4.0:Information of module
psae1-3
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009657 plastid organization BP 1.355e-62
GO:0006081 cellular aldehyde metabolic process BP 1.838e-51
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 6.368e-51
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044272 sulfur compound biosynthetic process BP 1.970e-05
GO:0000097 sulfur amino acid biosynthetic process BP 8.388e-05
GO:0009069 serine family amino acid metabolic proce... BP 9.013e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
psae1-3		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 249645_at AT5G36910 THI2.2, thionin 2.2 0.458 -0.112
2 259172_at AT3G03630 CS26, cysteine synthase 26 0.427 0.060
3 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.410 0.002
4 247581_at AT5G61350 [Protein kinase superfamily protein] 0.409 -0.053
5 263108_at AT1G65240 [Eukaryotic aspartyl protease family protein] 0.393 0.030
6 258034_at AT3G21300 [RNA methyltransferase family protein] 0.352 -0.050
7 256096_at AT1G13650 unknown 0.348 0.043
8 263805_at AT2G40400 unknown 0.340 -0.066
9 263106_at AT2G05160 [CCCH-type zinc fingerfamily protein with RNA-binding domain] 0.337 0.004
10 263288_at AT2G36130 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] 0.325 0.038
11 260549_at AT2G43535 [Scorpion toxin-like knottin superfamily protein] 0.322 0.087
12 263918_at AT2G36590 ATPROT3, PROLINE TRANSPORTER 3, ProT3, proline transporter 3 0.312 -0.072
13 249071_at AT5G44050 [MATE efflux family protein] 0.308 -0.081
14 259015_at AT3G07350 unknown 0.308 -0.021
15 250529_at AT5G08610 PDE340, PIGMENT DEFECTIVE 340 0.303 -0.188
16 248201_at AT5G54180 PTAC15, plastid transcriptionally active 15 0.293 0.078
17 254506_at AT4G20140 GSO1, GASSHO1 0.289 -0.104
18 259968_at AT1G76530 [Auxin efflux carrier family protein] 0.288 0.032
19 262198_at AT1G53830 ATPME2, pectin methylesterase 2, PME2, pectin methylesterase 2 0.274 -0.178
20 254024_at AT4G25780 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.273 -0.186
21 266278_at AT2G29300 [NAD(P)-binding Rossmann-fold superfamily protein] 0.258 -0.063
22 251935_at AT3G54090 FLN1, fructokinase-like 1 0.249 0.094
23 261395_at AT1G79700 WRI4, WRINKLED 4 0.247 -0.051
24 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase 0.246 0.041
25 245349_at AT4G16690 ATMES16, ARABIDOPSIS THALIANA METHYL ESTERASE 16, MES16, methyl esterase 16 0.237 -0.107
26 260343_at AT1G69200 FLN2, fructokinase-like 2 0.236 0.254
27 263209_at AT1G10522 PRIN2, PLASTID REDOX INSENSITIVE 2 0.232 0.171
28 256713_at AT2G34060 [Peroxidase superfamily protein] 0.229 -0.011
29 248956_at AT5G45610 SUV2, SENSITIVE TO UV 2 0.228 0.111
30 258782_at AT3G11750 FOLB1 0.219 -0.012
31 248050_at AT5G56100 [glycine-rich protein / oleosin] 0.217 -0.041
32 267509_at AT2G45660 AGL20, AGAMOUS-like 20, ATSOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1 0.216 0.017
33 261248_at AT1G20030 [Pathogenesis-related thaumatin superfamily protein] 0.215 -0.065
34 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 0.214 0.016
35 246262_at AT1G31790 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.214 0.137
36 266957_at AT2G34640 HMR, HEMERA, PTAC12, plastid transcriptionally active 12, TAC12 0.211 -0.108
37 262897_at AT1G59840 CCB4, cofactor assembly of complex C 0.205 0.160
38 250499_at AT5G09730 ATBX3, ATBXL3, BETA-XYLOSIDASE 3, BX3, BXL3, beta-xylosidase 3, XYL3 0.203 0.041
39 266616_at AT2G29680 ATCDC6, CDC6, cell division control 6 0.202 -0.122
40 259207_at AT3G09050 unknown 0.199 0.121
41 245925_at AT5G28770 AtbZIP63, Arabidopsis thaliana basic leucine zipper 63, BZO2H3 0.198 -0.086
42 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 0.197 -0.199
43 252410_at AT3G47450 ATNOA1, ATNOS1, NOA1, NO ASSOCIATED 1, NOS1, NITRIC OXIDE SYNTHASE 1, RIF1, RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1 0.197 0.013
44 253973_at AT4G26555 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] 0.196 0.150
45 252362_at AT3G48500 PDE312, PIGMENT DEFECTIVE 312, PTAC10, PLASTID TRANSCRIPTIONALLY ACTIVE 10, TAC10 0.196 -0.040
46 258315_at AT3G16175 [Thioesterase superfamily protein] 0.195 -0.069
47 256548_at AT3G14770 AtSWEET2, SWEET2 0.189 0.154
48 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] 0.189 -0.091
49 249026_at AT5G44785 OSB3, organellar single-stranded DNA binding protein 3 0.184 0.144
50 259962_at AT1G53690 [DNA directed RNA polymerase, 7 kDa subunit] 0.182 -0.213
51 256792_at AT3G22150 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.182 -0.047
52 249472_at AT5G39210 CRR7, CHLORORESPIRATORY REDUCTION 7 0.181 0.159
53 264963_at AT1G60600 ABC4, ABERRANT CHLOROPLAST DEVELOPMENT 4 0.176 -0.116
54 248854_at AT5G46580 [pentatricopeptide (PPR) repeat-containing protein] 0.176 0.058
55 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.176 0.047
56 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.175 -0.074
57 263115_at AT1G03055 AtD27, A. thaliana homolog of rice D27, D27, DWARF27 0.175 -0.003
58 261247_at AT1G20070 unknown 0.174 -0.052
59 246411_at AT1G57770 [FAD/NAD(P)-binding oxidoreductase family protein] 0.173 -0.080
60 255053_at AT4G09730 RH39, RH39 0.172 -0.112
61 258554_at AT3G06980 [DEA(D/H)-box RNA helicase family protein] 0.171 -0.036
62 254783_at AT4G12830 [alpha/beta-Hydrolases superfamily protein] 0.171 -0.415
63 252817_at AT3G42580 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G12100.1)] 0.170 -0.027
64 245396_at AT4G14870 SECE1 0.170 -0.110
65 263864_at AT2G04530 CPZ, TRZ2, TRNASE Z 2 0.168 -0.668
66 265832_at AT2G14450 unknown 0.168 0.069
67 251036_at AT5G02160 unknown 0.168 -0.001
68 253566_at AT4G31210 [DNA topoisomerase, type IA, core] 0.166 0.239
69 253738_at AT4G28750 PSAE-1, PSA E1 KNOCKOUT -0.906 0.285
70 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.899 0.035
71 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -0.709 -0.020
72 258983_at AT3G08860 PYD4, PYRIMIDINE 4 -0.594 -0.100
73 254377_at AT4G21650 [Subtilase family protein] -0.395 0.066
74 247812_at AT5G58390 [Peroxidase superfamily protein] -0.304 0.028
75 245304_at AT4G15630 [Uncharacterised protein family (UPF0497)] -0.294 0.004
76 259403_at AT1G17745 PGDH, 3-phosphoglycerate dehydrogenase, PGDH2, phosphoglycerate dehydrogenase 2 -0.286 0.115
77 254327_at AT4G22490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.272 0.004
78 255433_at AT4G03210 XTH9, xyloglucan endotransglucosylase/hydrolase 9 -0.263 0.005
79 251090_at AT5G01340 AtmSFC1, mSFC1, mitochondrial succinate-fumarate carrier 1 -0.262 -0.109
80 254362_at AT4G22160 unknown -0.261 -0.133
81 248454_at AT5G51350 MOL1, MORE LATERAL GROWTH1 -0.217 0.067
82 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.212 0.023
83 259548_at AT1G35260 MLP165, MLP-like protein 165 -0.209 0.059
84 265842_at AT2G35700 ATERF38, ERF FAMILY PROTEIN 38, ERF38, ERF family protein 38 -0.208 0.224
85 260568_at AT2G43570 CHI, chitinase, putative -0.208 0.036
86 257824_at AT3G25290 [Auxin-responsive family protein] -0.207 -0.052
87 265740_at AT2G01150 RHA2B, RING-H2 finger protein 2B -0.204 0.147
88 247293_at AT5G64510 TIN1, tunicamycin induced 1 -0.191 -0.062
89 254014_at AT4G26120 [Ankyrin repeat family protein / BTB/POZ domain-containing protein] -0.190 0.384
90 247835_at AT5G57910 unknown -0.190 -0.094
91 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 -0.189 0.089
92 256509_at AT1G75300 [NmrA-like negative transcriptional regulator family protein] -0.185 -0.073
93 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 -0.182 -0.267
94 261491_at AT1G14350 AtMYB124, myb domain protein 124, FLP, FOUR LIPS, MYB124 -0.178 0.244
95 253525_at AT4G31330 unknown -0.172 -0.054
96 256621_at AT3G24450 [Heavy metal transport/detoxification superfamily protein ] -0.169 0.030
97 246495_at AT5G16200 [50S ribosomal protein-related] -0.166 0.290
98 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.162 -0.055
99 260556_at AT2G43620 [Chitinase family protein] -0.158 0.098
100 260943_at AT1G45145 ATH5, THIOREDOXIN H-TYPE 5, ATTRX5, thioredoxin H-type 5, LIV1, LOCUS OF INSENSITIVITY TO VICTORIN 1, TRX-h5, THIOREDOXIN H-TYPE 5, TRX5, thioredoxin H-type 5 -0.157 -0.045
101 264645_at AT1G08940 [Phosphoglycerate mutase family protein] -0.157 0.013
102 248230_at AT5G53830 [VQ motif-containing protein] -0.154 0.153
103 263124_at AT1G78480 [Prenyltransferase family protein] -0.151 0.280
104 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 -0.150 0.046
105 256942_at AT3G23290 LSH4, LIGHT SENSITIVE HYPOCOTYLS 4 -0.149 -0.080
106 261125_at AT1G04990 [Zinc finger C-x8-C-x5-C-x3-H type family protein] -0.148 -0.048
107 263913_at AT2G36570 PXC1, PXY/TDR-correlated 1 -0.142 0.021
108 248263_at AT5G53370 ATPMEPCRF, PECTIN METHYLESTERASE PCR FRAGMENT F, PMEPCRF, pectin methylesterase PCR fragment F -0.141 0.064
109 259839_at AT1G52190 AtNPF1.2, NPF1.2, NRT1/ PTR family 1.2, NRT1.11, nitrate transporter 1.11 -0.135 0.035
110 248796_at AT5G47180 [Plant VAMP (vesicle-associated membrane protein) family protein] -0.134 -0.259
111 250378_at AT5G11570 [Major facilitator superfamily protein] -0.134 -0.032
112 262811_at AT1G11700 unknown -0.131 -0.099
113 264708_at AT1G09740 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.129 0.037
114 256150_at AT1G55120 AtcwINV3, 6-fructan exohydrolase, ATFRUCT5, beta-fructofuranosidase 5, FRUCT5, beta-fructofuranosidase 5 -0.128 0.224
115 253405_at AT4G32800 [Integrase-type DNA-binding superfamily protein] -0.128 0.121
116 258018_at AT3G19500 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.124 -0.006
117 253172_at AT4G35060 HIPP25, heavy metal associated isoprenylated plant protein 25 -0.124 -0.004
118 252058_at AT3G52470 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.123 0.024
119 251037_at AT5G02100 ORP3A, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3A, UNE18, UNFERTILIZED EMBRYO SAC 18 -0.123 -0.154
120 260897_at AT1G29330 AERD2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ATERD2, ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ERD2, ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2 -0.122 0.126
121 251076_at AT5G01970 unknown -0.120 0.121
122 264205_at AT1G22790 unknown -0.119 -0.067
123 264044_at AT2G22480 PFK5, phosphofructokinase 5 -0.119 -0.087
124 251661_at AT3G56950 SIP2, SMALL AND BASIC INTRINSIC PROTEIN 2, SIP2;1, small and basic intrinsic protein 2;1 -0.116 0.011
125 260884_at AT1G29240 unknown -0.115 -0.216
126 258633_at AT3G07990 SCPL27, serine carboxypeptidase-like 27 -0.114 -0.026
127 266520_at AT2G23980 ATCNGC6, cyclic nucleotide-gated channel 6, CNGC6, cyclic nucleotide-gated channel 6 -0.114 -0.056
128 256927_at AT3G22550 unknown -0.114 -0.094
129 246550_at AT5G14920 GASA14, A-stimulated in Arabidopsis 14 -0.114 -0.040
130 250036_at AT5G18340 [ARM repeat superfamily protein] -0.112 0.088
131 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A -0.111 0.111
132 261285_at AT1G35720 ANN1, annexin 1, ANNAT1, annexin 1, AtANN1, ATOXY5, OXY5 -0.111 -0.121
133 250820_at AT5G05160 RUL1, REDUCED IN LATERAL GROWTH1 -0.110 0.110
134 262637_at AT1G06640 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.107 -0.163
135 246898_at AT5G25580 unknown -0.107 -0.023