4.0:Information of module
pif4pif5 mut 24h FR
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0046777 protein autophosphorylation BP 1.930e-05
GO:0010016 shoot system morphogenesis BP 7.807e-04
GO:0022414 reproductive process BP 1.381e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048583 regulation of response to stimulus BP 7.249e-06
GO:0010017 red or far-red light signaling pathway BP 1.010e-04
GO:0071478 cellular response to radiation BP 1.355e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pif4pif5 mut 24h FR		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 252612_at AT3G45160 [Putative membrane lipoprotein] 0.339 -1.005
2 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 0.327 0.626
3 266465_at AT2G47750 GH3.9, putative indole-3-acetic acid-amido synthetase GH3.9 0.299 -0.704
4 263492_at AT2G42560 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] 0.248 -0.271
5 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 0.233 0.693
6 259172_at AT3G03630 CS26, cysteine synthase 26 0.206 1.609
7 251577_at AT3G58350 RTM3, RESTRICTED TEV MOVEMENT 3 0.192 -0.823
8 256024_at AT1G58340 BCD1, BUSH-AND-CHLOROTIC-DWARF 1, ZF14, ZRZ, ZRIZI 0.190 -0.698
9 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.186 -0.549
10 260388_at AT1G74070 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] 0.180 -0.106
11 260380_at AT1G73870 BBX16, B-box domain protein 16, COL7, CONSTANS-LIKE 7 0.178 0.058
12 250187_at AT5G14370 [CCT motif family protein] 0.170 -0.932
13 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] 0.169 -0.148
14 264037_at AT2G03750 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.168 0.741
15 262517_at AT1G17180 ATGSTU25, glutathione S-transferase TAU 25, GSTU25, glutathione S-transferase TAU 25 0.167 0.292
16 261596_at AT1G33080 [MATE efflux family protein] 0.166 -0.243
17 245616_at AT4G14480 [Protein kinase superfamily protein] 0.165 -0.528
18 245565_at AT4G14605 MDA1, MTERF DEFECTIVE IN Arabidopsis1 0.165 0.331
19 259082_at AT3G04820 [Pseudouridine synthase family protein] 0.164 -0.903
20 249814_at AT5G23840 [MD-2-related lipid recognition domain-containing protein] 0.164 -0.604
21 250915_at AT5G03790 ATHB51, HB51, homeobox 51, LMI1, LATE MERISTEM IDENTITY1 0.162 -0.440
22 259572_at AT1G20400 unknown 0.162 -0.930
23 247577_at AT5G61290 [Flavin-binding monooxygenase family protein] 0.158 0.402
24 260877_at AT1G21500 unknown 0.153 0.012
25 254138_at AT4G24950 unknown 0.153 -0.877
26 256020_at AT1G58290 AtHEMA1, Arabidopsis thaliana hemA 1, HEMA1 0.152 0.217
27 253815_at AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 0.147 -0.294
28 251549_at AT3G58890 [RNI-like superfamily protein] 0.146 -0.908
29 265429_at AT2G20710 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.143 -0.396
30 258911_at AT3G06470 [GNS1/SUR4 membrane protein family] 0.142 1.058
31 255934_at AT1G12740 CYP87A2, cytochrome P450, family 87, subfamily A, polypeptide 2 0.141 -0.073
32 249439_at AT5G40020 [Pathogenesis-related thaumatin superfamily protein] 0.141 -0.141
33 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -1.099 0.317
34 254685_at AT4G13790 SAUR25, SMALL AUXIN UPREGULATED RNA 25 -0.639 -0.199
35 251768_at AT3G55940 [Phosphoinositide-specific phospholipase C family protein] -0.425 -0.019
36 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.373 0.440
37 262198_at AT1G53830 ATPME2, pectin methylesterase 2, PME2, pectin methylesterase 2 -0.345 -0.355
38 261109_at AT1G75450 ATCKX5, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX6, CYTOKININ OXIDASE 6, CKX5, cytokinin oxidase 5 -0.340 -0.212
39 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.324 0.207
40 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A -0.323 -0.346
41 253155_at AT4G35720 unknown -0.312 -1.104
42 260841_at AT1G29195 unknown -0.293 0.405
43 251870_at AT3G54510 [Early-responsive to dehydration stress protein (ERD4)] -0.259 0.742
44 255007_at AT4G10020 AtHSD5, hydroxysteroid dehydrogenase 5, HSD5, hydroxysteroid dehydrogenase 5 -0.255 -0.129
45 251771_at AT3G56000 ATCSLA14, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A14, CSLA14, cellulose synthase like A14 -0.249 -0.205
46 247074_at AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.246 0.753
47 261261_at AT1G26730 [EXS (ERD1/XPR1/SYG1) family protein] -0.241 0.328
48 264395_at AT1G12070 [Immunoglobulin E-set superfamily protein] -0.233 -0.125
49 249626_at AT5G37540 [Eukaryotic aspartyl protease family protein] -0.219 -0.327
50 260527_at AT2G47270 UPB1, UPBEAT1 -0.208 0.165
51 261046_at AT1G01390 [UDP-Glycosyltransferase superfamily protein] -0.203 -0.982
52 264822_at AT1G03457 AtBRN2, BRN2, Bruno-like 2 -0.203 0.537
53 245314_at AT4G16745 [Exostosin family protein] -0.201 -0.778
54 249807_at AT5G23870 [Pectinacetylesterase family protein] -0.198 -0.789
55 264296_at AT1G78720 [SecY protein transport family protein] -0.191 -1.335
56 264059_at AT2G31305 INH3, INHIBITOR-3 -0.187 -0.429
57 257799_at AT3G15890 [Protein kinase superfamily protein] -0.186 -0.354
58 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.179 -0.464
59 247135_at AT5G66260 SAUR11, SMALL AUXIN UPREGULATED RNA 11 -0.179 0.181
60 267048_at AT2G34200 [RING/FYVE/PHD zinc finger superfamily protein] -0.177 0.358
61 260989_at AT1G53450 unknown -0.168 0.785
62 250657_at AT5G07000 ATST2B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, ST2B, sulfotransferase 2B -0.166 0.216
63 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 -0.161 1.062