4.0:Information of module
SHR-GR Time 1H Dex
In comparison with xyl-grown cell culture- 1h 1mM Suc help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 2.045e-07
GO:0042221 response to chemical BP 1.998e-06
GO:0009719 response to endogenous stimulus BP 7.160e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006996 organelle organization BP 3.783e-10
GO:0009560 embryo sac egg cell differentiation BP 4.709e-10
GO:0006139 nucleobase-containing compound metabolic... BP 5.224e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
SHR-GR Time 1H Dex		 Log2 signal ratio
xyl-grown cell culture- 1h 1mM Suc
1 256991_at AT3G28600 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.888 -0.020
2 251517_at AT3G59370 [Vacuolar calcium-binding protein-related] 0.695 0.027
3 254652_at AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 0.586 -0.003
4 263470_at AT2G31900 ATMYO5, MYOSIN 5, ATXIF, MYOSIN XI F, XIF, myosin-like protein XIF 0.501 -0.114
5 261991_at AT1G33700 [Beta-glucosidase, GBA2 type family protein] 0.467 -0.076
6 257517_at AT3G16330 unknown 0.440 0.071
7 260648_at AT1G08050 [Zinc finger (C3HC4-type RING finger) family protein] 0.420 -0.033
8 245447_at AT4G16820 DALL1, DAD1-Like Lipase 1, PLA-I{beta]2, phospholipase A I beta 2 0.418 0.010
9 245568_at AT4G14650 unknown 0.413 0.021
10 252557_at AT3G45960 ATEXLA3, expansin-like A3, ATEXPL3, ATHEXP BETA 2.3, EXLA3, expansin-like A3, EXPL3 0.411 0.057
11 253799_at AT4G28140 [Integrase-type DNA-binding superfamily protein] 0.410 0.069
12 250070_at AT5G17980 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] 0.405 -0.018
13 259371_at AT1G69080 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.395 0.022
14 256097_at AT1G13670 unknown 0.386 0.044
15 246125_at AT5G19875 unknown 0.378 0.010
16 259161_at AT3G01500 ATBCA1, BETA CARBONIC ANHYDRASE 1, ATSABP3, ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, CA1, carbonic anhydrase 1, SABP3, SALICYLIC ACID-BINDING PROTEIN 3 0.373 0.111
17 261261_at AT1G26730 [EXS (ERD1/XPR1/SYG1) family protein] 0.370 0.042
18 248317_at AT5G52680 [Copper transport protein family] 0.369 0.054
19 263451_at AT2G31690 DALL5, DAD1-Like Lipase 5 0.366 -0.031
20 253998_at AT4G26010 [Peroxidase superfamily protein] 0.326 -0.038
21 249094_at AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 0.318 0.039
22 265418_at AT2G20880 AtERF53, ERF53, ERF domain 53 0.316 0.014
23 253841_at AT4G27830 AtBGLU10, BGLU10, beta glucosidase 10 0.314 0.002
24 260371_at AT1G69690 AtTCP15, TCP15, TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15 0.313 -0.036
25 267127_at AT2G23610 ATMES3, ARABIDOPSIS THALIANA METHYL ESTERASE 3, MES3, methyl esterase 3 0.309 0.100
26 257401_at AT1G23550 SRO2, similar to RCD one 2 0.303 0.037
27 251200_at AT3G63010 ATGID1B, GID1B, GA INSENSITIVE DWARF1B 0.302 0.000
28 266325_at AT2G46630 unknown 0.297 0.003
29 262162_at AT1G78020 unknown 0.290 0.034
30 250811_at AT5G05110 [Cystatin/monellin family protein] 0.286 0.045
31 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 0.277 0.072
32 267496_at AT2G30550 DALL3, DAD1-Like Lipase 3 0.274 0.007
33 264605_at AT1G04550 BDL, BODENLOS, IAA12, indole-3-acetic acid inducible 12 0.273 0.015
34 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 0.271 0.062
35 266010_at AT2G37430 ZAT11, zinc finger of Arabidopsis thaliana 11 0.260 0.133
36 259680_at AT1G77690 LAX3, like AUX1 3 0.258 0.030
37 245341_at AT4G16447 unknown 0.257 -0.004
38 260567_at AT2G43820 ATSAGT1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, GT, SAGT1, salicylic acid glucosyltransferase 1, SGT1, UDP-glucose:salicylic acid glucosyltransferase 1, UGT74F2, UDP-glucosyltransferase 74F2 0.252 -0.017
39 250821_at AT5G05190 unknown 0.250 -0.024
40 250682_x_at AT5G06630 [proline-rich extensin-like family protein] 0.245 0.033
41 260024_at AT1G30080 [Glycosyl hydrolase superfamily protein] 0.239 -0.059
42 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] 0.234 -0.058
43 245495_at AT4G16400 unknown 0.231 0.061
44 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.230 0.027
45 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 0.229 0.184
46 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.226 0.053
47 265357_at AT2G16740 UBC29, ubiquitin-conjugating enzyme 29 0.220 0.086
48 261429_at AT1G18860 ATWRKY61, WRKY DNA-BINDING PROTEIN 61, WRKY61, WRKY DNA-binding protein 61 0.220 -0.022
49 253284_at AT4G34150 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.218 -0.131
50 267232_at AT2G44190 EDE1, ENDOSPERM DEFECTIVE 1, EMB3116, EMBRYO DEFECTIVE 3116, QWRF5, QWRF domain containing 5 -0.382 0.011
51 264550_at AT1G09450 AtHaspin, Haspin, Haspin-related gene -0.361 -0.046
52 259763_at AT1G77630 LYM3, lysin-motif (LysM) domain protein 3, LYP3, LysM-containing receptor protein 3 -0.352 -0.052
53 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 -0.324 -0.028
54 248938_at AT5G45780 [Leucine-rich repeat protein kinase family protein] -0.323 0.012
55 256612_at AT3G29280 unknown -0.304 0.055
56 258120_at AT3G14730 [Pentatricopeptide repeat (PPR) superfamily protein] -0.289 0.062
57 255700_at AT4G00200 AHL7, AT-hook motif nuclear localized protein 7 -0.283 0.122
58 246282_at AT4G36580 [AAA-type ATPase family protein] -0.268 0.036
59 258471_at AT3G06030 ANP3, NPK1-related protein kinase 3, AtANP3, MAPKKK12, NP3, NPK1-related protein kinase 3 -0.266 -0.059
60 264814_at AT2G17900 ASHR1, ASH1-related 1, SDG37, SET domain group 37 -0.263 -0.018
61 267148_at AT2G23470 RUS4, ROOT UV-B SENSITIVE 4 -0.257 0.025
62 257685_at AT3G12770 MEF22, mitochondrial editing factor 22 -0.252 -0.027
63 248177_at AT5G54630 [zinc finger protein-related] -0.252 -0.030
64 246269_at AT4G37110 [Zinc-finger domain of monoamine-oxidase A repressor R1] -0.250 0.010
65 265104_at AT1G31020 ATO2, thioredoxin O2, TO2, thioredoxin O2 -0.246 0.029
66 251224_at AT3G62620 [sucrose-phosphatase-related] -0.246 0.036
67 250785_at AT5G05510 [Mad3/BUB1 homology region 1] -0.242 -0.005
68 246415_at AT5G17160 unknown -0.241 -0.036
69 266102_at AT2G40720 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.239 0.092
70 251522_at AT3G59430 unknown -0.237 0.015
71 250126_at AT5G16310 UCH1 -0.235 0.011
72 250812_at AT5G04900 NOL, NYC1-like -0.234 0.036
73 260192_at AT1G67630 EMB2814, EMBRYO DEFECTIVE 2814, POLA2, DNA polymerase alpha 2 -0.234 -0.015
74 247943_at AT5G57170 [Tautomerase/MIF superfamily protein] -0.232 0.048
75 249546_at AT5G38150 PMI15, plastid movement impaired 15 -0.231 0.023
76 247339_at AT5G63690 [Nucleic acid-binding, OB-fold-like protein] -0.220 -0.025
77 261205_at AT1G12790 unknown -0.217 0.007
78 256864_at AT3G23890 ATTOPII, TOPII, topoisomerase II -0.217 -0.046
79 252416_at AT3G47460 ATSMC2 -0.216 0.037
80 245743_at AT1G51080 unknown -0.216 0.049
81 254437_s_at AT3G06433 [pseudogene] -0.216 -0.026
82 263474_at AT2G31725 unknown -0.215 0.073
83 257361_at AT2G07740 [similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1)] -0.214 -0.047
84 261857_at AT1G50620 [RING/FYVE/PHD zinc finger superfamily protein] -0.212 -0.055
85 262150_at AT1G52520 FRS6, FAR1-related sequence 6 -0.212 -0.107
86 262561_at AT1G34340 [alpha/beta-Hydrolases superfamily protein] -0.211 0.019
87 257352_at AT2G34900 GTE01, GTE1, GLOBAL TRANSCRIPTION FACTOR GROUP E1, IMB1, IMBIBITION-INDUCIBLE 1 -0.211 0.049
88 260524_at AT2G47230 unknown -0.210 -0.017
89 262201_at AT2G01120 ATORC4, ORIGIN RECOGNITION COMPLEX SUBUNIT 4, ORC4, origin recognition complex subunit 4 -0.210 0.025
90 256107_at AT1G16830 [Pentatricopeptide repeat (PPR) superfamily protein] -0.207 0.046
91 261451_at AT1G21060 unknown -0.205 0.099
92 253848_at AT4G28020 unknown -0.201 0.001
93 261435_at AT1G07615 [GTP-binding protein Obg/CgtA] -0.201 -0.002
94 265865_at AT2G01740 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.200 0.040
95 264689_at AT1G09900 [Pentatricopeptide repeat (PPR-like) superfamily protein] -0.199 0.014
96 259422_at AT1G13810 [Restriction endonuclease, type II-like superfamily protein] -0.198 0.042
97 250369_at AT5G11300 CYC2BAT, CYC3B, mitotic-like cyclin 3B from Arabidopsis, CYCA2;2, CYCLIN A2;2 -0.196 -0.016