4.0:Information of module
Col whole leaf 5 dpi
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 1.594e-29
GO:0045087 innate immune response BP 7.220e-29
GO:0006955 immune response BP 1.056e-28
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 1.613e-16
GO:0006081 cellular aldehyde metabolic process BP 1.472e-15
GO:0044281 small molecule metabolic process BP 9.208e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col whole leaf 5 dpi		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 0.876 0.457
2 259559_at AT1G21240 WAK3, wall associated kinase 3 0.799 0.022
3 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.786 0.125
4 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase 0.695 0.078
5 245076_at AT2G23170 GH3.3 0.651 0.831
6 247293_at AT5G64510 TIN1, tunicamycin induced 1 0.646 0.345
7 255340_at AT4G04490 CRK36, cysteine-rich RLK (RECEPTOR-like protein kinase) 36 0.614 0.541
8 257100_at AT3G25010 AtRLP41, receptor like protein 41, RLP41, receptor like protein 41 0.594 -0.050
9 253687_at AT4G29520 [LOCATED IN: endoplasmic reticulum, plasma membrane] 0.590 0.245
10 261394_at AT1G79680 ATWAKL10, WAKL10, WALL ASSOCIATED KINASE (WAK)-LIKE 10 0.587 0.054
11 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 0.571 0.422
12 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.564 0.507
13 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.554 0.722
14 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.546 0.094
15 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.538 0.671
16 254571_at AT4G19370 unknown 0.518 0.004
17 247314_at AT5G64000 ATSAL2, SAL2 0.518 0.011
18 255341_at AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 0.497 0.085
19 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 0.496 0.215
20 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.495 0.625
21 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 0.492 0.670
22 261216_at AT1G33030 [O-methyltransferase family protein] 0.486 0.613
23 259489_at AT1G15790 unknown 0.485 0.342
24 261167_at AT1G04980 ATPDI10, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, ATPDIL2-2, PDI-like 2-2, PDI10, PROTEIN DISULFIDE ISOMERASE, PDIL2-2, PDI-like 2-2 0.465 0.397
25 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] 0.464 -0.094
26 267300_at AT2G30140 UGT87A2, UDP-glucosyl transferase 87A2 0.446 0.317
27 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 0.441 0.566
28 255912_at AT1G66960 LUP5 0.423 0.220
29 260239_at AT1G74360 [Leucine-rich repeat protein kinase family protein] 0.412 -0.026
30 251884_at AT3G54150 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.409 0.353
31 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 0.406 0.242
32 253181_at AT4G35180 LHT7, LYS/HIS transporter 7 0.403 0.027
33 267546_at AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 0.400 0.164
34 267413_at AT2G34960 CAT5, cationic amino acid transporter 5 0.396 -0.221
35 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.382 0.472
36 257154_at AT3G27210 unknown 0.378 0.386
37 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 0.376 -0.059
38 248060_at AT5G55560 [Protein kinase superfamily protein] 0.376 0.410
39 267436_at AT2G19190 FRK1, FLG22-induced receptor-like kinase 1 0.370 0.258
40 258385_at AT3G15510 ANAC056, Arabidopsis NAC domain containing protein 56, ATNAC2, NAC domain containing protein 2, NAC2, NAC domain containing protein 2, NARS1, NAC-REGULATED SEED MORPHOLOGY 1 0.369 0.271
41 254543_at AT4G19810 ChiC, class V chitinase 0.366 0.355
42 265161_at AT1G30900 BP80-3;3, binding protein of 80 kDa 3;3, VSR3;3, VACUOLAR SORTING RECEPTOR 3;3, VSR6, VACUOLAR SORTING RECEPTOR 6 0.360 -0.122
43 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 0.347 -0.150
44 252060_at AT3G52430 ATPAD4, ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, PAD4, PHYTOALEXIN DEFICIENT 4 0.339 -0.003
45 246988_at AT5G67340 [ARM repeat superfamily protein] 0.335 0.551
46 252825_at AT4G39890 AtRABH1c, RAB GTPase homolog H1C, RABH1c, RAB GTPase homolog H1C 0.331 0.098
47 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.325 0.436
48 248333_at AT5G52390 [PAR1 protein] 0.322 1.081
49 265189_at AT1G23840 unknown 0.321 0.018
50 257625_at AT3G26230 CYP71B24, cytochrome P450, family 71, subfamily B, polypeptide 24 0.317 0.235
51 251673_at AT3G57240 AtBG3, BG3, beta-1,3-glucanase 3 0.316 0.119
52 261023_at AT1G12200 FMO, flavin monooxygenase 0.311 0.059
53 265356_at AT2G16595 [Translocon-associated protein (TRAP), alpha subunit] 0.309 0.284
54 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.307 0.492
55 255794_at AT2G33480 ANAC041, NAC domain containing protein 41, NAC041, NAC domain containing protein 41 0.304 0.135
56 250267_at AT5G12930 unknown 0.303 0.166
57 266017_at AT2G18690 unknown 0.303 0.771
58 256697_at AT3G20660 AtOCT4, organic cation/carnitine transporter4, OCT4, organic cation/carnitine transporter4 0.303 0.281
59 249309_at AT5G41410 BEL1, BELL 1 0.296 -0.018
60 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 0.295 -0.003
61 254500_at AT4G20110 BP80-3;1, binding protein of 80 kDa 3;1, VSR3;1, VACUOLAR SORTING RECEPTOR 3;1, VSR7, VACUOLAR SORTING RECEPTOR 7 0.288 0.307
62 259852_at AT1G72280 AERO1, endoplasmic reticulum oxidoreductins 1, ERO1, endoplasmic reticulum oxidoreductins 1 0.285 0.473
63 250400_at AT5G10740 [Protein phosphatase 2C family protein] 0.285 0.197
64 261456_at AT1G21050 unknown 0.282 -0.043
65 266167_at AT2G38860 DJ-1e, DJ1E, YLS5 0.279 0.256
66 262378_at AT1G72830 ATHAP2C, HAP2C, NF-YA3, nuclear factor Y, subunit A3 0.277 0.114
67 257535_at AT3G09490 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.275 0.398
68 251342_at AT3G60690 SAUR59, SMALL AUXIN UPREGULATED RNA 59 0.275 0.037
69 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.274 -0.013
70 266992_at AT2G39200 ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, MILDEW RESISTANCE LOCUS O 12 0.273 0.522
71 259598_at AT1G27980 ATDPL1, DPL1, dihydrosphingosine phosphate lyase 0.273 0.276
72 265620_at AT2G27310 [F-box family protein] 0.271 0.018
73 253519_at AT4G31240 AtNRX2, NRX2, nucleoredoxin 2 0.265 0.505
74 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.260 0.166
75 255595_at AT4G01700 [Chitinase family protein] 0.256 0.443
76 246098_at AT5G20400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.254 0.344
77 245431_at AT4G17080 [Histone H3 K4-specific methyltransferase SET7/9 family protein] 0.254 -0.044
78 263605_at AT2G16485 NERD, Needed for RDR2-independent DNA methylation 0.252 0.020
79 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.251 -0.073
80 263183_at AT1G05570 ATGSL06, ATGSL6, CALS1, callose synthase 1, GSL06, GSL6, GLUCAN SYNTHASE-LIKE 6 0.251 -0.081
81 245293_at AT4G16660 [heat shock protein 70 (Hsp 70) family protein] 0.244 0.172
82 260201_at AT1G67600 [Acid phosphatase/vanadium-dependent haloperoxidase-related protein] 0.239 -0.005
83 262177_at AT1G74710 ATICS1, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ICS1, ISOCHORISMATE SYNTHASE 1, SID2, SALICYLIC ACID INDUCTION DEFICIENT 2 0.239 -0.573
84 246004_at AT5G20630 ATGER3, ARABIDOPSIS THALIANA GERMIN 3, GER3, germin 3, GLP3, GERMIN-LIKE PROTEIN 3, GLP3A, GLP3B -0.923 -0.590
85 260982_at AT1G53520 AtFAP3, FAP3, fatty-acid-binding protein 3 -0.686 -0.361
86 245422_at AT4G17470 [alpha/beta-Hydrolases superfamily protein] -0.682 -0.571
87 245980_at AT5G13140 [Pollen Ole e 1 allergen and extensin family protein] -0.554 -0.224
88 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 -0.507 0.609
89 252997_at AT4G38400 ATEXLA2, expansin-like A2, ATEXPL2, ATHEXP BETA 2.2, EXLA2, expansin-like A2, EXPL2, EXPANSIN L2 -0.499 0.023
90 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 -0.491 0.230
91 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 -0.461 -0.905
92 263480_at AT2G04032 ZIP7, zinc transporter 7 precursor -0.459 -0.227
93 245196_at AT1G67750 [Pectate lyase family protein] -0.447 0.507
94 260028_at AT1G29980 unknown -0.445 0.282
95 262830_at AT1G14700 ATPAP3, PAP3, purple acid phosphatase 3 -0.441 -0.278
96 255549_at AT4G01950 ATGPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3, GPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3 -0.429 -0.353
97 266715_at AT2G46780 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.428 -0.068
98 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 -0.424 -0.050
99 253191_at AT4G35350 XCP1, xylem cysteine peptidase 1 -0.419 -0.103
100 266447_at AT2G43290 MSS3, multicopy suppressors of snf4 deficiency in yeast 3 -0.411 0.035
101 246200_at AT4G37240 unknown -0.404 0.222
102 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] -0.402 0.057
103 246993_at AT5G67450 AZF1, zinc-finger protein 1, ZF1, zinc-finger protein 1 -0.401 0.117
104 263628_at AT2G04780 FLA7, FASCICLIN-like arabinoogalactan 7 -0.396 -0.102
105 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 -0.392 -0.285
106 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] -0.388 -0.679
107 262354_at AT1G64200 VHA-E3, vacuolar H+-ATPase subunit E isoform 3 -0.388 -0.155
108 253643_at AT4G29780 unknown -0.381 -0.280
109 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 -0.361 -0.056
110 259185_at AT3G01550 ATPPT2, PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2, PPT2, phosphoenolpyruvate (pep)/phosphate translocator 2 -0.356 -1.073
111 251955_at AT3G53680 [Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain] -0.353 -0.114
112 252377_at AT3G47960 AtNPF2.10, GTR1, GLUCOSINOLATE TRANSPORTER-1, NPF2.10, NRT1/ PTR family 2.10 -0.351 -0.023
113 250006_at AT5G18660 PCB2, PALE-GREEN AND CHLOROPHYLL B REDUCED 2 -0.350 -0.805
114 266418_at AT2G38750 ANNAT4, annexin 4, AtANN4 -0.345 -0.003
115 248975_at AT5G45040 CYTC6A, cytochrome c6A -0.345 -0.500
116 252374_at AT3G48100 ARR5, response regulator 5, ATRR2, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, IBC6, INDUCED BY CYTOKININ 6, RR5, response regulator 5 -0.342 -0.153
117 252365_at AT3G48350 CEP3, cysteine endopeptidase 3 -0.340 -0.549
118 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 -0.340 -0.330
119 263726_at AT2G13610 ABCG5, ATP-binding cassette G5 -0.335 -0.046
120 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 -0.333 0.035
121 247100_at AT5G66520 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.329 -0.674
122 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.326 -0.329
123 261175_at AT1G04800 [glycine-rich protein] -0.321 -0.173
124 252943_at AT4G39330 ATCAD9, CAD9, cinnamyl alcohol dehydrogenase 9 -0.320 -0.147
125 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 -0.314 -0.270
126 247524_at AT5G61440 ACHT5, atypical CYS HIS rich thioredoxin 5 -0.309 -0.185
127 262290_at AT1G70985 [hydroxyproline-rich glycoprotein family protein] -0.309 -0.739
128 252143_at AT3G51150 [ATP binding microtubule motor family protein] -0.306 -0.575
129 251846_at AT3G54560 HTA11, histone H2A 11 -0.303 0.051
130 252363_at AT3G48460 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.300 -0.134
131 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 -0.299 0.126
132 250661_at AT5G07030 [Eukaryotic aspartyl protease family protein] -0.296 -0.113
133 259979_at AT1G76600 unknown -0.296 -0.021
134 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 -0.289 0.615
135 249932_at AT5G22390 unknown -0.289 -0.600
136 253480_at AT4G31840 AtENODL15, ENODL15, early nodulin-like protein 15 -0.287 0.074
137 262414_at AT1G49430 LACS2, long-chain acyl-CoA synthetase 2, LRD2, LATERAL ROOT DEVELOPMENT 2 -0.287 -0.153
138 264096_at AT1G78995 unknown -0.285 -0.713
139 261801_at AT1G30520 AAE14, acyl-activating enzyme 14 -0.285 -0.693
140 265118_at AT1G62660 [Glycosyl hydrolases family 32 protein] -0.284 0.002
141 261256_at AT1G05760 RTM1, restricted tev movement 1 -0.283 -0.035
142 264179_at AT1G02180 [ferredoxin-related] -0.282 -0.051
143 248597_at AT5G49160 DDM2, DECREASED DNA METHYLATION 2, DMT01, DNA METHYLTRANSFERASE 01, DMT1, DNA METHYLTRANSFERASE 1, MET1, methyltransferase 1, MET2, METHYLTRANSFERASE 2, METI, METHYLTRANSFERASE I -0.280 -0.109
144 250820_at AT5G05160 RUL1, REDUCED IN LATERAL GROWTH1 -0.280 0.185
145 245743_at AT1G51080 unknown -0.278 -0.254
146 259014_at AT3G07320 [O-Glycosyl hydrolases family 17 protein] -0.277 0.240
147 261570_at AT1G01120 KCS1, 3-ketoacyl-CoA synthase 1 -0.277 -0.091
148 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 -0.274 -0.121
149 267038_at AT2G38480 [Uncharacterised protein family (UPF0497)] -0.272 0.257
150 261949_at AT1G64670 BDG1, BODYGUARD1, CED1, 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1 -0.272 -0.208
151 253522_at AT4G31290 AtGGCT2;2, GGCT2;2, gamma-glutamyl cyclotransferase 2;2 -0.269 0.038
152 247213_at AT5G64900 ATPEP1, ARABIDOPSIS THALIANA PEPTIDE 1, PEP1, PEPTIDE 1, PROPEP1, precursor of peptide 1 -0.268 0.178
153 263127_at AT1G78610 MSL6, mechanosensitive channel of small conductance-like 6 -0.266 0.101
154 265732_at AT2G01300 unknown -0.264 -0.196
155 251395_at AT2G45470 AGP8, ARABINOGALACTAN PROTEIN 8, FLA8, FASCICLIN-like arabinogalactan protein 8 -0.263 -0.206
156 247977_at AT5G56850 unknown -0.263 -0.691
157 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] -0.260 -0.059
158 251982_at AT3G53190 [Pectin lyase-like superfamily protein] -0.260 0.122
159 249061_at AT5G44550 [Uncharacterised protein family (UPF0497)] -0.258 0.223
160 251714_at AT3G56370 [Leucine-rich repeat protein kinase family protein] -0.258 -0.059
161 248094_at AT5G55220 [trigger factor type chaperone family protein] -0.258 -0.736
162 264315_at AT1G70370 PG2, polygalacturonase 2 -0.255 -0.035
163 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A -0.253 -0.195
164 249278_at AT5G41900 [alpha/beta-Hydrolases superfamily protein] -0.248 -0.056
165 253579_at AT4G30610 BRS1, BRI1 SUPPRESSOR 1, SCPL24, SERINE CARBOXYPEPTIDASE 24 PRECURSOR -0.248 -0.185