4.0:Information of module
Inflorescence miR-NGA
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0043414 macromolecule methylation BP 1.187e-21
GO:0032259 methylation BP 3.754e-21
GO:0001510 RNA methylation BP 3.375e-16
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019684 photosynthesis, light reaction BP 2.609e-24
GO:0015979 photosynthesis BP 7.453e-24
GO:0019637 organophosphate metabolic process BP 3.172e-23
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Inflorescence miR-NGA		 Log2 signal ratio
bri1-116
1 246437_at AT5G17540 [HXXXD-type acyl-transferase family protein] 0.634 0.014
2 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.444 0.311
3 254037_at AT4G25760 ATGDU2, glutamine dumper 2, GDU2, glutamine dumper 2 0.376 0.027
4 248867_at AT5G46830 ATNIG1, NACL-INDUCIBLE GENE 1, NIG1, NACL-inducible gene 1 0.368 0.054
5 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 0.368 0.023
6 251298_at AT3G62040 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.340 -0.168
7 251825_at AT3G55100 ABCG17, ATP-binding cassette G17 0.337 0.070
8 261991_at AT1G33700 [Beta-glucosidase, GBA2 type family protein] 0.303 0.054
9 248772_at AT5G47800 [Phototropic-responsive NPH3 family protein] 0.302 0.030
10 257900_at AT3G28420 [Putative membrane lipoprotein] 0.301 0.077
11 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 0.301 -0.111
12 249850_at AT5G23240 DJC76, DNA J protein C76 0.298 0.017
13 259878_at AT1G76790 IGMT5, indole glucosinolate O-methyltransferase 5 0.278 -0.286
14 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.276 -0.044
15 258267_at AT3G15870 [Fatty acid desaturase family protein] 0.268 0.069
16 249955_at AT5G18840 [Major facilitator superfamily protein] 0.267 0.100
17 259793_at AT1G64380 [Integrase-type DNA-binding superfamily protein] 0.266 -0.139
18 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D 0.265 0.025
19 254907_at AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] 0.260 -0.507
20 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 0.257 -0.287
21 257570_at AT3G13662 [Disease resistance-responsive (dirigent-like protein) family protein] 0.256 0.063
22 255578_at AT4G01450 UMAMIT30, Usually multiple acids move in and out Transporters 30 0.247 -0.061
23 263549_at AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 0.238 0.015
24 257115_at AT3G20150 [Kinesin motor family protein] 0.237 0.042
25 267571_at AT2G30650 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] 0.234 -0.020
26 247288_at AT5G64330 JK218, NPH3, NON-PHOTOTROPIC HYPOCOTYL 3, RPT3, ROOT PHOTOTROPISM 3 0.231 -0.078
27 264363_at AT1G03170 FAF2, FANTASTIC FOUR 2, FTM5, FLORAL TRANSITION AT THE MERISTEM5 0.231 -0.035
28 259409_at AT1G13330 AHP2, Arabidopsis Hop2 homolog 0.229 0.008
29 251964_at AT3G53370 [S1FA-like DNA-binding protein] 0.228 -0.012
30 260263_at AT1G68480 JAG, JAGGED 0.224 0.145
31 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] 0.223 -0.374
32 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.222 0.079
33 245244_at AT1G44350 ILL6, IAA-leucine resistant (ILR)-like gene 6 0.220 -0.103
34 259609_at AT1G52410 AtTSA1, TSA1, TSK-associating protein 1 0.211 0.005
35 252944_at AT4G39320 [microtubule-associated protein-related] 0.211 -0.131
36 260059_at AT1G78090 ATTPPB, Arabidopsis thaliana trehalose-6-phosphate phosphatase B, TPPB, trehalose-6-phosphate phosphatase B 0.207 -0.176
37 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 0.207 0.130
38 245204_at AT5G12270 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.206 -0.020
39 264071_at AT2G27920 SCPL51, serine carboxypeptidase-like 51 0.205 -0.266
40 248770_at AT5G47740 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.204 0.026
41 254488_at AT4G20790 [Leucine-rich repeat protein kinase family protein] 0.200 0.031
42 258562_at AT3G05980 unknown 0.198 -0.016
43 251555_at AT3G58780 AGL1, AGAMOUS-like 1, SHP1, SHATTERPROOF 1 0.194 -0.028
44 250504_at AT5G09840 [Putative endonuclease or glycosyl hydrolase] 0.188 0.030
45 245029_at AT2G26580 YAB5, YABBY5 0.184 0.185
46 267298_at AT2G23760 BLH4, BEL1-like homeodomain 4, SAW2, SAWTOOTH 2 0.180 0.203
47 258741_at AT3G05790 LON4, lon protease 4 0.178 -0.020
48 266139_at AT2G28085 SAUR42, SMALL AUXIN UPREGULATED RNA 42 0.178 -0.002
49 254022_at AT4G25750 ABCG4, ATP-binding cassette G4 0.177 0.117
50 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.176 0.052
51 248280_at AT5G52950 unknown 0.175 0.085
52 249495_at AT5G39100 GLP6, germin-like protein 6 0.171 -0.013
53 246487_at AT5G16030 unknown 0.169 0.194
54 247068_at AT5G66800 unknown 0.166 -0.032
55 252872_at AT4G40010 SNRK2-7, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-7, SNRK2.7, SNF1-related protein kinase 2.7, SRK2F 0.166 -0.261
56 245108_at AT2G41510 ATCKX1, CYTOKININ OXIDASE/DEHYDROGENASE 1, CKX1, cytokinin oxidase/dehydrogenase 1 0.159 0.125
57 256652_at AT3G18850 LPAT5, lysophosphatidyl acyltransferase 5 0.158 0.102
58 257376_at AT2G32350 [Ubiquitin-like superfamily protein] 0.157 -0.008
59 261636_at AT1G50110 [D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein] 0.155 -0.066
60 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.154 -0.028
61 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 0.150 0.150
62 248395_at AT5G52120 AtPP2-A14, phloem protein 2-A14, PP2-A14, phloem protein 2-A14 0.149 -0.399
63 262905_at AT1G59730 ATH7, thioredoxin H-type 7, TH7, thioredoxin H-type 7 0.148 0.005
64 259014_at AT3G07320 [O-Glycosyl hydrolases family 17 protein] 0.146 -0.062
65 267402_at AT2G26180 IQD6, IQ-domain 6 0.142 -0.097
66 263441_at AT2G28620 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.141 -0.096
67 260618_at AT1G53230 TCP3, TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 0.140 0.148
68 259640_at AT1G52400 ATBG1, A. THALIANA BETA-GLUCOSIDASE 1, BGL1, BETA-GLUCOSIDASE HOMOLOG 1, BGLU18, beta glucosidase 18 0.140 0.788
69 250201_at AT5G14230 unknown 0.139 0.253
70 256603_at AT3G28270 unknown -0.952 0.095
71 264636_at AT1G65490 unknown -0.815 0.172
72 249774_at AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 -0.697 -0.070
73 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.645 0.018
74 264774_at AT1G22890 unknown -0.599 0.187
75 267459_at AT2G33850 unknown -0.579 0.138
76 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 -0.535 -0.071
77 256096_at AT1G13650 unknown -0.531 0.029
78 259786_at AT1G29660 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.524 -0.280
79 246700_at AT5G28030 DES1, L-cysteine desulfhydrase 1 -0.500 0.109
80 261979_at AT1G37130 ATNR2, ARABIDOPSIS NITRATE REDUCTASE 2, B29, CHL3, CHLORATE RESISTANT 3, NIA2, nitrate reductase 2, NIA2-1, NR, NITRATE REDUCTASE, NR2, NITRATE REDUCTASE 2 -0.493 0.167
81 253048_at AT4G37560 [Acetamidase/Formamidase family protein] -0.484 0.163
82 250099_at AT5G17300 RVE1, REVEILLE 1 -0.471 0.034
83 246596_at AT5G14740 BETA CA2, BETA CARBONIC ANHYDRASE 2, CA18, CARBONIC ANHYDRASE 18, CA2, carbonic anhydrase 2 -0.457 0.036
84 255626_at AT4G00780 [TRAF-like family protein] -0.437 0.144
85 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 -0.417 0.050
86 248759_at AT5G47610 [RING/U-box superfamily protein] -0.414 0.233
87 260774_at AT1G78290 SNRK2-8, SNF1-RELATED PROTEIN KINASE 2-8, SNRK2.8, SNF1-RELATED PROTEIN KINASE 2.8, SRK2C, SNF1-RELATED PROTEIN KINASE 2C -0.410 -0.207
88 256168_at AT1G51805 [Leucine-rich repeat protein kinase family protein] -0.405 0.038
89 267169_at AT2G37540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.404 -0.084
90 253806_at AT4G28270 ATRMA2, RMA2, RING membrane-anchor 2 -0.387 0.062
91 253052_at AT4G37310 CYP81H1, cytochrome P450, family 81, subfamily H, polypeptide 1 -0.378 0.164
92 262826_at AT1G13080 CYP71B2, cytochrome P450, family 71, subfamily B, polypeptide 2 -0.373 0.052
93 264899_at AT1G23130 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.360 0.957
94 249515_at AT5G38530 TSBtype2, tryptophan synthase beta type 2 -0.359 -0.134
95 253305_at AT4G33666 unknown -0.356 -0.290
96 255582_at AT4G01500 NGA4, NGATHA4 -0.352 0.103
97 256891_at AT3G19030 unknown -0.352 0.137
98 263668_at AT1G04350 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.347 0.004
99 255579_at AT4G01460 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.346 0.205
100 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 -0.345 0.022
101 253814_at AT4G28290 unknown -0.339 0.012
102 261568_at AT1G01030 NGA3, NGATHA3 -0.336 0.041
103 264195_at AT1G22690 [Gibberellin-regulated family protein] -0.335 1.019
104 249010_at AT5G44580 unknown -0.329 0.052
105 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 -0.321 -0.012
106 259996_at AT1G67910 unknown -0.318 0.124
107 248756_at AT5G47560 ATSDAT, ATTDT, TONOPLAST DICARBOXYLATE TRANSPORTER, TDT, tonoplast dicarboxylate transporter -0.318 -0.079
108 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.316 -0.115
109 257017_at AT3G19620 [Glycosyl hydrolase family protein] -0.316 0.111
110 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 -0.314 0.243
111 246998_at AT5G67370 CGLD27, CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27 -0.314 -0.112
112 267063_at AT2G41120 unknown -0.305 0.016
113 260357_at AT1G69260 AFP1, ABI five binding protein -0.297 0.056
114 265475_at AT2G15620 ATHNIR, ARABIDOPSIS THALIANA NITRITE REDUCTASE, NIR, NITRITE REDUCTASE, NIR1, nitrite reductase 1 -0.297 0.002
115 253943_at AT4G27030 FAD4, FATTY ACID DESATURASE 4, FADA, fatty acid desaturase A -0.296 0.166
116 246195_at AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 -0.295 -0.079
117 258038_at AT3G21260 GLTP3, GLYCOLIPID TRANSFER PROTEIN 3 -0.293 0.083
118 246996_at AT5G67420 ASL39, ASYMMETRIC LEAVES2-LIKE 39, LBD37, LOB domain-containing protein 37 -0.291 0.165
119 247880_at AT5G57780 P1R1, P1R1 -0.290 0.205
120 260007_at AT1G67870 [glycine-rich protein] -0.289 -0.058
121 254564_at AT4G19170 CCD4, carotenoid cleavage dioxygenase 4, NCED4, nine-cis-epoxycarotenoid dioxygenase 4 -0.286 0.238
122 251218_at AT3G62410 CP12, CP12 DOMAIN-CONTAINING PROTEIN 1, CP12-2, CP12 domain-containing protein 2 -0.283 0.329
123 261410_at AT1G07610 MT1C, metallothionein 1C -0.281 -0.031
124 265939_at AT2G19650 [Cysteine/Histidine-rich C1 domain family protein] -0.280 0.130
125 259927_at AT1G75100 JAC1, J-domain protein required for chloroplast accumulation response 1 -0.280 0.135
126 261068_at AT1G07450 [NAD(P)-binding Rossmann-fold superfamily protein] -0.277 0.019
127 267262_at AT2G22990 SCPL8, SERINE CARBOXYPEPTIDASE-LIKE 8, SNG1, sinapoylglucose 1 -0.277 0.104
128 250915_at AT5G03790 ATHB51, HB51, homeobox 51, LMI1, LATE MERISTEM IDENTITY1 -0.277 0.006
129 251342_at AT3G60690 SAUR59, SMALL AUXIN UPREGULATED RNA 59 -0.276 0.023
130 249327_at AT5G40890 ATCLC-A, chloride channel A, ATCLCA, CLC-A, chloride channel A, CLC-A, CHLORIDE CHANNEL-A, CLCA, CHLORIDE CHANNEL A -0.274 -0.137
131 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 -0.274 -0.142
132 246241_at AT4G37050 AtPLAIVC, phospholipase A IVC, PLA V, PLAIII{beta}, patatin-related phospholipase III beta, PLP4, PATATIN-like protein 4 -0.272 -0.136
133 258647_at AT3G07870 [F-box and associated interaction domains-containing protein] -0.271 -0.020
134 247921_at AT5G57660 ATCOL5, BBX6, B-box domain protein 6, COL5, CONSTANS-like 5 -0.271 0.072
135 260266_at AT1G68520 BBX14, B-box domain protein 14 -0.270 0.502
136 257947_at AT3G21720 ICL, isocitrate lyase -0.266 -0.094
137 266265_at AT2G29340 [NAD-dependent epimerase/dehydratase family protein] -0.263 0.234