4.0:Information of module
Col whole leaf 5 dpi
In comparison with Shoot submergence 7h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 1.594e-29
GO:0045087 innate immune response BP 7.220e-29
GO:0006955 immune response BP 1.056e-28
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 1.613e-16
GO:0006081 cellular aldehyde metabolic process BP 1.472e-15
GO:0044281 small molecule metabolic process BP 9.208e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col whole leaf 5 dpi		 Log2 signal ratio
Shoot submergence 7h
1 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 0.876 0.312
2 259559_at AT1G21240 WAK3, wall associated kinase 3 0.799 0.012
3 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.786 0.458
4 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase 0.695 1.051
5 245076_at AT2G23170 GH3.3 0.651 0.151
6 247293_at AT5G64510 TIN1, tunicamycin induced 1 0.646 -0.125
7 255340_at AT4G04490 CRK36, cysteine-rich RLK (RECEPTOR-like protein kinase) 36 0.614 0.302
8 257100_at AT3G25010 AtRLP41, receptor like protein 41, RLP41, receptor like protein 41 0.594 -0.007
9 253687_at AT4G29520 [LOCATED IN: endoplasmic reticulum, plasma membrane] 0.590 -0.330
10 261394_at AT1G79680 ATWAKL10, WAKL10, WALL ASSOCIATED KINASE (WAK)-LIKE 10 0.587 0.159
11 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 0.571 0.343
12 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.564 0.192
13 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.554 0.563
14 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.546 0.437
15 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.538 1.273
16 254571_at AT4G19370 unknown 0.518 0.434
17 247314_at AT5G64000 ATSAL2, SAL2 0.518 0.293
18 255341_at AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 0.497 0.057
19 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 0.496 0.086
20 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.495 0.267
21 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 0.492 0.972
22 261216_at AT1G33030 [O-methyltransferase family protein] 0.486 0.651
23 259489_at AT1G15790 unknown 0.485 0.573
24 261167_at AT1G04980 ATPDI10, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, ATPDIL2-2, PDI-like 2-2, PDI10, PROTEIN DISULFIDE ISOMERASE, PDIL2-2, PDI-like 2-2 0.465 -0.189
25 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] 0.464 -0.210
26 267300_at AT2G30140 UGT87A2, UDP-glucosyl transferase 87A2 0.446 0.365
27 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 0.441 0.184
28 255912_at AT1G66960 LUP5 0.423 0.048
29 260239_at AT1G74360 [Leucine-rich repeat protein kinase family protein] 0.412 0.103
30 251884_at AT3G54150 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.409 0.602
31 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 0.406 -0.360
32 253181_at AT4G35180 LHT7, LYS/HIS transporter 7 0.403 0.049
33 267546_at AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 0.400 0.088
34 267413_at AT2G34960 CAT5, cationic amino acid transporter 5 0.396 0.003
35 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.382 0.005
36 257154_at AT3G27210 unknown 0.378 0.183
37 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 0.376 0.037
38 248060_at AT5G55560 [Protein kinase superfamily protein] 0.376 0.459
39 267436_at AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 0.370 0.424
40 258385_at AT3G15510 ANAC056, Arabidopsis NAC domain containing protein 56, ATNAC2, NAC domain containing protein 2, NAC2, NAC domain containing protein 2, NARS1, NAC-REGULATED SEED MORPHOLOGY 1 0.369 0.055
41 254543_at AT4G19810 ChiC, class V chitinase 0.366 0.331
42 265161_at AT1G30900 BP80-3;3, binding protein of 80 kDa 3;3, VSR3;3, VACUOLAR SORTING RECEPTOR 3;3, VSR6, VACUOLAR SORTING RECEPTOR 6 0.360 -0.193
43 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 0.347 -0.042
44 252060_at AT3G52430 ATPAD4, ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, PAD4, PHYTOALEXIN DEFICIENT 4 0.339 0.119
45 246988_at AT5G67340 [ARM repeat superfamily protein] 0.335 0.156
46 252825_at AT4G39890 AtRABH1c, RAB GTPase homolog H1C, RABH1c, RAB GTPase homolog H1C 0.331 0.340
47 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.325 -0.377
48 248333_at AT5G52390 [PAR1 protein] 0.322 -0.058
49 265189_at AT1G23840 unknown 0.321 0.065
50 257625_at AT3G26230 CYP71B24, cytochrome P450, family 71, subfamily B, polypeptide 24 0.317 0.141
51 251673_at AT3G57240 AtBG3, BG3, beta-1,3-glucanase 3 0.316 0.023
52 261023_at AT1G12200 FMO, flavin monooxygenase 0.311 -0.100
53 265356_at AT2G16595 [Translocon-associated protein (TRAP), alpha subunit] 0.309 0.488
54 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.307 0.188
55 255794_at AT2G33480 ANAC041, NAC domain containing protein 41, NAC041, NAC domain containing protein 41 0.304 0.053
56 250267_at AT5G12930 unknown 0.303 0.443
57 266017_at AT2G18690 unknown 0.303 0.620
58 256697_at AT3G20660 AtOCT4, organic cation/carnitine transporter4, OCT4, organic cation/carnitine transporter4 0.303 0.775
59 249309_at AT5G41410 BEL1, BELL 1 0.296 -0.325
60 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 0.295 0.163
61 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 0.288 0.626
62 259852_at AT1G72280 AERO1, endoplasmic reticulum oxidoreductins 1, ERO1, endoplasmic reticulum oxidoreductins 1 0.285 -0.250
63 250400_at AT5G10740 [Protein phosphatase 2C family protein] 0.285 0.568
64 261456_at AT1G21050 unknown 0.282 0.269
65 266167_at AT2G38860 DJ-1e, DJ1E, YLS5 0.279 -0.121
66 262378_at AT1G72830 ATHAP2C, HAP2C, NF-YA3, nuclear factor Y, subunit A3 0.277 0.253
67 257535_at AT3G09490 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.275 0.194
68 251342_at AT3G60690 SAUR59, SMALL AUXIN UPREGULATED RNA 59 0.275 0.238
69 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.274 0.363
70 266992_at AT2G39200 ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, MILDEW RESISTANCE LOCUS O 12 0.273 0.503
71 259598_at AT1G27980 ATDPL1, DPL1, dihydrosphingosine phosphate lyase 0.273 0.610
72 265620_at AT2G27310 [F-box family protein] 0.271 0.004
73 253519_at AT4G31240 AtNRX2, NRX2, nucleoredoxin 2 0.265 0.617
74 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.260 -0.267
75 255595_at AT4G01700 [Chitinase family protein] 0.256 0.155
76 246098_at AT5G20400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.254 0.622
77 245431_at AT4G17080 [Histone H3 K4-specific methyltransferase SET7/9 family protein] 0.254 0.432
78 263605_at AT2G16485 NERD, Needed for RDR2-independent DNA methylation 0.252 -0.217
79 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.251 0.525
80 263183_at AT1G05570 ATGSL06, ATGSL6, CALS1, callose synthase 1, GSL06, GSL6, GLUCAN SYNTHASE-LIKE 6 0.251 0.143
81 245293_at AT4G16660 [heat shock protein 70 (Hsp 70) family protein] 0.244 -0.215
82 260201_at AT1G67600 [Acid phosphatase/vanadium-dependent haloperoxidase-related protein] 0.239 0.142
83 262177_at AT1G74710 ATICS1, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ICS1, ISOCHORISMATE SYNTHASE 1, SID2, SALICYLIC ACID INDUCTION DEFICIENT 2 0.239 -0.158
84 246004_at AT5G20630 ATGER3, ARABIDOPSIS THALIANA GERMIN 3, GER3, germin 3, GLP3, GERMIN-LIKE PROTEIN 3, GLP3A, GLP3B -0.923 -0.232
85 260982_at AT1G53520 AtFAP3, FAP3, fatty-acid-binding protein 3 -0.686 -0.194
86 245422_at AT4G17470 [alpha/beta-Hydrolases superfamily protein] -0.682 -0.425
87 245980_at AT5G13140 [Pollen Ole e 1 allergen and extensin family protein] -0.554 -0.229
88 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 -0.507 -0.520
89 252997_at AT4G38400 ATEXLA2, expansin-like A2, ATEXPL2, ATHEXP BETA 2.2, EXLA2, expansin-like A2, EXPL2, EXPANSIN L2 -0.499 -0.061
90 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 -0.491 -0.237
91 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 -0.461 -0.357
92 263480_at AT2G04032 ZIP7, zinc transporter 7 precursor -0.459 -0.677
93 245196_at AT1G67750 [Pectate lyase family protein] -0.447 -0.364
94 260028_at AT1G29980 unknown -0.445 -0.362
95 262830_at AT1G14700 ATPAP3, PAP3, purple acid phosphatase 3 -0.441 -0.603
96 255549_at AT4G01950 ATGPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3, GPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3 -0.429 -0.731
97 266715_at AT2G46780 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.428 0.048
98 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 -0.424 -0.188
99 253191_at AT4G35350 XCP1, xylem cysteine peptidase 1 -0.419 -0.727
100 266447_at AT2G43290 MSS3, multicopy suppressors of snf4 deficiency in yeast 3 -0.411 -0.706
101 246200_at AT4G37240 unknown -0.404 0.039
102 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] -0.402 -0.671
103 246993_at AT5G67450 AZF1, zinc-finger protein 1, ZF1, zinc-finger protein 1 -0.401 0.180
104 263628_at AT2G04780 FLA7, FASCICLIN-like arabinoogalactan 7 -0.396 -0.297
105 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 -0.392 -0.737
106 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] -0.388 -0.835
107 262354_at AT1G64200 VHA-E3, vacuolar H+-ATPase subunit E isoform 3 -0.388 -0.238
108 253643_at AT4G29780 unknown -0.381 -0.330
109 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 -0.361 -0.498
110 259185_at AT3G01550 ATPPT2, PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2, PPT2, phosphoenolpyruvate (pep)/phosphate translocator 2 -0.356 -1.389
111 251955_at AT3G53680 [Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain] -0.353 -0.143
112 252377_at AT3G47960 AtNPF2.10, GTR1, GLUCOSINOLATE TRANSPORTER-1, NPF2.10, NRT1/ PTR family 2.10 -0.351 -0.960
113 250006_at AT5G18660 PCB2, PALE-GREEN AND CHLOROPHYLL B REDUCED 2 -0.350 -0.963
114 266418_at AT2G38750 ANNAT4, annexin 4, AtANN4 -0.345 -0.605
115 248975_at AT5G45040 CYTC6A, cytochrome c6A -0.345 0.117
116 252374_at AT3G48100 ARR5, response regulator 5, ATRR2, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, IBC6, INDUCED BY CYTOKININ 6, RR5, response regulator 5 -0.342 -0.116
117 252365_at AT3G48350 CEP3, cysteine endopeptidase 3 -0.340 -0.433
118 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 -0.340 -0.612
119 263726_at AT2G13610 ABCG5, ATP-binding cassette G5 -0.335 0.077
120 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 -0.333 1.242
121 247100_at AT5G66520 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.329 -0.118
122 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.326 -0.932
123 261175_at AT1G04800 [glycine-rich protein] -0.321 -0.107
124 252943_at AT4G39330 ATCAD9, CAD9, cinnamyl alcohol dehydrogenase 9 -0.320 -0.753
125 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 -0.314 -1.014
126 247524_at AT5G61440 ACHT5, atypical CYS HIS rich thioredoxin 5 -0.309 0.661
127 262290_at AT1G70985 [hydroxyproline-rich glycoprotein family protein] -0.309 -0.591
128 252143_at AT3G51150 [ATP binding microtubule motor family protein] -0.306 -0.236
129 251846_at AT3G54560 HTA11, histone H2A 11 -0.303 -0.223
130 252363_at AT3G48460 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.300 -1.180
131 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 -0.299 0.509
132 250661_at AT5G07030 [Eukaryotic aspartyl protease family protein] -0.296 -0.494
133 259979_at AT1G76600 unknown -0.296 0.296
134 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 -0.289 0.519
135 249932_at AT5G22390 unknown -0.289 -0.383
136 253480_at AT4G31840 AtENODL15, ENODL15, early nodulin-like protein 15 -0.287 -0.416
137 262414_at AT1G49430 LACS2, long-chain acyl-CoA synthetase 2, LRD2, LATERAL ROOT DEVELOPMENT 2 -0.287 -0.589
138 264096_at AT1G78995 unknown -0.285 -0.499
139 261801_at AT1G30520 AAE14, acyl-activating enzyme 14 -0.285 -0.225
140 265118_at AT1G62660 [Glycosyl hydrolases family 32 protein] -0.284 0.027
141 261256_at AT1G05760 RTM1, restricted tev movement 1 -0.283 0.213
142 264179_at AT1G02180 [ferredoxin-related] -0.282 -0.322
143 248597_at AT5G49160 DDM2, DECREASED DNA METHYLATION 2, DMT01, DNA METHYLTRANSFERASE 01, DMT1, DNA METHYLTRANSFERASE 1, MET1, methyltransferase 1, MET2, METHYLTRANSFERASE 2, METI, METHYLTRANSFERASE I -0.280 -0.200
144 250820_at AT5G05160 RUL1, REDUCED IN LATERAL GROWTH1 -0.280 -0.087
145 245743_at AT1G51080 unknown -0.278 -0.667
146 259014_at AT3G07320 [O-Glycosyl hydrolases family 17 protein] -0.277 -0.325
147 261570_at AT1G01120 KCS1, 3-ketoacyl-CoA synthase 1 -0.277 -0.913
148 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 -0.274 -0.458
149 267038_at AT2G38480 [Uncharacterised protein family (UPF0497)] -0.272 -0.327
150 261949_at AT1G64670 BDG1, BODYGUARD1, CED1, 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1 -0.272 -0.469
151 253522_at AT4G31290 AtGGCT2;2, GGCT2;2, gamma-glutamyl cyclotransferase 2;2 -0.269 0.251
152 247213_at AT5G64900 ATPEP1, ARABIDOPSIS THALIANA PEPTIDE 1, PEP1, PEPTIDE 1, PROPEP1, precursor of peptide 1 -0.268 -0.275
153 263127_at AT1G78610 MSL6, mechanosensitive channel of small conductance-like 6 -0.266 -0.153
154 265732_at AT2G01300 unknown -0.264 0.191
155 251395_at AT2G45470 AGP8, ARABINOGALACTAN PROTEIN 8, FLA8, FASCICLIN-like arabinogalactan protein 8 -0.263 -0.516
156 247977_at AT5G56850 unknown -0.263 -1.025
157 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] -0.260 -0.332
158 251982_at AT3G53190 [Pectin lyase-like superfamily protein] -0.260 -0.352
159 249061_at AT5G44550 [Uncharacterised protein family (UPF0497)] -0.258 -0.167
160 251714_at AT3G56370 [Leucine-rich repeat protein kinase family protein] -0.258 -0.670
161 248094_at AT5G55220 [trigger factor type chaperone family protein] -0.258 -0.683
162 264315_at AT1G70370 PG2, polygalacturonase 2 -0.255 -0.562
163 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A -0.253 -0.377
164 249278_at AT5G41900 [alpha/beta-Hydrolases superfamily protein] -0.248 -0.722
165 253579_at AT4G30610 BRS1, BRI1 SUPPRESSOR 1, SCPL24, SERINE CARBOXYPEPTIDASE 24 PRECURSOR -0.248 -0.865