4.0:Information of module
psae1-3 stn7-1
In comparison with Elevated CO2 AMPLE N DAY help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009657 plastid organization BP 1.521e-13
GO:0009658 chloroplast organization BP 5.789e-11
GO:0009668 plastid membrane organization BP 9.722e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044272 sulfur compound biosynthetic process BP 5.496e-12
GO:0006790 sulfur compound metabolic process BP 1.666e-10
GO:0044711 single-organism biosynthetic process BP 4.551e-10
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
psae1-3 stn7-1		 Log2 signal ratio
Elevated CO2 AMPLE N DAY
1 256527_at AT1G66100 [Plant thionin] 1.642 -0.027
2 264958_at AT1G76960 unknown 1.264 0.253
3 260312_at AT1G63880 [Disease resistance protein (TIR-NBS-LRR class) family] 1.025 0.000
4 261339_at AT1G35710 [Protein kinase family protein with leucine-rich repeat domain] 1.014 0.129
5 256497_at AT1G31580 CXC750, ECS1 1.010 -0.001
6 262010_at AT1G35612 [expressed protein] 1.007 -0.030
7 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 0.962 0.510
8 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 0.950 0.039
9 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] 0.923 0.065
10 245729_at AT1G73490 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.896 0.007
11 263023_at AT1G23960 unknown 0.872 0.012
12 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.865 -0.031
13 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.860 0.607
14 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.842 0.349
15 256021_at AT1G58270 ZW9 0.785 0.031
16 249645_at AT5G36910 THI2.2, thionin 2.2 0.777 -0.153
17 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] 0.766 0.043
18 257476_at AT1G80960 [F-box and Leucine Rich Repeat domains containing protein] 0.735 0.000
19 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.730 0.112
20 247314_at AT5G64000 ATSAL2, SAL2 0.729 0.355
21 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 0.721 0.007
22 248415_at AT5G51620 [Uncharacterised protein family (UPF0172)] 0.716 0.004
23 263007_at AT1G54260 [winged-helix DNA-binding transcription factor family protein] 0.716 -0.012
24 254252_at AT4G23310 CRK23, cysteine-rich RLK (RECEPTOR-like protein kinase) 23 0.692 0.217
25 256386_at AT1G66540 [Cytochrome P450 superfamily protein] 0.690 -0.124
26 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] 0.670 0.427
27 252136_at AT3G50770 CML41, calmodulin-like 41 0.663 0.190
28 262669_at AT1G62850 [Class I peptide chain release factor] 0.614 0.011
29 256874_at AT3G26320 CYP71B36, cytochrome P450, family 71, subfamily B, polypeptide 36 0.578 0.038
30 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 0.541 0.401
31 261167_at AT1G04980 ATPDI10, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, ATPDIL2-2, PDI-like 2-2, PDI10, PROTEIN DISULFIDE ISOMERASE, PDIL2-2, PDI-like 2-2 0.500 0.228
32 260881_at AT1G21550 [Calcium-binding EF-hand family protein] 0.489 0.156
33 250302_at AT5G11920 AtcwINV6, 6-&1-fructan exohydrolase, cwINV6, 6-&1-fructan exohydrolase 0.479 0.235
34 262244_at AT1G48260 CIPK17, CBL-interacting protein kinase 17, SnRK3.21, SNF1-RELATED PROTEIN KINASE 3.21 0.472 -0.001
35 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 0.472 0.422
36 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 0.457 0.168
37 264166_at AT1G65370 [TRAF-like family protein] 0.456 0.009
38 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 0.453 0.090
39 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.451 0.352
40 259822_at AT1G66230 AtMYB20, myb domain protein 20, MYB20, myb domain protein 20 0.449 -0.119
41 252629_at AT3G44970 [Cytochrome P450 superfamily protein] 0.449 0.149
42 250755_at AT5G05750 [DNAJ heat shock N-terminal domain-containing protein] 0.427 0.025
43 256303_at AT1G69550 [disease resistance protein (TIR-NBS-LRR class)] 0.426 -0.043
44 256493_at AT1G31600 AtTRM9, Arabidopsis thaliana tRNA methyltransferase 9, TRM9, tRNA methyltransferase 9 0.415 -0.013
45 251024_at AT5G02180 [Transmembrane amino acid transporter family protein] 0.412 -0.084
46 260664_at AT1G19510 ATRL5, RAD-like 5, RL5, RAD-like 5, RSM4, RADIALIS-LIKE SANT/MYB 4 0.404 -0.034
47 246393_at AT1G58150 unknown 0.394 -0.035
48 259968_at AT1G76530 [Auxin efflux carrier family protein] 0.367 0.091
49 245349_at AT4G16690 ATMES16, ARABIDOPSIS THALIANA METHYL ESTERASE 16, MES16, methyl esterase 16 0.366 -0.102
50 247954_at AT5G56870 BGAL4, beta-galactosidase 4 0.363 0.195
51 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 0.359 0.055
52 257485_at AT1G63580 [Receptor-like protein kinase-related family protein] 0.358 -0.055
53 249724_at AT5G35450 [Disease resistance protein (CC-NBS-LRR class) family] 0.356 -0.086
54 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.355 0.348
55 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 0.353 -0.035
56 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] 0.353 0.249
57 251107_at AT5G01610 unknown 0.348 0.052
58 264826_at AT1G03410 2A6 0.339 -0.081
59 249774_at AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 0.333 -0.072
60 250974_at AT5G02820 BIN5, BRASSINOSTEROID INSENSITIVE 5, RHL2, ROOT HAIRLESS 2 0.330 0.011
61 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 0.324 -0.030
62 256361_at AT1G66520 pde194, pigment defective 194 0.313 -0.020
63 246966_at AT5G24850 CRY3, cryptochrome 3 0.313 -0.005
64 260938_at AT1G45170 unknown 0.308 -0.016
65 263106_at AT2G05160 [CCCH-type zinc fingerfamily protein with RNA-binding domain] 0.306 -0.096
66 255694_at AT4G00050 UNE10, unfertilized embryo sac 10 0.305 -0.099
67 245965_at AT5G19730 [Pectin lyase-like superfamily protein] 0.305 -0.184
68 264101_at AT1G79000 ATHAC1, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, ATHPCAT2, ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, HAC1, histone acetyltransferase of the CBP family 1, PCAT2, P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2 0.304 -0.046
69 249754_at AT5G24530 DMR6, DOWNY MILDEW RESISTANT 6 0.304 0.209
70 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 0.301 0.040
71 250537_at AT5G08565 [Transcription initiation Spt4-like protein] 0.298 -0.020
72 260734_at AT1G17600 [Disease resistance protein (TIR-NBS-LRR class) family] 0.295 0.047
73 256096_at AT1G13650 unknown 0.291 -0.113
74 263288_at AT2G36130 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] 0.285 0.013
75 256522_at AT1G66160 ATCMPG1, CMPG1, CYS, MET, PRO, and GLY protein 1 0.281 0.082
76 264692_at AT1G70000 [myb-like transcription factor family protein] 0.280 -0.024
77 256503_at AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 0.276 -0.124
78 264731_at AT1G62150 [Mitochondrial transcription termination factor family protein] 0.273 -0.004
79 251422_at AT3G60540 [Preprotein translocase Sec, Sec61-beta subunit protein] 0.269 0.211
80 247581_at AT5G61350 [Protein kinase superfamily protein] 0.268 -0.219
81 250696_at AT5G06790 unknown 0.267 -0.068
82 264666_at AT1G09680 [Pentatricopeptide repeat (PPR) superfamily protein] 0.265 0.072
83 248330_at AT5G52810 [NAD(P)-binding Rossmann-fold superfamily protein] 0.264 0.102
84 260774_at AT1G78290 SNRK2-8, SNF1-RELATED PROTEIN KINASE 2-8, SNRK2.8, SNF1-RELATED PROTEIN KINASE 2.8, SRK2C, SNF1-RELATED PROTEIN KINASE 2C 0.264 -0.016
85 247345_at AT5G63760 ARI15, ARIADNE 15, ATARI15, ARABIDOPSIS ARIADNE 15 0.261 -0.005
86 265260_at AT2G43000 ANAC042, NAC domain containing protein 42, JUB1, JUNGBRUNNEN 1, NAC042, NAC domain containing protein 42 0.257 0.269
87 246411_at AT1G57770 [FAD/NAD(P)-binding oxidoreductase family protein] 0.257 -0.072
88 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.255 -0.041
89 246236_at AT4G36470 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.254 0.035
90 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 0.252 0.344
91 262908_at AT1G59900 AT-E1 ALPHA, pyruvate dehydrogenase complex E1 alpha subunit, E1 ALPHA, pyruvate dehydrogenase complex E1 alpha subunit 0.251 0.018
92 260036_at AT1G68830 STN7, STT7 homolog STN7 -1.352 -0.027
93 245736_at AT1G73330 ATDR4, drought-repressed 4, DR4, drought-repressed 4 -1.132 0.140
94 253738_at AT4G28750 PSAE-1, PSA E1 KNOCKOUT -0.971 -0.009
95 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -0.963 0.072
96 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.888 0.083
97 264987_at AT1G27030 unknown -0.804 -0.076
98 250135_at AT5G15360 unknown -0.778 -0.027
99 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 -0.721 0.045
100 264741_at AT1G62290 [Saposin-like aspartyl protease family protein] -0.701 -0.027
101 259568_at AT1G20490 [AMP-dependent synthetase and ligase family protein] -0.697 -0.039
102 262978_at AT1G75780 TUB1, tubulin beta-1 chain -0.697 0.022
103 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] -0.683 0.011
104 258983_at AT3G08860 PYD4, PYRIMIDINE 4 -0.645 0.130
105 266989_at AT2G39330 JAL23, jacalin-related lectin 23 -0.639 0.260
106 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 -0.628 -0.032
107 263032_at AT1G23850 unknown -0.623 0.097
108 261544_at AT1G63540 [hydroxyproline-rich glycoprotein family protein] -0.595 0.053
109 264271_at AT1G60270 BGLU6, beta glucosidase 6 -0.570 -0.016
110 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] -0.549 0.195
111 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY -0.542 0.041
112 246552_at AT5G15420 unknown -0.538 0.071
113 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 -0.528 0.101
114 254377_at AT4G21650 [Subtilase family protein] -0.518 0.037
115 262891_at AT1G79460 ATKS, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, ATKS1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, GA2, GA REQUIRING 2, KS, KS1, ENT-KAURENE SYNTHASE 1 -0.498 -0.033
116 246168_at AT5G32460 [Transcriptional factor B3 family protein] -0.495 0.019
117 262665_at AT1G14070 FUT7, fucosyltransferase 7 -0.487 0.010
118 264887_at AT1G23120 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.481 0.083
119 253036_at AT4G38340 NLP3, NIN-like protein 3 -0.459 -0.002
120 247225_at AT5G65090 BST1, BRISTLED 1, DER4, DEFORMED ROOT HAIRS 4, MRH3 -0.454 0.215
121 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 -0.434 0.029
122 264916_at AT1G60810 ACLA-2, ATP-citrate lyase A-2 -0.421 -0.027
123 259398_at AT1G17700 PRA1.F1, prenylated RAB acceptor 1.F1 -0.399 0.004
124 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 -0.398 -0.009
125 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 -0.392 -0.054
126 246855_at AT5G26280 [TRAF-like family protein] -0.387 -0.005
127 263178_at AT1G05550 unknown -0.387 0.005
128 247812_at AT5G58390 [Peroxidase superfamily protein] -0.370 0.099
129 247239_at AT5G64640 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.361 -0.077
130 247348_at AT5G63810 AtBGAL10, Arabidopsis thaliana beta-galactosidase 10, BGAL10, beta-galactosidase 10 -0.358 -0.049
131 257275_at AT3G14450 CID9, CTC-interacting domain 9 -0.357 -0.019
132 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase -0.356 -0.039
133 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 -0.354 -0.001
134 262464_at AT1G50280 [Phototropic-responsive NPH3 family protein] -0.347 -0.098
135 246550_at AT5G14920 GASA14, A-stimulated in Arabidopsis 14 -0.340 0.077
136 256145_at AT1G48750 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.339 -0.006
137 261826_at AT1G11580 ATPMEPCRA, PMEPCRA, methylesterase PCR A -0.336 0.034
138 259441_at AT1G02300 [Cysteine proteinases superfamily protein] -0.335 0.032
139 256244_at AT3G12520 SULTR4;2, sulfate transporter 4;2 -0.333 -0.042
140 253254_at AT4G34650 SQS2, squalene synthase 2 -0.328 -0.116
141 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] -0.320 -0.018
142 258652_at AT3G09910 ATRAB18C, ATRABC2B, RAB GTPase homolog C2B, RABC2b, RAB GTPase homolog C2B -0.313 0.081
143 265828_at AT2G14520 unknown -0.307 0.056
144 254327_at AT4G22490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.302 0.060
145 262529_at AT1G17250 AtRLP3, receptor like protein 3, RFO2, RESISTANCE TO FUSARIUM OXYSPORUM 2, RLP3, receptor like protein 3 -0.300 0.134
146 262198_at AT1G53830 ATPME2, pectin methylesterase 2, PME2, pectin methylesterase 2 -0.293 0.047
147 254914_at AT4G11290 [Peroxidase superfamily protein] -0.292 0.269
148 254186_at AT4G24010 ATCSLG1, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G1, CSLG1, cellulose synthase like G1 -0.291 0.004
149 263151_at AT1G54120 unknown -0.288 0.008
150 256150_at AT1G55120 AtcwINV3, 6-fructan exohydrolase, ATFRUCT5, beta-fructofuranosidase 5, FRUCT5, beta-fructofuranosidase 5 -0.283 0.028
151 252529_at AT3G46490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.282 -0.099
152 263120_at AT1G78490 CYP708A3, cytochrome P450, family 708, subfamily A, polypeptide 3 -0.280 0.024
153 255302_at AT4G04830 ATMSRB5, methionine sulfoxide reductase B5, MSRB5, methionine sulfoxide reductase B5 -0.276 0.015
154 266439_s_at AT2G43200 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.275 -0.097
155 259169_at AT3G03520 NPC3, non-specific phospholipase C3 -0.273 -0.009
156 261367_at AT1G53080 [Legume lectin family protein] -0.272 -0.054
157 259915_at AT1G72790 [hydroxyproline-rich glycoprotein family protein] -0.272 0.018
158 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 -0.271 -0.047
159 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.271 -0.015
160 250127_at AT5G16380 unknown -0.265 0.052
161 250233_at AT5G13460 IQD11, IQ-domain 11 -0.263 -0.082
162 249059_at AT5G44530 [Subtilase family protein] -0.260 -0.080
163 254362_at AT4G22160 unknown -0.255 0.006
164 261806_at AT1G30510 ATRFNR2, root FNR 2, RFNR2, root FNR 2 -0.255 0.002
165 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 -0.253 0.013
166 260169_at AT1G71990 ATFT4, ARABIDOPSIS FUCOSYLTRANSFERASE 4, ATFUT13, FT4-M, FUCTC, FUT13, fucosyltransferase 13 -0.252 -0.027
167 267264_at AT2G22970 SCPL11, serine carboxypeptidase-like 11 -0.249 0.005
168 259796_at AT1G64270 [Mutator-like transposase family, has a 1.0e-06 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.249 -0.063
169 265842_at AT2G35700 ATERF38, ERF FAMILY PROTEIN 38, ERF38, ERF family protein 38 -0.249 -0.020
170 263733_at AT1G60020 [copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa)] -0.246 0.022
171 259794_at AT1G64330 [myosin heavy chain-related] -0.236 0.004
172 257922_at AT3G23150 ETR2, ethylene response 2 -0.231 -0.026
173 256781_at AT3G13650 [Disease resistance-responsive (dirigent-like protein) family protein] -0.229 0.011
174 250517_at AT5G08260 scpl35, serine carboxypeptidase-like 35 -0.226 0.057
175 257224_at AT3G27870 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] -0.226 0.014
176 264179_at AT1G02180 [ferredoxin-related] -0.225 -0.016
177 263829_at AT2G40435 unknown -0.225 0.115
178 251788_at AT3G55420 unknown -0.219 -0.021
179 260902_at AT1G21440 [Phosphoenolpyruvate carboxylase family protein] -0.218 0.039
180 261947_at AT1G64470 [Ubiquitin-like superfamily protein] -0.216 0.062
181 260262_at AT1G68470 [Exostosin family protein] -0.215 -0.036