PSBW, photosystem II reaction center W 0.305 0.001
58 259373_at AT1G69160 unknown 0.304 -0.512
59 267197_at AT2G30960 unknown 0.304 -0.255
60 249809_at AT5G23910 [ATP binding microtubule motor family protein] 0.303 -0.091
61 263913_at AT2G36570 PXC1, PXY/TDR-correlated 1 0.301 -0.432
62 255628_at AT4G00850 GIF3, GRF1-interacting factor 3 0.301 0.088
63 245353_at AT4G16000 unknown 0.299 0.661
64 248674_at AT5G48800 [Phototropic-responsive NPH3 family protein] 0.296 -0.320
65 255022_at AT4G10350 ANAC070, NAC domain containing protein 70, BRN2, BEARSKIN 2, NAC070, NAC domain containing protein 70 0.296 0.011
66 247794_at AT5G58670 ATPLC, ARABIDOPSIS THALIANA PHOSPHOLIPASE C, ATPLC1, phospholipase C1, PLC1, phospholipase C 1, PLC1, phospholipase C1 0.292 0.357
67 249214_at AT5G42720 [Glycosyl hydrolase family 17 protein] 0.292 -0.396
68 248684_at AT5G48485 DIR1, DEFECTIVE IN INDUCED RESISTANCE 1 0.292 -0.173
69 248772_at AT5G47800 [Phototropic-responsive NPH3 family protein] 0.292 -0.438
70 259765_at AT1G64370 unknown 0.289 0.004
71 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.289 0.191
72 263365_at AT2G20550 [HSP40/DnaJ peptide-binding protein] 0.288 -0.098
73 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] 0.287 -0.184
74 259058_at AT3G03470 CYP89A9, cytochrome P450, family 87, subfamily A, polypeptide 9 0.287 0.205
75 266891_at AT2G44690 ARAC9, Arabidopsis RAC-like 9, ATROP8, RHO-RELATED PROTEIN FROM PLANTS 8, ROP8, RHO-RELATED PROTEIN FROM PLANTS 8 0.286 -0.066
76 249256_at AT5G41620 unknown 0.285 0.057
77 248685_at AT5G48500 unknown 0.284 -0.145
78 253804_at AT4G28230 unknown 0.284 0.049
79 252343_at AT3G48610 NPC6, non-specific phospholipase C6 0.284 -0.252
80 252956_at AT4G38580 ATFP6, farnesylated protein 6, FP6, farnesylated protein 6, HIPP26, HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26 0.283 0.180
81 262785_at AT1G10750 unknown 0.282 -0.153
82 248431_at AT5G51470 [Auxin-responsive GH3 family protein] 0.282 -0.013
83 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 0.280 -0.139
84 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] 0.279 0.075
85 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 0.279 -0.093
86 261427_at AT1G18670 IBS1, IMPAIRED IN BABA-INDUCED STERILITY 1 0.278 0.013
87 244960_at ATCG01020 RPL32, ribosomal protein L32 -1.019 -0.039
88 244985_at ATCG00810 RPL22, ribosomal protein L22 -0.832 -0.110
89 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.800 -0.106
90 244935_at ATCG01090 NDHI -0.732 -0.049
91 244962_at ATCG01050 NDHD -0.675 -0.093
92 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.636 -0.069
93 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.611 -0.104
94 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 -0.610 0.009
95 244961_at ATCG01040 YCF5 -0.592 -0.045
96 244903_at ATMG00660 ORF149 -0.533 0.075
97 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.526 -0.094
98 244967_at ATCG00630 PSAJ -0.518 -0.069
99 264403_at AT2G25150 [HXXXD-type acyl-transferase family protein] -0.514 0.005
100 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.513 -0.109
101 263850_at AT2G04480 unknown -0.508 0.047
102 245017_at ATCG00510 PSAI, photsystem I subunit I -0.507 -0.102
103 267264_at AT2G22970 SCPL11, serine carboxypeptidase-like 11 -0.497 0.011
104 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.492 -0.033
105 244976_at ATCG00720 PETB, photosynthetic electron transfer B -0.487 -0.003
106 249773_at AT5G24140 SQP2, squalene monooxygenase 2 -0.469 0.009
107 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.466 -0.064
108 254107_at AT4G25220 AtG3Pp2, glycerol-3-phosphate permease 2, G3Pp2, glycerol-3-phosphate permease 2, RHS15, root hair specific 15 -0.460 -0.058
109 245006_at ATCG00340 PSAB -0.453 -0.022
110 251766_at AT3G55910 unknown -0.441 0.304
111 255675_at AT4G00480 ATMYC1, myc1 -0.440 -0.214
112 266307_at AT2G27000 CYP705A8, cytochrome P450, family 705, subfamily A, polypeptide 8 -0.433 -0.015
113 259462_at AT1G18940 [Nodulin-like / Major Facilitator Superfamily protein] -0.432 -0.011
114 249934_at AT5G22410 RHS18, root hair specific 18 -0.429 -0.027
115 245050_at ATCG00070 PSBK, photosystem II reaction center protein K precursor -0.428 -0.031
116 258675_at AT3G08770 LTP6, lipid transfer protein 6 -0.419 0.171
117 246103_at AT5G28640 AN3, ANGUSTIFOLIA 3, ATGIF1, ARABIDOPSIS GRF1-INTERACTING FACTOR 1, GIF, GRF1-INTERACTING FACTOR, GIF1, GRF1-INTERACTING FACTOR 1 -0.403 -0.006
118 245012_at ATCG00440 NDHC -0.395 -0.005
119 245023_at ATCG00080 PSBI, photosystem II reaction center protein I -0.385 -0.028
120 253910_at AT4G27290 [S-locus lectin protein kinase family protein] -0.373 -0.007
121 254044_at AT4G25820 ATXTH14, XTH14, xyloglucan endotransglucosylase/hydrolase 14, XTR9, xyloglucan endotransglycosylase 9 -0.373 0.042
122 263192_at AT1G36160 ACC1, acetyl-CoA carboxylase 1, AT-ACC1, EMB22, EMBRYO DEFECTIVE 22, GK, GURKE, GSD1, GLOSSYHEAD 1, PAS3, PASTICCINO 3, SFR3, SENSITIVE TO FREEZING 3 -0.372 -0.182
123 251481_at AT3G59730 LecRK-V.6, L-type lectin receptor kinase V.6 -0.368 -0.005
124 265350_at AT2G22620 [Rhamnogalacturonate lyase family protein] -0.365 -0.120
125 244978_at ATCG00740 RPOA, RNA polymerase subunit alpha -0.363 -0.041
126 258863_at AT3G03300 ATDCL2, DICER-LIKE 2, DCL2, dicer-like 2 -0.359 -0.180
127 263795_at AT2G24610 ATCNGC14, cyclic nucleotide-gated channel 14, CNGC14, cyclic nucleotide-gated channel 14 -0.357 0.033
128 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.356 -0.104
129 245013_at ATCG00470 ATPE, ATP synthase epsilon chain -0.349 -0.037
130 256366_at AT1G66880 [Protein kinase superfamily protein] -0.349 0.259
131 259351_at AT3G05150 [Major facilitator superfamily protein] -0.347 -0.053
132 245004_at ATCG00300 YCF9 -0.341 -0.023
133 264137_at AT1G78960 ATLUP2, lupeol synthase 2, LUP2, lupeol synthase 2 -0.330 -0.058
134 253522_at AT4G31290 AtGGCT2;2, GGCT2;2, gamma-glutamyl cyclotransferase 2;2 -0.323 0.028
135 267627_at AT2G42270 [U5 small nuclear ribonucleoprotein helicase] -0.322 -0.099
136 245019_at ATCG00530 YCF10 -0.321 -0.066
137 263165_at AT1G03060 SPI, SPIRRIG -0.316 -0.049
138 267582_at AT2G41970 [Protein kinase superfamily protein] -0.315 0.006
139 249092_at AT5G43710 [Glycosyl hydrolase family 47 protein] -0.311 -0.025
140 244979_at ATCG00750 RPS11, ribosomal protein S11 -0.306 -0.057
141 251717_at AT3G55850 LAF3, LONG AFTER FAR-RED 3, LAF3 ISF1, LONG AFTER FAR-RED 3 ISOFORM 1, LAF3 ISF2, LAF3 ISOFORM 2 -0.304 0.006
142 245944_at AT5G19520 ATMSL9, MSL9, mechanosensitive channel of small conductance-like 9 -0.301 -0.032
143 250572_at AT5G08210 MIR834A, microRNA834A -0.299 -0.072
144 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.292 -0.079
145 262887_at AT1G14780 [MAC/Perforin domain-containing protein] -0.289 0.517
146 254894_at AT4G11840 PLDGAMMA3, phospholipase D gamma 3 -0.285 -0.062
147 265902_at AT2G25590 [Plant Tudor-like protein] -0.285 -0.009
148 246367_at AT1G51880 RHS6, root hair specific 6 -0.284 0.012
149 252208_at AT3G50380 [INVOLVED IN: protein localization] -0.282 -0.045
150 260109_at AT1G63260 TET10, tetraspanin10 -0.278 -0.285
151 245926_at AT5G24740 SHBY, SHRUBBY -0.277 -0.065
152 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 -0.277 -0.589
153 267191_at AT2G44110 ATMLO15, MILDEW RESISTANCE LOCUS O 15, MLO15, MILDEW RESISTANCE LOCUS O 15 -0.274 -0.057
154 261475_at AT1G14550 [Peroxidase superfamily protein] -0.274 0.181
155 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.273 -0.007
156 260969_at AT1G12240 ATBETAFRUCT4, AtFRUCT4, AtVI2, FRUCT4, fructosidase 4, VAC-INV, VACUOLAR INVERTASE, VI2, vacuolar invertase 2 -0.272 0.206
157 251970_at AT3G53150 UGT73D1, UDP-glucosyl transferase 73D1 -0.272 0.182
158 264476_at AT1G77130 GUX3, glucuronic acid substitution of xylan 3, PGSIP2, plant glycogenin-like starch initiation protein 2 -0.270 -0.064
159 258228_at AT3G27610 [Nucleotidylyl transferase superfamily protein] -0.269 0.130
160 265539_at AT2G15830 unknown -0.267 0.140
161 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.267 0.053
162 264672_at AT1G09750 [Eukaryotic aspartyl protease family protein] -0.264 -0.327
163 259321_at AT3G01040 GAUT13, galacturonosyltransferase 13 -0.264 0.076
164 261240_at AT1G32940 ATSBT3.5, SBT3.5 -0.263 0.445
165 251873_at AT3G54230 SUA, suppressor of abi3-5 -0.262 -0.110
166 251713_at AT3G56080 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.261 -0.047
167 259891_at AT1G72730 [DEA(D/H)-box RNA helicase family protein] -0.260 -0.075
168 252303_at AT3G49210 [O-acyltransferase (WSD1-like) family protein] -0.259 0.507
169 262299_at AT1G27520 [Glycosyl hydrolase family 47 protein] -0.258 -0.072
170 257477_at AT1G10660 unknown -0.257 -0.095
171 256778_at AT3G13782 NAP1;4, nucleosome assembly protein1;4, NFA04, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, NFA4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4 -0.254 0.073