4.0:Information of module
Anoxia
In comparison with root callus inducing medium 48 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009408 response to heat BP 5.396e-29
GO:0042542 response to hydrogen peroxide BP 1.456e-23
GO:0009642 response to light intensity BP 1.240e-22
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009725 response to hormone BP 2.059e-06
GO:0009733 response to auxin BP 2.429e-06
GO:0005975 carbohydrate metabolic process BP 3.071e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Anoxia		 Log2 signal ratio
root callus inducing medium 48 h
1 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 1.637 -0.450
2 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein 1.444 -0.610
3 262148_at AT1G52560 [HSP20-like chaperones superfamily protein] 1.434 -0.957
4 252515_at AT3G46230 ATHSP17.4, ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, HSP17.4, heat shock protein 17.4 1.400 -0.284
5 260978_at AT1G53540 [HSP20-like chaperones superfamily protein] 1.395 -0.432
6 253884_at AT4G27670 HSP21, heat shock protein 21 1.312 -0.836
7 254059_at AT4G25200 ATHSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6, HSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6 1.236 -0.889
8 262307_at AT1G71000 [Chaperone DnaJ-domain superfamily protein] 1.199 -0.700
9 266841_at AT2G26150 ATHSFA2, heat shock transcription factor A2, HSFA2, heat shock transcription factor A2 1.189 -0.863
10 247655_at AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 1.173 -0.728
11 261838_at AT1G16030 Hsp70b, heat shock protein 70B 1.164 -0.465
12 260522_x_at AT2G41730 unknown 1.134 -0.814
13 259866_at AT1G76640 CML39, CALMODULIN LIKE 39 1.102 -1.594
14 247324_at AT5G64190 unknown 1.072 -0.036
15 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 1.060 -0.657
16 266590_at AT2G46240 ATBAG6, ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BAG6, BCL-2-associated athanogene 6 1.059 -0.871
17 247208_at AT5G64870 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 1.056 -1.200
18 246584_at AT5G14730 unknown 1.046 -0.294
19 248215_at AT5G53680 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.987 -0.147
20 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.985 -0.830
21 245440_at AT4G16680 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.961 -1.042
22 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.953 -1.193
23 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.939 -0.609
24 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] 0.913 -0.663
25 265668_at AT2G32020 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.902 -0.660
26 247691_at AT5G59720 HSP18.2, heat shock protein 18.2 0.888 -0.216
27 249575_at AT5G37670 [HSP20-like chaperones superfamily protein] 0.886 -0.851
28 267263_at AT2G23110 [Late embryogenesis abundant protein, group 6] 0.863 -0.709
29 260248_at AT1G74310 ATHSP101, heat shock protein 101, HOT1, HSP101, heat shock protein 101 0.849 -0.579
30 259979_at AT1G76600 unknown 0.848 -0.584
31 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 0.821 -0.624
32 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 0.811 -0.422
33 256576_at AT3G28210 PMZ, SAP12, STRESS-ASSOCIATED PROTEIN 12 0.796 -0.563
34 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 0.779 -0.939
35 259913_at AT1G72660 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.760 -0.241
36 246018_at AT5G10695 unknown 0.749 -0.682
37 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 0.746 -0.712
38 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.744 -0.904
39 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.738 -0.141
40 255568_at AT4G01250 AtWRKY22, WRKY22 0.729 -0.808
41 251166_at AT3G63350 AT-HSFA7B, HSFA7B, HEAT SHOCK TRANSCRIPTION FACTOR A7B 0.728 -0.496
42 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 0.720 -0.402
43 258827_at AT3G07150 unknown 0.711 -0.396
44 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.710 -0.493
45 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.705 -0.622
46 266396_at AT2G38790 unknown 0.693 -0.712
47 257321_at ATMG01130 ORF106F 0.693 -0.288
48 257337_at ATMG00060 NAD5, NADH DEHYDROGENASE SUBUNIT 5, NAD5.3, NADH DEHYDROGENASE SUBUNIT 5.3, NAD5C, NADH dehydrogenase subunit 5C 0.669 -0.395
49 253859_at AT4G27657 unknown 0.669 -1.047
50 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.663 -0.413
51 255950_at AT1G22110 [structural constituent of ribosome] 0.655 -0.708
52 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 0.652 -0.301
53 263374_at AT2G20560 [DNAJ heat shock family protein] 0.650 -0.696
54 258695_at AT3G09640 APX1B, ASCORBATE PEROXIDASE 1B, APX2, ascorbate peroxidase 2 0.641 -0.275
55 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.633 -0.476
56 253322_at AT4G33980 unknown 0.621 -0.488
57 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.615 -0.651
58 252081_at AT3G51910 AT-HSFA7A, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, HSFA7A, heat shock transcription factor A7A 0.612 -0.771
59 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 0.608 -0.763
60 253305_at AT4G33666 unknown 0.605 -0.540
61 258939_at AT3G10020 unknown 0.605 -0.485
62 244950_at ATMG00160 COX2, cytochrome oxidase 2 0.600 -0.246
63 247543_at AT5G61600 ERF104, ethylene response factor 104 0.592 -0.263
64 245731_at AT1G73500 ATMKK9, MKK9, MAP kinase kinase 9 0.583 -0.025
65 254878_at AT4G11660 AT-HSFB2B, HSF7, HSFB2B, HEAT SHOCK TRANSCRIPTION FACTOR B2B 0.582 -0.338
66 262656_at AT1G14200 [RING/U-box superfamily protein] 0.578 -0.549
67 263515_at AT2G21640 unknown 0.573 -0.714
68 259947_at AT1G71530 [Protein kinase superfamily protein] 0.568 -0.802
69 263613_at AT2G25250 unknown -0.640 -0.172
70 261813_at AT1G08280 [Glycosyltransferase family 29 (sialyltransferase) family protein] -0.620 0.767
71 248213_at AT5G53660 AtGRF7, growth-regulating factor 7, GRF7, growth-regulating factor 7 -0.604 -0.032
72 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 -0.568 -0.663
73 261247_at AT1G20070 unknown -0.544 -0.149
74 260527_at AT2G47270 UPB1, UPBEAT1 -0.527 0.024
75 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 -0.502 -0.592
76 263318_at AT2G24762 AtGDU4, glutamine dumper 4, GDU4, glutamine dumper 4 -0.479 0.224
77 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.478 -0.154
78 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 -0.476 -0.033
79 260367_at AT1G69760 unknown -0.454 -0.258
80 258003_at AT3G29030 ATEXP5, ARABIDOPSIS THALIANA EXPANSIN 5, ATEXPA5, ARABIDOPSIS THALIANA EXPANSIN A5, ATHEXP ALPHA 1.4, EXP5, EXPANSIN 5, EXPA5, expansin A5 -0.447 -0.034
81 263923_at AT2G36485 [ENTH/VHS family protein] -0.413 0.320
82 265261_at AT2G42990 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.404 0.006
83 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -0.396 -0.010
84 251342_at AT3G60690 SAUR59, SMALL AUXIN UPREGULATED RNA 59 -0.390 -0.234
85 253243_at AT4G34560 unknown -0.388 0.225
86 257147_at AT3G27270 [TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein] -0.388 0.190
87 257105_at AT3G15300 [VQ motif-containing protein] -0.383 0.446
88 246395_at AT1G58170 [Disease resistance-responsive (dirigent-like protein) family protein] -0.368 0.500
89 260301_at AT1G80290 [Nucleotide-diphospho-sugar transferases superfamily protein] -0.365 0.167
90 252179_at AT3G50760 GATL2, galacturonosyltransferase-like 2 -0.356 0.090
91 258935_at AT3G10120 unknown -0.355 0.096
92 264319_at AT1G04110 AtSDD1, SDD1, STOMATAL DENSITY AND DISTRIBUTION 1 -0.350 -0.023
93 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.345 0.956
94 255571_at AT4G01220 MGP4, male gametophyte defective 4 -0.345 0.262
95 251287_at AT3G61820 [Eukaryotic aspartyl protease family protein] -0.339 0.525
96 250571_at AT5G08200 [peptidoglycan-binding LysM domain-containing protein] -0.338 -0.117
97 250287_at AT5G13330 Rap2.6L, related to AP2 6l -0.338 0.190
98 265250_at AT2G01950 BRL2, BRI1-like 2, VH1, VASCULAR HIGHWAY 1 -0.337 0.037
99 260024_at AT1G30080 [Glycosyl hydrolase superfamily protein] -0.336 0.603
100 265283_at AT2G20370 AtMUR3, KAM1, KATAMARI 1, MUR3, MURUS 3, RSA3, SHORT ROOT IN SALT MEDIUM 3 -0.328 -0.146
101 250820_at AT5G05160 RUL1, REDUCED IN LATERAL GROWTH1 -0.326 0.496
102 254914_at AT4G11290 [Peroxidase superfamily protein] -0.324 -0.914
103 264770_at AT1G23030 [ARM repeat superfamily protein] -0.319 0.115
104 264804_at AT1G08590 [Leucine-rich receptor-like protein kinase family protein] -0.316 -0.291
105 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.315 -0.149
106 259523_at AT1G12500 [Nucleotide-sugar transporter family protein] -0.309 0.042
107 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.305 0.011
108 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 -0.302 -0.321
109 263241_at AT2G16500 ADC1, arginine decarboxylase 1, ARGDC, ARGDC1, SPE1 -0.302 0.231
110 254515_at AT4G20270 BAM3, BARELY ANY MERISTEM 3 -0.298 0.425
111 254284_at AT4G22910 CCS52A1, cell cycle switch protein 52 A1, FZR2, FIZZY-related 2 -0.296 -0.134
112 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 -0.293 0.813
113 264527_at AT1G30760 [FAD-binding Berberine family protein] -0.293 0.530
114 259736_at AT1G64390 AtGH9C2, glycosyl hydrolase 9C2, GH9C2, glycosyl hydrolase 9C2 -0.290 0.546
115 259689_x_at AT1G63130 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.286 0.584
116 246983_at AT5G67200 [Leucine-rich repeat protein kinase family protein] -0.285 0.738
117 249113_at AT5G43790 [Pentatricopeptide repeat (PPR) superfamily protein] -0.285 0.314
118 262981_at AT1G75590 SAUR52, SMALL AUXIN UPREGULATED RNA 52 -0.284 -0.241
119 253455_at AT4G32020 unknown -0.283 -0.137
120 261825_at AT1G11545 XTH8, xyloglucan endotransglucosylase/hydrolase 8 -0.282 -0.387
121 251254_at AT3G62270 BOR2, REQUIRES HIGH BORON 2 -0.281 -0.108
122 257923_at AT3G23160 unknown -0.280 -0.064
123 246797_at AT5G26790 unknown -0.279 0.286
124 259328_at AT3G16440 ATMLP-300B, myrosinase-binding protein-like protein-300B, MEE36, maternal effect embryo arrest 36, MLP-300B, myrosinase-binding protein-like protein-300B -0.276 -0.211
125 248006_at AT5G56250 HAP8, HAPLESS 8 -0.274 0.094
126 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 -0.273 0.515
127 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] -0.272 -0.704
128 251048_at AT5G02410 ALG10, homolog of yeast ALG10 -0.268 0.263
129 263218_at AT1G30570 HERK2, hercules receptor kinase 2 -0.268 0.114
130 250015_at AT5G18070 DRT101, DNA-DAMAGE-REPAIR/TOLERATION 101 -0.266 0.158
131 250327_at AT5G12050 unknown -0.264 -0.314
132 249832_at AT5G23400 [Leucine-rich repeat (LRR) family protein] -0.263 0.510
133 252175_at AT3G50700 AtIDD2, indeterminate(ID)-domain 2, IDD2, indeterminate(ID)-domain 2 -0.258 0.538
134 248908_at AT5G45800 MEE62, maternal effect embryo arrest 62 -0.256 0.430
135 245412_at AT4G17280 [Auxin-responsive family protein] -0.254 -0.147