4.0:Information of module
per1 in control medium
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009313 oligosaccharide catabolic process BP 1.191e-03
GO:0010026 trichome differentiation BP 1.913e-03
GO:0048364 root development BP 3.145e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010218 response to far red light BP 7.350e-05
GO:0008361 regulation of cell size BP 1.199e-04
GO:0010114 response to red light BP 1.464e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
per1 in control medium		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 250135_at AT5G15360 unknown 0.708 -0.502
2 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.387 -0.332
3 260522_x_at AT2G41730 unknown 0.328 -0.810
4 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 0.266 -0.915
5 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 0.247 0.605
6 267573_at AT2G30670 [NAD(P)-binding Rossmann-fold superfamily protein] 0.243 -0.831
7 252851_at AT4G40080 [ENTH/ANTH/VHS superfamily protein] 0.228 0.562
8 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 0.212 0.374
9 250798_at AT5G05340 PRX52, peroxidase 52 0.202 0.461
10 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE 0.198 0.586
11 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.191 -0.679
12 246386_at AT1G77410 BGAL16, beta-galactosidase 16 0.181 -0.383
13 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 0.171 -0.320
14 256780_at AT3G13640 ABCE1, ATP-binding cassette E1, ATRLI1, RNAse l inhibitor protein 1, RLI1, RNAse l inhibitor protein 1 0.166 -0.477
15 245258_at AT4G15340 04C11, ATPEN1, pentacyclic triterpene synthase 1, PEN1, pentacyclic triterpene synthase 1 0.165 -1.145
16 256531_at AT1G33320 [Pyridoxal phosphate (PLP)-dependent transferases superfamily protein] 0.153 -1.218
17 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 0.152 0.416
18 247170_at AT5G65530 [Protein kinase superfamily protein] 0.151 0.415
19 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.148 -0.221
20 247867_at AT5G57630 CIPK21, CBL-interacting protein kinase 21, SnRK3.4, SNF1-RELATED PROTEIN KINASE 3.4 0.147 -0.597
21 246999_at AT5G67440 MEL2, MAB4/ENP/NPY1-LIKE 2, NPY3, NAKED PINS IN YUC MUTANTS 3 0.146 -0.204
22 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 0.144 -0.321
23 247345_at AT5G63760 ARI15, ARIADNE 15, ATARI15, ARABIDOPSIS ARIADNE 15 0.144 -0.268
24 250920_at AT5G03390 unknown 0.142 -0.447
25 254728_at AT4G13690 unknown 0.140 -0.568
26 264085_at AT2G31250 HEMA3 0.140 -0.848
27 247682_at AT5G59650 [Leucine-rich repeat protein kinase family protein] 0.139 -0.970
28 249972_at AT5G19040 ATIPT5, Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, IPT5, isopentenyltransferase 5 0.137 -0.601
29 262795_at AT1G13130 [Cellulase (glycosyl hydrolase family 5) protein] 0.133 -0.340
30 250941_at AT5G03320 [Protein kinase superfamily protein] 0.133 1.153
31 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.130 -0.720
32 260303_at AT1G70520 ASG6, ALTERED SEED GERMINATION 6, CRK2, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 0.129 0.640
33 248814_at AT5G46910 [Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein] 0.123 0.049
34 247393_at AT5G63130 [Octicosapeptide/Phox/Bem1p family protein] 0.122 -0.551
35 256574_at AT3G14780 unknown 0.121 -1.356
36 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.121 -0.206
37 261894_at AT1G80900 ATMGT1, MAGNESIUM TRANSPORTER 1, MGT1, magnesium transporter 1, MRS2-10 0.121 -0.075
38 264040_at AT2G03730 ACR5, ACT domain repeat 5 0.119 0.915
39 245619_at AT4G13990 [Exostosin family protein] 0.117 0.321
40 254404_at AT4G21340 B70 0.116 -0.621
41 263658_at AT1G04490 unknown 0.115 -0.993
42 260150_at AT1G52820 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.497 -0.764
43 264672_at AT1G09750 [Eukaryotic aspartyl protease family protein] -0.355 0.588
44 247320_at AT5G64040 PSAN -0.295 0.922
45 264023_at AT2G21195 unknown -0.286 0.210
46 249557_at AT5G38280 PR5K, PR5-like receptor kinase -0.260 -0.121
47 250257_at AT5G13770 [Pentatricopeptide repeat (PPR-like) superfamily protein] -0.250 0.122
48 249524_at AT5G38520 [alpha/beta-Hydrolases superfamily protein] -0.248 0.657
49 246330_at AT3G43600 AAO2, aldehyde oxidase 2, AO3, aldehyde oxidase 3, AOgamma, Aldehyde oxidase gamma, atAO-2, Arabidopsis thaliana aldehyde oxidase 2, AtAO3, Arabidopsis thaliana aldehyde oxidase 3 -0.245 0.893
50 257054_at AT3G15353 ATMT3, MT3, metallothionein 3 -0.236 0.325
51 264545_at AT1G55670 PSAG, photosystem I subunit G -0.228 0.684
52 251617_at AT3G58000 [VQ motif-containing protein] -0.221 -0.795
53 245774_at AT1G30210 ATTCP24, TCP24, TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 -0.219 -0.108
54 254836_at AT4G12330 CYP706A7, cytochrome P450, family 706, subfamily A, polypeptide 7 -0.219 0.034
55 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.216 0.510
56 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 -0.215 -0.049
57 245106_at AT2G41650 unknown -0.206 0.294
58 252448_at AT3G47050 [Glycosyl hydrolase family protein] -0.194 -0.902
59 259737_at AT1G64400 LACS3, long-chain acyl-CoA synthetase 3 -0.187 0.131
60 259996_at AT1G67910 unknown -0.186 0.185
61 264282_at AT1G61840 [Cysteine/Histidine-rich C1 domain family protein] -0.177 -0.195
62 246906_at AT5G25475 [AP2/B3-like transcriptional factor family protein] -0.173 0.200
63 261530_at AT1G63460 ATGPX8, GPX8, glutathione peroxidase 8 -0.173 0.114
64 264301_at AT1G78780 [pathogenesis-related family protein] -0.173 -0.313
65 251031_at AT5G02120 OHP, one helix protein, PDE335, PIGMENT DEFECTIVE 335 -0.172 0.700
66 254286_at AT4G22950 AGL19, AGAMOUS-like 19, GL19 -0.168 -1.277
67 262970_at AT1G75690 LQY1, LOW QUANTUM YIELD OF PHOTOSYSTEM II 1 -0.166 0.550
68 255527_at AT4G02360 unknown -0.160 -0.569
69 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -0.160 -0.900
70 245300_at AT4G16350 CBL6, calcineurin B-like protein 6, SCABP2, SOS3-LIKE CALCIUM BINDING PROTEIN 2 -0.157 -0.898
71 249033_at AT5G44920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.154 -0.570
72 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.148 -0.468
73 250180_at AT5G14450 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.146 1.802
74 246235_at AT4G36830 HOS3-1 -0.145 0.172
75 245730_at AT1G73470 unknown -0.144 0.163
76 263918_at AT2G36590 ATPROT3, PROLINE TRANSPORTER 3, ProT3, proline transporter 3 -0.144 0.491
77 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] -0.144 -0.310
78 258738_at AT3G05750 TRM6, TON1 Recruiting Motif 6 -0.144 -0.873
79 248770_at AT5G47740 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.142 -0.612
80 246891_at AT5G25490 [Ran BP2/NZF zinc finger-like superfamily protein] -0.141 0.842
81 253566_at AT4G31210 [DNA topoisomerase, type IA, core] -0.140 0.352