4.0:Information of module
per1 in control medium
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009313 oligosaccharide catabolic process BP 1.191e-03
GO:0010026 trichome differentiation BP 1.913e-03
GO:0048364 root development BP 3.145e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010218 response to far red light BP 7.350e-05
GO:0008361 regulation of cell size BP 1.199e-04
GO:0010114 response to red light BP 1.464e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
per1 in control medium		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 250135_at AT5G15360 unknown 0.708 -0.083
2 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.387 0.257
3 260522_x_at AT2G41730 unknown 0.328 0.225
4 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 0.266 0.081
5 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 0.247 -0.209
6 267573_at AT2G30670 [NAD(P)-binding Rossmann-fold superfamily protein] 0.243 -0.170
7 252851_at AT4G40080 [ENTH/ANTH/VHS superfamily protein] 0.228 -0.026
8 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 0.212 0.179
9 250798_at AT5G05340 PRX52, peroxidase 52 0.202 0.029
10 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE 0.198 0.039
11 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.191 -0.100
12 246386_at AT1G77410 BGAL16, beta-galactosidase 16 0.181 -0.004
13 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 0.171 0.101
14 256780_at AT3G13640 ABCE1, ATP-binding cassette E1, ATRLI1, RNAse l inhibitor protein 1, RLI1, RNAse l inhibitor protein 1 0.166 -0.021
15 245258_at AT4G15340 04C11, ATPEN1, pentacyclic triterpene synthase 1, PEN1, pentacyclic triterpene synthase 1 0.165 -0.132
16 256531_at AT1G33320 [Pyridoxal phosphate (PLP)-dependent transferases superfamily protein] 0.153 -0.198
17 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 0.152 -0.026
18 247170_at AT5G65530 [Protein kinase superfamily protein] 0.151 0.005
19 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.148 -0.063
20 247867_at AT5G57630 CIPK21, CBL-interacting protein kinase 21, SnRK3.4, SNF1-RELATED PROTEIN KINASE 3.4 0.147 -0.063
21 246999_at AT5G67440 MEL2, MAB4/ENP/NPY1-LIKE 2, NPY3, NAKED PINS IN YUC MUTANTS 3 0.146 -0.124
22 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 0.144 0.053
23 247345_at AT5G63760 ARI15, ARIADNE 15, ATARI15, ARABIDOPSIS ARIADNE 15 0.144 -0.085
24 250920_at AT5G03390 unknown 0.142 0.285
25 254728_at AT4G13690 unknown 0.140 0.180
26 264085_at AT2G31250 HEMA3 0.140 0.161
27 247682_at AT5G59650 [Leucine-rich repeat protein kinase family protein] 0.139 0.109
28 249972_at AT5G19040 ATIPT5, Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, IPT5, isopentenyltransferase 5 0.137 0.134
29 262795_at AT1G13130 [Cellulase (glycosyl hydrolase family 5) protein] 0.133 -0.022
30 250941_at AT5G03320 [Protein kinase superfamily protein] 0.133 0.096
31 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.130 -0.018
32 260303_at AT1G70520 ASG6, ALTERED SEED GERMINATION 6, CRK2, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 0.129 -0.100
33 248814_at AT5G46910 [Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein] 0.123 0.150
34 247393_at AT5G63130 [Octicosapeptide/Phox/Bem1p family protein] 0.122 0.114
35 256574_at AT3G14780 unknown 0.121 -0.109
36 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.121 0.063
37 261894_at AT1G80900 ATMGT1, MAGNESIUM TRANSPORTER 1, MGT1, magnesium transporter 1, MRS2-10 0.121 -0.027
38 264040_at AT2G03730 ACR5, ACT domain repeat 5 0.119 0.021
39 245619_at AT4G13990 [Exostosin family protein] 0.117 -0.040
40 254404_at AT4G21340 B70 0.116 -0.102
41 263658_at AT1G04490 unknown 0.115 -0.013
42 260150_at AT1G52820 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.497 -0.002
43 264672_at AT1G09750 [Eukaryotic aspartyl protease family protein] -0.355 0.168
44 247320_at AT5G64040 PSAN -0.295 -0.118
45 264023_at AT2G21195 unknown -0.286 -0.026
46 249557_at AT5G38280 PR5K, PR5-like receptor kinase -0.260 0.063
47 250257_at AT5G13770 [Pentatricopeptide repeat (PPR-like) superfamily protein] -0.250 -0.021
48 249524_at AT5G38520 [alpha/beta-Hydrolases superfamily protein] -0.248 -0.078
49 246330_at AT3G43600 AAO2, aldehyde oxidase 2, AO3, aldehyde oxidase 3, AOgamma, Aldehyde oxidase gamma, atAO-2, Arabidopsis thaliana aldehyde oxidase 2, AtAO3, Arabidopsis thaliana aldehyde oxidase 3 -0.245 0.105
50 257054_at AT3G15353 ATMT3, MT3, metallothionein 3 -0.236 0.061
51 264545_at AT1G55670 PSAG, photosystem I subunit G -0.228 0.094
52 251617_at AT3G58000 [VQ motif-containing protein] -0.221 -0.083
53 245774_at AT1G30210 ATTCP24, TCP24, TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 -0.219 0.004
54 254836_at AT4G12330 CYP706A7, cytochrome P450, family 706, subfamily A, polypeptide 7 -0.219 -0.117
55 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.216 0.041
56 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 -0.215 -0.031
57 245106_at AT2G41650 unknown -0.206 -0.133
58 252448_at AT3G47050 [Glycosyl hydrolase family protein] -0.194 -0.107
59 259737_at AT1G64400 LACS3, long-chain acyl-CoA synthetase 3 -0.187 0.006
60 259996_at AT1G67910 unknown -0.186 -0.011
61 264282_at AT1G61840 [Cysteine/Histidine-rich C1 domain family protein] -0.177 -0.086
62 246906_at AT5G25475 [AP2/B3-like transcriptional factor family protein] -0.173 0.088
63 261530_at AT1G63460 ATGPX8, GPX8, glutathione peroxidase 8 -0.173 -0.113
64 264301_at AT1G78780 [pathogenesis-related family protein] -0.173 -0.050
65 251031_at AT5G02120 OHP, one helix protein, PDE335, PIGMENT DEFECTIVE 335 -0.172 0.021
66 254286_at AT4G22950 AGL19, AGAMOUS-like 19, GL19 -0.168 0.060
67 262970_at AT1G75690 LQY1, LOW QUANTUM YIELD OF PHOTOSYSTEM II 1 -0.166 0.007
68 255527_at AT4G02360 unknown -0.160 0.179
69 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -0.160 -0.209
70 245300_at AT4G16350 CBL6, calcineurin B-like protein 6, SCABP2, SOS3-LIKE CALCIUM BINDING PROTEIN 2 -0.157 0.020
71 249033_at AT5G44920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.154 -0.109
72 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.148 -0.074
73 250180_at AT5G14450 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.146 0.129
74 246235_at AT4G36830 HOS3-1 -0.145 0.005
75 245730_at AT1G73470 unknown -0.144 0.181
76 263918_at AT2G36590 ATPROT3, PROLINE TRANSPORTER 3, ProT3, proline transporter 3 -0.144 -0.072
77 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] -0.144 -0.036
78 258738_at AT3G05750 TRM6, TON1 Recruiting Motif 6 -0.144 -0.079
79 248770_at AT5G47740 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.142 0.191
80 246891_at AT5G25490 [Ran BP2/NZF zinc finger-like superfamily protein] -0.141 0.035
81 253566_at AT4G31210 [DNA topoisomerase, type IA, core] -0.140 0.239