4.0:Information of module
kyp protoplast
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 7.932e-08
GO:1901700 response to oxygen-containing compound BP 2.137e-07
GO:0010033 response to organic substance BP 7.398e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044711 single-organism biosynthetic process BP 1.916e-09
GO:0009637 response to blue light BP 2.198e-09
GO:0005975 carbohydrate metabolic process BP 7.722e-09
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
kyp protoplast		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 252739_at AT3G43250 unknown 0.955 -0.047
2 257625_at AT3G26230 CYP71B24, cytochrome P450, family 71, subfamily B, polypeptide 24 0.894 -0.017
3 265119_at AT1G62570 FMO GS-OX4, flavin-monooxygenase glucosinolate S-oxygenase 4 0.869 0.109
4 256991_at AT3G28600 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.860 0.016
5 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.859 -0.141
6 262866_at AT1G64940 CYP89A6, cytochrome P450, family 87, subfamily A, polypeptide 6 0.851 -0.109
7 261545_at AT1G63530 unknown 0.842 -0.032
8 258059_at AT3G29035 ANAC059, Arabidopsis NAC domain containing protein 59, ATNAC3, NAC domain containing protein 3, NAC3, NAC domain containing protein 3, ORS1, ORE1 SISTER1 0.815 -0.081
9 264288_at AT1G62045 unknown 0.729 0.011
10 256989_at AT3G28580 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.728 -0.063
11 260517_at AT1G51420 ATSPP1, SUCROSE-PHOSPHATASE 1, SPP1, sucrose-phosphatase 1 0.660 0.018
12 248848_at AT5G46520 VICTR, VARIATION IN COMPOUND TRIGGERED ROOT growth response 0.650 -0.032
13 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.645 -0.635
14 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] 0.638 -0.026
15 262719_at AT1G43590 unknown 0.611 -0.156
16 249461_at AT5G39640 [Putative endonuclease or glycosyl hydrolase] 0.578 -0.056
17 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE 0.577 -0.123
18 262902_x_at AT1G59930 [MADS-box family protein] 0.566 -0.184
19 263367_at AT2G20460 [copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 0.540 0.075
20 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.530 -0.092
21 249188_at AT5G42830 [HXXXD-type acyl-transferase family protein] 0.509 -0.150
22 249284_at AT5G41810 unknown 0.495 0.070
23 265116_at AT1G62480 [Vacuolar calcium-binding protein-related] 0.490 0.109
24 249393_at AT5G40170 AtRLP54, receptor like protein 54, RLP54, receptor like protein 54 0.489 0.129
25 257636_at AT3G26200 CYP71B22, cytochrome P450, family 71, subfamily B, polypeptide 22 0.472 0.055
26 260272_at AT1G80570 [RNI-like superfamily protein] 0.471 -0.034
27 258434_at AT3G16770 ATEBP, ethylene-responsive element binding protein, EBP, ethylene-responsive element binding protein, ERF72, ETHYLENE RESPONSE FACTOR 72, RAP2.3, RELATED TO AP2 3 0.443 -0.411
28 257315_at AT3G30775 AT-POX, ATPDH, ATPOX, ARABIDOPSIS THALIANA PROLINE OXIDASE, ERD5, EARLY RESPONSIVE TO DEHYDRATION 5, PDH1, proline dehydrogenase 1, PRO1, PRODH, PROLINE DEHYDROGENASE 0.442 0.044
29 260273_at AT1G80550 [Pentatricopeptide repeat (PPR) superfamily protein] 0.435 0.070
30 264232_at AT1G67470 [Protein kinase superfamily protein] 0.433 0.024
31 257635_at AT3G26280 CYP71B4, cytochrome P450, family 71, subfamily B, polypeptide 4 0.429 -0.045
32 246869_at AT5G26020 [similar to Glutamic acid-rich protein precursor (GB:P13816)] 0.424 -0.024
33 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 0.420 0.235
34 252170_at AT3G50480 HR4, homolog of RPW8 4 0.419 -0.212
35 247253_at AT5G64790 [O-Glycosyl hydrolases family 17 protein] 0.416 0.063
36 249331_at AT5G40950 RPL27, ribosomal protein large subunit 27 0.412 0.252
37 258190_at AT3G29080 unknown 0.404 0.022
38 262916_at AT1G59700 ATGSTU16, glutathione S-transferase TAU 16, GSTU16, glutathione S-transferase TAU 16 0.396 0.092
39 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 0.386 -0.048
40 245193_at AT1G67810 SUFE2, sulfur E2 0.386 0.056
41 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.373 0.037
42 250090_at AT5G17330 GAD, glutamate decarboxylase, GAD1, GLUTAMATE DECARBOXYLASE 1 0.351 0.114
43 261905_at AT1G65070 [DNA mismatch repair protein MutS, type 2] 0.347 -0.053
44 262126_at AT1G59620 CW9 0.339 0.130
45 252736_at AT3G43210 ATNACK2, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, NACK2, NPK1-ACTIVATING KINESIN 2, TES, TETRASPORE 0.332 0.320
46 256877_at AT3G26470 [Powdery mildew resistance protein, RPW8 domain] 0.332 -0.034
47 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.321 -0.082
48 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.317 0.041
49 249283_at AT5G41800 [Transmembrane amino acid transporter family protein] 0.315 -0.007
50 259737_at AT1G64400 LACS3, long-chain acyl-CoA synthetase 3 0.314 0.006
51 256969_at AT3G21080 [ABC transporter-related] 0.314 0.183
52 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 0.313 -0.130
53 249464_at AT5G39710 EMB2745, EMBRYO DEFECTIVE 2745 0.307 -0.066
54 252081_at AT3G51910 AT-HSFA7A, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, HSFA7A, heat shock transcription factor A7A 0.307 -0.078
55 252677_at AT3G44320 AtNIT3, NITRILASE 3, NIT3, nitrilase 3 0.304 0.047
56 256866_at AT3G26380 [Melibiase family protein] 0.302 0.041
57 258037_at AT3G21230 4CL5, 4-coumarate:CoA ligase 5 0.297 -0.031
58 249214_at AT5G42720 [Glycosyl hydrolase family 17 protein] 0.295 0.068
59 263126_at AT1G78460 [SOUL heme-binding family protein] 0.291 -0.024
60 249579_at AT5G37680 ARLA1A, ADP-ribosylation factor-like A1A, ATARLA1A, ADP-ribosylation factor-like A1A 0.288 0.193
61 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 0.287 0.123
62 249274_at AT5G41860 unknown 0.285 0.017
63 264629_at AT1G65540 AtLETM2, LETM2, leucine zipper-EF-hand-containing transmembrane protein 2 0.281 -0.108
64 247718_at AT5G59310 LTP4, lipid transfer protein 4 0.278 0.093
65 256653_at AT3G18870 [Mitochondrial transcription termination factor family protein] 0.276 0.032
66 247717_at AT5G59320 LTP3, lipid transfer protein 3 0.270 -0.055
67 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.269 0.035
68 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] 0.269 0.049
69 245778_at AT1G73530 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.268 -0.063
70 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 0.266 -0.111
71 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.266 0.065
72 257314_at AT3G26590 [MATE efflux family protein] 0.262 0.128
73 265732_at AT2G01300 unknown 0.259 0.030
74 262561_at AT1G34340 [alpha/beta-Hydrolases superfamily protein] 0.259 0.140
75 262033_at AT1G37140 MCT1, MEI2 C-terminal RRM only like 1 0.259 -0.015
76 264162_at AT1G65290 mtACP2, mitochondrial acyl carrier protein 2 0.257 0.047
77 252252_at AT3G49180 RID3, ROOT INITIATION DEFECTIVE 3 0.253 0.017
78 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 0.252 0.037
79 257827_at AT3G26630 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.251 0.081
80 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 0.251 0.409
81 245779_at AT1G73510 unknown 0.251 -0.128
82 249091_at AT5G43860 ATCLH2, ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, CLH2, chlorophyllase 2 0.250 0.068
83 261958_at AT1G64500 [Glutaredoxin family protein] 0.244 -0.082
84 260083_at AT1G63220 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.239 -0.048
85 259676_at AT1G77730 [Pleckstrin homology (PH) domain superfamily protein] 0.239 -0.039
86 252462_at AT3G47250 unknown -1.322 0.513
87 252346_at AT3G48650 [pseudogene] -1.222 0.197
88 252533_at AT3G46110 [LOCATED IN: plasma membrane] -0.859 -0.213
89 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 -0.843 0.078
90 260396_at AT1G69720 HO3, heme oxygenase 3 -0.718 0.019
91 248683_at AT5G48490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.698 0.236
92 252212_at AT3G50310 MAPKKK20, mitogen-activated protein kinase kinase kinase 20, MKKK20, MAPKK kinase 20 -0.598 0.030
93 261402_at AT1G79670 RFO1, RESISTANCE TO FUSARIUM OXYSPORUM 1, WAKL22 -0.524 -0.113
94 252215_at AT3G50240 KICP-02 -0.512 -0.068
95 261544_at AT1G63540 [hydroxyproline-rich glycoprotein family protein] -0.512 0.088
96 245654_at AT1G56540 [Disease resistance protein (TIR-NBS-LRR class) family] -0.506 -0.107
97 249604_x_at AT5G37230 [RING/U-box superfamily protein] -0.497 -0.213
98 252676_at AT3G44280 unknown -0.476 0.017
99 252179_at AT3G50760 GATL2, galacturonosyltransferase-like 2 -0.467 -0.060
100 261681_at AT1G47340 [F-box and associated interaction domains-containing protein] -0.448 -0.916
101 247028_at AT5G67100 ICU2, INCURVATA2 -0.440 -0.036
102 258191_at AT3G29100 ATVTI13, VTI13, vesicle transport V-snare 13 -0.427 -0.021
103 262160_at AT1G52590 [Putative thiol-disulphide oxidoreductase DCC] -0.381 -0.075
104 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 -0.369 -0.234
105 251167_at AT3G63360 [defensin-related] -0.367 0.557
106 265993_at AT2G24160 [pseudogene] -0.363 -0.060
107 257846_at AT3G12910 [NAC (No Apical Meristem) domain transcriptional regulator superfamily protein] -0.360 -0.071
108 260390_at AT1G73940 unknown -0.357 -0.013
109 249265_at AT5G41700 ATUBC8, ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, UBC8, ubiquitin conjugating enzyme 8 -0.349 0.096
110 253035_at AT4G38240 CGL, COMPLEX GLYCAN LESS, CGL1, COMPLEX GLYCAN LESS 1, GNTI, N-ACETYLGLUCOSAMINYLTRANSFERASE I -0.348 0.049
111 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -0.343 0.069
112 248322_at AT5G52760 [Copper transport protein family] -0.342 -0.112
113 250942_at AT5G03350 [Legume lectin family protein] -0.340 0.021
114 264920_at AT1G60550 DHNS, ECHID, enoyl-CoA hydratase/isomerase D -0.340 -0.009
115 257744_at AT3G29230 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.336 -0.177
116 249032_at AT5G44910 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.335 -0.056
117 246004_at AT5G20630 ATGER3, ARABIDOPSIS THALIANA GERMIN 3, GER3, germin 3, GLP3, GERMIN-LIKE PROTEIN 3, GLP3A, GLP3B -0.329 0.069
118 249216_at AT5G42240 scpl42, serine carboxypeptidase-like 42 -0.323 0.048
119 264104_at AT2G13750 [CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-17 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.322 -0.064
120 249008_at AT5G44680 [DNA glycosylase superfamily protein] -0.322 0.503
121 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 -0.317 -0.011
122 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 -0.313 0.068
123 258182_at AT3G21500 DXL1, DXS-like 1, DXPS1, 1-deoxy-D-xylulose 5-phosphate synthase 1, DXS2, 1-deoxy-D-xylulose 5-phosphate (DXP) synthase 2 -0.309 -0.285
124 246095_at AT5G19310 CHR23, chromatin remodeling 23 -0.307 -0.017
125 260981_at AT1G53460 unknown -0.305 -0.081
126 263142_at AT1G65230 [Uncharacterized conserved protein (DUF2358)] -0.302 -0.056
127 252214_at AT3G50260 ATERF#011, CEJ1, cooperatively regulated by ethylene and jasmonate 1, DEAR1, DREB AND EAR MOTIF PROTEIN 1 -0.301 -0.063
128 262910_at AT1G59710 unknown -0.300 -0.109
129 251987_at AT3G53280 CYP71B5, cytochrome p450 71b5 -0.292 -0.045
130 249158_at AT5G43430 ETFBETA, electron transfer flavoprotein beta -0.291 -0.153
131 255433_at AT4G03210 XTH9, xyloglucan endotransglucosylase/hydrolase 9 -0.289 0.005
132 256796_at AT3G22210 unknown -0.286 0.085
133 249559_at AT5G38320 unknown -0.286 0.057
134 256985_at AT3G13540 ATMYB5, myb domain protein 5, MYB5, myb domain protein 5 -0.275 0.139
135 252619_at AT3G45210 unknown -0.274 -0.093
136 262181_at AT1G78060 [Glycosyl hydrolase family protein] -0.270 -0.033
137 249019_at AT5G44780 MORF4, multiple organellar RNA editing factor 4 -0.267 0.013
138 263737_at AT1G60010 unknown -0.255 0.045
139 254614_at AT4G19191 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.255 -0.046
140 261782_at AT1G76110 [HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain] -0.254 0.097
141 260033_at AT1G68760 ATNUDT1, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 1, ATNUDX1, nudix hydrolase 1, NUDX1, nudix hydrolase 1, NUDX1, NUDIX HYDROLASE 1 -0.252 0.065
142 246332_at AT3G44830 [Lecithin:cholesterol acyltransferase family protein] -0.246 -0.056
143 257832_at AT3G26740 CCL, CCR-like -0.242 -0.193
144 265144_at AT1G51170 AGC2-3, AGC2 kinase 3, UCN, UNICORN -0.237 -0.060
145 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] -0.234 0.086
146 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.233 0.064
147 256210_at AT1G50950 [INVOLVED IN: cell redox homeostasis] -0.233 0.099
148 258138_at AT3G24495 ATMSH7, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MSH6-2, MUTS HOMOLOG 6-2, MSH7, MUTS homolog 7 -0.231 -0.105
149 260107_at AT1G66430 [pfkB-like carbohydrate kinase family protein] -0.230 -0.029
150 248533_at AT5G50020 [DHHC-type zinc finger family protein] -0.229 0.020
151 259892_at AT1G72610 ATGER1, A. THALIANA GERMIN-LIKE PROTEIN 1, GER1, germin-like protein 1, GLP1, GERMIN-LIKE PROTEIN 1 -0.222 0.065
152 248197_at AT5G54190 PORA, protochlorophyllide oxidoreductase A -0.222 0.009
153 257918_at AT3G23230 AtERF98, AtTDR1, ERF98, Ethylene Response Factor 98, TDR1, Transcriptional Regulator of Defense Response 1 -0.222 -0.190
154 265659_at AT2G25440 AtRLP20, receptor like protein 20, RLP20, receptor like protein 20 -0.221 -0.039
155 260065_at AT1G73760 [RING/U-box superfamily protein] -0.218 -0.134
156 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -0.218 -0.052
157 254506_at AT4G20140 GSO1, GASSHO1 -0.217 -0.104
158 264165_at AT1G65410 ABCI13, ATP-binding cassette I13, ATNAP11, non-intrinsic ABC protein 11, NAP11, non-intrinsic ABC protein 11, TGD3, TRIGALACTOSYLDIACYLGLYCEROL 3 -0.212 -0.130
159 264223_s_at AT3G16030 CES101, CALLUS EXPRESSION OF RBCS 101, RFO3, RESISTANCE TO FUSARIUM OXYSPORUM 3 -0.211 0.079
160 249146_at AT5G43310 [COP1-interacting protein-related] -0.209 -0.089
161 253966_at AT4G26520 AtFBA7, FBA7, fructose-bisphosphate aldolase 7 -0.208 -0.103
162 262667_at AT1G62810 CuAO1, COPPER AMINE OXIDASE1 -0.207 0.005
163 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.196 -0.024
164 262346_at AT1G63980 [D111/G-patch domain-containing protein] -0.196 -0.003
165 260368_at AT1G69700 ATHVA22C, HVA22 homologue C, HVA22C, HVA22 homologue C -0.195 -0.095
166 266277_at AT2G29310 [NAD(P)-binding Rossmann-fold superfamily protein] -0.194 -0.022
167 259252_at AT3G07610 IBM1, increase in bonsai methylation 1 -0.192 -0.125
168 252618_at AT3G45140 ATLOX2, ARABIODOPSIS THALIANA LIPOXYGENASE 2, LOX2, lipoxygenase 2 -0.191 -0.047
169 256150_at AT1G55120 AtcwINV3, 6-fructan exohydrolase, ATFRUCT5, beta-fructofuranosidase 5, FRUCT5, beta-fructofuranosidase 5 -0.188 0.224